Wall clock time and date at job start Mon Mar 30 2020 01:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39744 * 120.09307 * 212.73479 * 3 2 1 5 5 C 1.37745 * 119.90724 * 180.02562 * 4 3 2 6 6 C 1.38953 * 120.09470 * 0.02562 * 5 4 3 7 7 O 1.35800 * 119.90495 * 179.97438 * 6 5 4 8 8 C 1.34287 * 116.99807 * 77.10479 * 7 6 5 9 9 O 1.20823 * 120.00235 * 355.09025 * 8 7 6 10 10 C 1.50709 * 119.99778 * 175.08767 * 8 7 6 11 11 C 1.53004 * 109.46727 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.46772 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.47137 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47289 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99981 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00131 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99883 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00105 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46957 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47135 * 119.99814 * 18 16 14 21 21 H 1.48502 * 109.47171 * 240.00216 * 18 16 14 22 22 C 1.38942 * 120.18641 * 0.23388 * 6 5 4 23 23 C 1.37751 * 120.09722 * 359.48525 * 22 6 5 24 24 H 1.08004 * 120.04740 * 0.02562 * 4 3 2 25 25 H 1.08000 * 119.95686 * 180.02562 * 5 4 3 26 26 H 1.09000 * 109.47029 * 300.00018 * 10 8 7 27 27 H 1.08993 * 109.47052 * 60.00138 * 10 8 7 28 28 H 1.09000 * 109.47230 * 299.99710 * 11 10 8 29 29 H 1.09001 * 109.47255 * 60.00480 * 11 10 8 30 30 H 1.09004 * 109.47431 * 300.00140 * 12 11 10 31 31 H 1.09005 * 109.47495 * 60.00441 * 12 11 10 32 32 H 1.09000 * 109.47073 * 299.99881 * 13 12 11 33 33 H 1.09001 * 109.47047 * 60.00427 * 13 12 11 34 34 H 0.96996 * 120.00265 * 180.02562 * 17 16 14 35 35 H 1.08003 * 119.94916 * 179.71993 * 22 6 5 36 36 H 1.08003 * 120.04853 * 180.23085 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 1.0180 0.6538 5 6 4.6457 1.0152 0.6509 6 6 5.3390 0.0029 -0.0013 7 8 6.6969 0.0041 -0.0021 8 6 7.3076 -0.4019 1.1228 9 8 6.6538 -0.6620 2.1051 10 6 8.8085 -0.5332 1.1602 11 6 9.2444 -1.0093 2.5474 12 6 10.7680 -1.1432 2.5851 13 6 11.2040 -1.6187 3.9724 14 6 12.7049 -1.7500 4.0098 15 1 13.2893 -1.5171 3.1320 16 6 13.3319 -2.1663 5.1650 17 7 12.6203 -2.4494 6.2341 18 14 15.1923 -2.3284 5.2115 19 1 15.7551 -1.9526 3.8896 20 1 15.7416 -1.4280 6.2568 21 1 15.5592 -3.7328 5.5251 22 6 4.6467 -1.0076 -0.6571 23 6 3.2692 -1.0156 -0.6543 24 1 2.7301 1.8055 1.1607 25 1 5.1876 1.8008 1.1563 26 1 9.1287 -1.2570 0.4107 27 1 9.2632 0.4344 0.9483 28 1 8.9242 -0.2858 3.2971 29 1 8.7897 -1.9771 2.7588 30 1 11.0879 -1.8669 1.8354 31 1 11.2232 -0.1756 2.3735 32 1 10.8843 -0.8946 4.7218 33 1 10.7490 -2.5862 4.1845 34 1 13.0614 -2.7420 7.0469 35 1 5.1895 -1.7901 -1.1667 36 1 2.7319 -1.8035 -1.1613 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805846795.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:40 Heat of formation + Delta-G solvation = -61.164404 kcal Electronic energy + Delta-G solvation = -18790.435015 eV Core-core repulsion = 15624.787343 eV Total energy + Delta-G solvation = -3165.647672 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.42911 -40.13487 -38.35559 -37.26005 -36.62463 -34.64514 -32.29232 -32.15275 -31.31328 -27.87360 -25.66239 -24.03948 -24.01208 -22.15083 -21.50968 -20.08225 -19.28208 -18.37901 -17.98895 -17.91431 -16.57604 -16.48501 -15.74347 -15.61355 -15.51832 -15.16410 -14.63773 -14.55486 -14.51975 -14.21662 -13.82660 -13.61461 -13.55516 -13.27519 -13.09699 -12.91975 -12.82083 -12.31511 -12.17202 -12.16486 -11.81601 -11.72325 -11.34712 -11.27644 -11.04462 -10.53044 -10.17659 -9.88212 -8.16902 -6.28074 -0.55714 0.22289 1.06350 1.42222 1.42920 1.43558 1.52303 1.56440 1.99824 2.43781 2.73554 2.76404 3.16482 3.57585 3.77431 3.80117 3.96072 4.13243 4.14480 4.32732 4.44333 4.66296 4.68167 4.82861 4.86292 4.87860 4.91550 5.12412 5.18307 5.19553 5.27525 5.35915 5.41077 5.59975 5.68466 5.81931 5.91929 6.28287 6.34507 6.75154 6.91311 7.41581 8.95291 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.053623 B = 0.002356 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.039804 B =11880.626832 C =12093.881475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.281 3.719 3 C -0.038 4.038 4 C -0.049 4.049 5 C -0.133 4.133 6 C 0.092 3.908 7 O -0.293 6.293 8 C 0.467 3.533 9 O -0.521 6.521 10 C -0.099 4.099 11 C -0.102 4.102 12 C -0.097 4.097 13 C 0.017 3.983 14 C -0.539 4.539 15 H 0.067 0.933 16 C -0.007 4.007 17 N -0.937 5.937 18 Si 0.967 3.033 19 H -0.257 1.257 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.123 4.123 23 C -0.046 4.046 24 H 0.159 0.841 25 H 0.144 0.856 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.064 0.936 32 H -0.013 1.013 33 H -0.013 1.013 34 H 0.262 0.738 35 H 0.162 0.838 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.066 6.260 -17.918 24.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.033 4.033 3 C -0.041 4.041 4 C -0.069 4.069 5 C -0.151 4.151 6 C 0.050 3.950 7 O -0.208 6.208 8 C 0.312 3.688 9 O -0.408 6.408 10 C -0.136 4.136 11 C -0.139 4.139 12 C -0.134 4.134 13 C -0.020 4.020 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.791 3.209 19 H -0.181 1.181 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.141 4.141 23 C -0.066 4.066 24 H 0.177 0.823 25 H 0.162 0.838 26 H 0.154 0.846 27 H 0.153 0.847 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.005 0.995 33 H 0.005 0.995 34 H 0.071 0.929 35 H 0.180 0.820 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -17.033 6.142 -17.446 25.144 hybrid contribution 1.081 -0.171 0.838 1.379 sum -15.952 5.971 -16.608 23.789 Atomic orbital electron populations 1.81309 1.13241 1.09032 1.09845 1.25709 0.92516 0.92593 0.92501 1.16152 0.83657 0.99464 1.04832 1.21225 0.92949 0.97139 0.95616 1.21423 0.94744 0.99326 0.99616 1.19221 0.81252 0.95838 0.98719 1.84638 1.18508 1.77730 1.39957 1.24818 0.92781 0.71597 0.79579 1.90724 1.67795 1.46146 1.36087 1.21556 0.84347 1.07432 1.00264 1.21378 0.96184 1.01110 0.95274 1.21441 0.93304 1.01203 0.97469 1.19073 0.94995 0.94390 0.93558 1.21803 0.93712 1.44235 0.97919 0.91513 1.26062 1.03773 0.95191 0.95426 1.70125 1.37543 1.47179 1.02962 0.85374 0.79221 0.77650 0.78638 1.18066 1.20673 1.20654 1.21356 0.94264 0.97748 1.00711 1.21306 0.92964 0.96770 0.95558 0.82298 0.83816 0.84607 0.84739 0.92988 0.92996 0.91696 0.91739 0.99497 0.99485 0.92934 0.82035 0.81521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.11 18.54 19.00 0.35 -9.75 16 2 C 0.28 4.71 15.33 88.33 1.35 6.06 16 3 C -0.04 -0.49 5.74 -21.31 -0.12 -0.62 16 4 C -0.05 -0.62 9.75 22.52 0.22 -0.40 16 5 C -0.13 -2.08 9.55 22.32 0.21 -1.87 16 6 C 0.09 1.61 5.14 22.61 0.12 1.72 16 7 O -0.29 -5.59 10.02 5.71 0.06 -5.53 16 8 C 0.47 10.71 7.83 71.24 0.56 11.26 16 9 O -0.52 -15.88 15.47 21.97 0.34 -15.54 16 10 C -0.10 -1.99 5.81 29.85 0.17 -1.82 16 11 C -0.10 -3.13 4.50 30.59 0.14 -2.99 16 12 C -0.10 -3.56 5.15 30.59 0.16 -3.40 16 13 C 0.02 0.88 4.97 29.85 0.15 1.03 16 14 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 15 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 16 C -0.01 -0.43 5.46 84.66 0.46 0.04 16 17 N -0.94 -57.55 13.29 21.45 0.28 -57.26 16 18 Si 0.97 43.75 29.54 68.60 2.03 45.77 16 19 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 C -0.12 -1.59 9.97 22.32 0.22 -1.37 16 23 C -0.05 -0.49 9.75 22.52 0.22 -0.27 16 24 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 25 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 26 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 29 H 0.05 1.74 8.10 -2.39 -0.02 1.73 16 30 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 32 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 33 H -0.01 -0.76 8.14 -2.39 -0.02 -0.77 16 34 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -72.87 329.56 8.23 -64.64 By element: Atomic # 1 Polarization: -0.94 SS G_CDS: 1.08 Total: 0.14 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 4.09 Total: -22.47 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: 0.64 Total: -67.02 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: 0.40 Total: -21.07 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -72.87 8.23 -64.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805846795.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.475 kcal (2) G-P(sol) polarization free energy of solvation -72.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds