Wall clock time and date at job start Mon Mar 30 2020 01:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38094 * 119.92568 * 2 1 4 4 C 1.38041 * 120.30989 * 180.26378 * 3 2 1 5 5 C 1.39754 * 120.15007 * 359.48403 * 4 3 2 6 6 C 1.47752 * 120.07351 * 180.23529 * 5 4 3 7 7 O 1.21471 * 119.99917 * 180.02562 * 6 5 4 8 8 O 1.34704 * 119.99829 * 0.02562 * 6 5 4 9 9 C 1.45203 * 116.99992 * 179.97438 * 8 6 5 10 10 C 1.52991 * 109.47628 * 180.02562 * 9 8 6 11 11 C 1.52994 * 109.47520 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.47570 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99501 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00365 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00121 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00098 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47399 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47622 * 120.00231 * 16 14 12 19 19 H 1.48504 * 109.47080 * 239.99756 * 16 14 12 20 20 C 1.39337 * 119.85096 * 0.25949 * 5 4 3 21 21 C 1.39389 * 119.69596 * 359.97438 * 20 5 4 22 22 C 1.43195 * 120.08109 * 180.02562 * 21 20 5 23 23 N 3.48473 * 80.30309 * 179.73437 * 2 1 3 24 24 H 1.09005 * 109.46690 * 270.25007 * 1 2 3 25 25 H 1.09000 * 109.47204 * 30.24745 * 1 2 3 26 26 H 1.08996 * 109.46985 * 150.25682 * 1 2 3 27 27 H 1.07996 * 119.84688 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.92722 * 179.76997 * 4 3 2 29 29 H 1.09000 * 109.47389 * 300.01059 * 9 8 6 30 30 H 1.09008 * 109.46952 * 59.99661 * 9 8 6 31 31 H 1.09005 * 109.46908 * 300.00691 * 10 9 8 32 32 H 1.08994 * 109.47447 * 60.00003 * 10 9 8 33 33 H 1.09000 * 109.46847 * 299.99847 * 11 10 9 34 34 H 1.09000 * 109.47238 * 60.00086 * 11 10 9 35 35 H 0.96999 * 120.00605 * 179.97438 * 15 14 12 36 36 H 1.08006 * 120.15448 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1968 0.0000 4 6 3.5764 1.2061 -0.0055 5 6 4.2864 0.0024 -0.0002 6 6 5.7639 0.0143 -0.0008 7 8 6.3797 -1.0327 0.0033 8 8 6.4280 1.1863 -0.0060 9 6 7.8786 1.1220 -0.0057 10 6 8.4520 2.5404 -0.0113 11 6 9.9804 2.4727 -0.0117 12 6 10.5453 3.8698 -0.0178 13 1 9.8805 4.7210 -0.0207 14 6 11.9106 4.0615 -0.0187 15 7 12.7201 3.0251 -0.0136 16 14 12.6107 5.7933 -0.0256 17 1 11.4982 6.7770 -0.0300 18 1 13.4453 5.9948 1.1860 19 1 13.4452 5.9851 -1.2389 20 6 3.5979 -1.2090 0.0052 21 6 2.2040 -1.2110 0.0057 22 6 1.4881 -2.4511 0.0118 23 7 0.9201 -3.4349 0.0159 24 1 -0.3633 0.0045 1.0277 25 1 -0.3633 0.8877 -0.5177 26 1 -0.3633 -0.8922 -0.5098 27 1 1.6523 2.1299 0.0004 28 1 4.1089 2.1457 -0.0092 29 1 8.2189 0.5964 0.8865 30 1 8.2188 0.5886 -0.8934 31 1 8.1117 3.0663 -0.9034 32 1 8.1118 3.0734 0.8765 33 1 10.3210 1.9466 0.8802 34 1 10.3203 1.9399 -0.8998 35 1 13.6807 3.1598 -0.0146 36 1 4.1417 -2.1421 0.0088 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799550892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:57 Heat of formation + Delta-G solvation = -70.416984 kcal Electronic energy + Delta-G solvation = -18919.148500 eV Core-core repulsion = 15753.099606 eV Total energy + Delta-G solvation = -3166.048894 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.72326 -40.37979 -37.86550 -37.53842 -35.91512 -34.21127 -33.57044 -32.50769 -29.43545 -28.45766 -25.62134 -24.74574 -23.83430 -22.15996 -22.09575 -20.11568 -18.67008 -18.10136 -17.66386 -17.45063 -16.66370 -16.44333 -16.34147 -15.75242 -15.36975 -15.12696 -14.66510 -14.30473 -14.14304 -14.04351 -13.99817 -13.87800 -13.74007 -13.23657 -12.93903 -12.81618 -12.74325 -12.48709 -12.40013 -12.24789 -12.06848 -11.82871 -11.43223 -11.38655 -11.19607 -10.55928 -10.13223 -9.96018 -8.19777 -6.30975 -0.55809 -0.18673 1.28733 1.38130 1.43740 1.44253 1.57300 1.64741 1.93933 2.43302 2.72231 2.72985 3.14611 3.44424 3.67541 3.76832 3.98848 4.04004 4.09420 4.16670 4.40434 4.46416 4.60609 4.76340 4.80534 4.83539 4.84074 5.06166 5.11324 5.15578 5.19919 5.31149 5.39611 5.53642 5.64141 5.67404 5.83223 6.21367 6.32617 6.61885 6.85899 7.38763 8.92683 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.043464 B = 0.002647 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.058303 B =10576.918984 C =11189.927110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.011 3.989 3 C -0.118 4.118 4 C -0.018 4.018 5 C -0.145 4.145 6 C 0.504 3.496 7 O -0.542 6.542 8 O -0.345 6.345 9 C 0.078 3.922 10 C -0.092 4.092 11 C 0.024 3.976 12 C -0.539 4.539 13 H 0.068 0.932 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.257 1.257 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.006 4.006 21 C -0.055 4.055 22 C 0.280 3.720 23 N -0.454 5.454 24 H 0.097 0.903 25 H 0.109 0.891 26 H 0.059 0.941 27 H 0.184 0.816 28 H 0.162 0.838 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.070 0.930 33 H -0.004 1.004 34 H -0.004 1.004 35 H 0.264 0.736 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.194 -0.936 0.080 26.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.008 3.992 3 C -0.135 4.135 4 C -0.037 4.037 5 C -0.146 4.146 6 C 0.350 3.650 7 O -0.434 6.434 8 O -0.261 6.261 9 C 0.005 3.995 10 C -0.130 4.130 11 C -0.014 4.014 12 C -0.577 4.577 13 H 0.086 0.914 14 C -0.201 4.201 15 N -0.576 5.576 16 Si 0.793 3.207 17 H -0.181 1.181 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.027 4.027 21 C -0.058 4.058 22 C -0.035 4.035 23 N -0.130 5.130 24 H 0.115 0.885 25 H 0.127 0.873 26 H 0.078 0.922 27 H 0.201 0.799 28 H 0.179 0.821 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.014 0.986 34 H 0.014 0.986 35 H 0.072 0.928 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -26.691 -2.797 0.087 26.838 hybrid contribution 1.638 0.301 -0.008 1.666 sum -25.053 -2.496 0.079 25.177 Atomic orbital electron populations 1.21126 0.88178 1.04725 1.04602 1.20541 0.97822 0.90751 0.90055 1.21387 0.92793 0.98870 1.00486 1.22017 0.95168 0.97502 0.88985 1.18856 0.87765 0.95692 1.12330 1.21632 0.89779 0.81549 0.72004 1.90835 1.70667 1.34343 1.47534 1.86488 1.23011 1.33206 1.83429 1.23185 0.74513 0.99887 1.01931 1.21447 0.95631 0.92997 1.02898 1.18955 0.90610 0.96387 0.95415 1.21664 0.92154 0.93439 1.50426 0.91415 1.26019 0.97815 1.01532 0.94740 1.70108 1.03667 1.32079 1.51718 0.85343 0.78486 0.79268 0.77613 1.18116 1.20582 1.20588 1.21161 0.92278 0.98001 0.91286 1.15678 0.90868 0.87187 1.12076 1.25598 0.92681 0.92523 0.92671 1.81294 1.09877 1.11456 1.10324 0.88451 0.87259 0.92199 0.79901 0.82063 0.91888 0.91886 0.91096 0.91088 0.98582 0.98585 0.92765 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.64 9.60 71.24 0.68 0.05 16 2 C 0.01 0.10 5.92 -19.54 -0.12 -0.01 16 3 C -0.12 -0.83 9.67 22.19 0.21 -0.62 16 4 C -0.02 -0.23 9.61 22.59 0.22 -0.01 16 5 C -0.15 -2.88 5.87 -20.13 -0.12 -2.99 16 6 C 0.50 14.34 7.90 70.34 0.56 14.90 16 7 O -0.54 -19.05 16.13 19.93 0.32 -18.73 16 8 O -0.35 -10.25 9.46 -56.14 -0.53 -10.79 16 9 C 0.08 2.75 5.47 71.98 0.39 3.14 16 10 C -0.09 -3.59 5.53 30.59 0.17 -3.42 16 11 C 0.02 1.20 4.97 29.85 0.15 1.35 16 12 C -0.54 -29.69 9.11 25.60 0.23 -29.46 16 13 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 14 C 0.00 -0.20 5.46 84.65 0.46 0.27 16 15 N -0.94 -56.40 13.29 21.44 0.28 -56.11 16 16 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 17 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 C -0.01 -0.12 9.30 22.81 0.21 0.09 16 21 C -0.05 -0.81 5.73 -21.40 -0.12 -0.93 16 22 C 0.28 5.21 13.77 88.33 1.22 6.43 16 23 N -0.45 -10.59 18.54 19.00 0.35 -10.24 16 24 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 25 H 0.11 0.02 8.09 -2.39 -0.02 0.00 16 26 H 0.06 0.47 7.07 -2.39 -0.02 0.45 16 27 H 0.18 -0.03 8.06 -2.91 -0.02 -0.06 16 28 H 0.16 1.76 7.60 -2.91 -0.02 1.74 16 29 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 31 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 32 H 0.07 2.62 8.14 -2.39 -0.02 2.61 16 33 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 34 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 35 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 36 H 0.14 2.77 7.64 -2.91 -0.02 2.75 16 Total: -1.00 -70.67 327.67 7.69 -62.98 By element: Atomic # 1 Polarization: -2.20 SS G_CDS: 1.09 Total: -1.11 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 4.15 Total: -11.22 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: 0.64 Total: -66.35 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.21 Total: -29.51 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -70.67 7.69 -62.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799550892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.441 kcal (2) G-P(sol) polarization free energy of solvation -70.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds