Wall clock time and date at job start Mon Mar 30 2020 01:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99858 * 2 1 4 4 H 1.48499 * 109.46789 * 269.99499 * 3 2 1 5 5 H 1.48499 * 109.47094 * 29.99742 * 3 2 1 6 6 H 1.48501 * 109.47033 * 150.00192 * 3 2 1 7 7 C 1.37878 * 120.00504 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00621 * 183.92540 * 7 2 1 9 9 C 1.50711 * 119.99723 * 3.93019 * 7 2 1 10 10 O 1.42896 * 112.84485 * 307.12686 * 9 7 2 11 11 C 1.34912 * 117.00301 * 299.58126 * 10 9 7 12 12 O 1.21623 * 119.99514 * 353.14047 * 11 10 9 13 13 C 1.46231 * 119.99924 * 173.13684 * 11 10 9 14 14 C 1.34912 * 119.99458 * 160.25455 * 13 11 10 15 15 C 1.47171 * 120.00613 * 344.79019 * 14 13 11 16 16 C 1.40287 * 120.58638 * 140.11018 * 15 14 13 17 17 C 1.38290 * 118.25983 * 180.02562 * 16 15 14 18 18 C 1.38399 * 119.33640 * 359.97438 * 17 16 15 19 19 N 1.31940 * 121.14425 * 0.02562 * 18 17 16 20 20 C 1.31655 * 121.90730 * 359.97438 * 19 18 17 21 21 C 1.53783 * 113.61289 * 78.31919 * 9 7 2 22 22 C 1.53959 * 87.01649 * 89.22846 * 21 9 7 23 23 C 1.53776 * 113.61516 * 175.92774 * 9 7 2 24 24 H 0.96993 * 120.00074 * 5.01330 * 1 2 3 25 25 H 1.07996 * 120.00242 * 340.25710 * 13 11 10 26 26 H 1.08006 * 119.99623 * 164.79133 * 14 13 11 27 27 H 1.07990 * 120.87211 * 359.74742 * 16 15 14 28 28 H 1.08003 * 120.32640 * 179.97438 * 17 16 15 29 29 H 1.07996 * 119.42378 * 180.02562 * 18 17 16 30 30 H 1.08001 * 119.74140 * 180.02562 * 20 19 18 31 31 H 1.08997 * 113.61284 * 203.74871 * 21 9 7 32 32 H 1.09004 * 113.61270 * 334.65568 * 21 9 7 33 33 H 1.08990 * 113.53886 * 270.80755 * 22 21 9 34 34 H 1.09005 * 113.73897 * 139.93918 * 22 21 9 35 35 H 1.09007 * 113.61394 * 25.34901 * 23 9 7 36 36 H 1.08995 * 113.61375 * 156.16785 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0827 -1.1951 0.0646 9 6 1.2538 -2.4977 -0.0883 10 8 0.2275 -2.6153 0.8990 11 6 0.6123 -2.5678 2.1912 12 8 1.7954 -2.5560 2.4732 13 6 -0.3929 -2.5304 3.2526 14 6 -0.0573 -2.8792 4.5119 15 6 1.1968 -3.6067 4.7647 16 6 1.9881 -3.2984 5.8813 17 6 3.1574 -4.0118 6.0722 18 6 3.5060 -4.9975 5.1654 19 7 2.7428 -5.2669 4.1234 20 6 1.6205 -4.6172 3.8963 21 6 0.7820 -2.8411 -1.5112 22 6 2.1359 -3.5487 -1.7027 23 6 2.1685 -3.7307 -0.1760 24 1 -0.4850 0.8368 -0.0734 25 1 -1.4038 -2.2237 3.0283 26 1 -0.7091 -2.6245 5.3346 27 1 1.6943 -2.5213 6.5712 28 1 3.7920 -3.8018 6.9205 29 1 4.4186 -5.5557 5.3133 30 1 1.0223 -4.8668 3.0324 31 1 -0.0719 -3.5180 -1.5366 32 1 0.6505 -1.9679 -2.1502 33 1 2.9200 -2.8932 -2.0812 34 1 2.0665 -4.4872 -2.2528 35 1 3.1548 -3.5747 0.2613 36 1 1.6948 -4.6510 0.1656 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810859218.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:00 Heat of formation + Delta-G solvation = -19.946978 kcal Electronic energy + Delta-G solvation = -21267.051443 eV Core-core repulsion = 18103.191093 eV Total energy + Delta-G solvation = -3163.860350 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.43036 -40.68768 -38.88205 -36.14168 -35.13247 -34.36996 -33.06895 -30.93217 -28.23753 -26.43817 -26.16759 -24.67307 -24.31007 -22.99762 -20.49885 -20.32438 -18.98542 -18.10459 -17.48143 -17.23878 -16.99069 -16.81354 -16.04088 -15.77091 -15.44459 -14.95094 -14.82245 -14.40006 -14.19865 -13.95636 -13.67551 -13.48556 -13.03982 -12.92738 -12.82378 -12.61616 -12.22017 -12.17098 -11.81228 -11.65507 -11.33584 -11.10956 -10.81396 -10.55610 -10.54522 -10.34817 -10.25105 -9.34951 -8.17903 -6.34887 -0.35411 0.41766 0.83019 1.32482 1.34061 1.43813 2.26612 2.34525 2.66126 2.95163 3.11424 3.52990 3.76582 3.95644 3.99912 4.01805 4.03611 4.15613 4.22393 4.39403 4.57907 4.60771 4.70238 4.83290 4.85598 4.90433 5.00510 5.13417 5.15499 5.29756 5.33968 5.38383 5.43620 5.63521 5.76318 5.83406 6.02515 6.49809 6.67217 7.07193 7.31394 7.54397 8.85826 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018565 B = 0.006804 C = 0.006101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.836090 B = 4114.072317 C = 4588.019850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.035 3.965 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.042 0.958 9 C 0.220 3.780 10 O -0.345 6.345 11 C 0.482 3.518 12 O -0.531 6.531 13 C -0.189 4.189 14 C -0.017 4.017 15 C -0.127 4.127 16 C -0.063 4.063 17 C -0.172 4.172 18 C 0.082 3.918 19 N -0.520 5.520 20 C 0.128 3.872 21 C -0.111 4.111 22 C -0.113 4.113 23 C -0.151 4.151 24 H 0.264 0.736 25 H 0.158 0.842 26 H 0.191 0.809 27 H 0.167 0.833 28 H 0.172 0.828 29 H 0.177 0.823 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.038 0.962 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.316 -6.327 10.972 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.168 4.168 3 Si 0.769 3.231 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.567 4.567 8 H 0.060 0.940 9 C 0.185 3.815 10 O -0.261 6.261 11 C 0.328 3.672 12 O -0.423 6.423 13 C -0.208 4.208 14 C -0.035 4.035 15 C -0.129 4.129 16 C -0.088 4.088 17 C -0.192 4.192 18 C -0.074 4.074 19 N -0.229 5.229 20 C -0.029 4.029 21 C -0.148 4.148 22 C -0.150 4.150 23 C -0.189 4.189 24 H 0.073 0.927 25 H 0.176 0.824 26 H 0.208 0.792 27 H 0.185 0.815 28 H 0.190 0.810 29 H 0.195 0.805 30 H 0.140 0.860 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.057 0.943 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.143 -6.892 10.469 12.535 hybrid contribution 0.300 1.740 0.061 1.767 sum 0.443 -5.152 10.530 11.731 Atomic orbital electron populations 1.70145 1.06435 1.27585 1.47839 1.25614 0.95698 1.01662 0.93832 0.85791 0.78579 0.80065 0.78713 1.19041 1.20312 1.20736 1.21080 0.92335 0.90752 1.52504 0.93989 1.20809 0.84224 0.92275 0.84232 1.86100 1.43423 1.80941 1.15663 1.21598 0.88673 0.72888 0.84006 1.90780 1.20366 1.46667 1.84479 1.22780 0.99615 1.06944 0.91479 1.22670 0.93696 0.90977 0.96153 1.20199 0.97701 0.98003 0.96962 1.22087 0.93510 0.97906 0.95341 1.22401 0.97986 0.96819 1.01959 1.23327 0.98585 0.95938 0.89505 1.67487 1.05444 1.29070 1.20903 1.22649 0.92402 0.92354 0.95511 1.22988 0.96856 0.98914 0.96085 1.22486 0.97241 1.00372 0.94883 1.23427 0.99615 0.98348 0.97515 0.92691 0.82443 0.79172 0.81529 0.81041 0.80549 0.86040 0.90867 0.92997 0.90708 0.89223 0.94293 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.20 12.58 21.45 0.27 -49.93 16 2 C 0.04 1.96 5.43 84.66 0.46 2.42 16 3 Si 0.94 44.76 29.54 68.60 2.03 46.79 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.53 -30.38 6.93 25.60 0.18 -30.20 16 8 H 0.04 2.53 7.81 -2.91 -0.02 2.51 16 9 C 0.22 11.46 0.55 -11.01 -0.01 11.46 16 10 O -0.35 -18.02 9.15 -58.27 -0.53 -18.55 16 11 C 0.48 22.97 5.81 69.90 0.41 23.38 16 12 O -0.53 -27.67 11.97 19.43 0.23 -27.44 16 13 C -0.19 -6.76 9.98 23.58 0.24 -6.52 16 14 C -0.02 -0.46 9.82 23.85 0.23 -0.22 16 15 C -0.13 -3.95 4.53 -20.05 -0.09 -4.04 16 16 C -0.06 -1.56 9.95 22.78 0.23 -1.34 16 17 C -0.17 -3.93 10.09 22.32 0.23 -3.71 16 18 C 0.08 2.27 11.17 84.71 0.95 3.22 16 19 N -0.52 -18.72 10.34 -194.50 -2.01 -20.73 16 20 C 0.13 4.73 8.32 85.10 0.71 5.44 16 21 C -0.11 -5.11 7.51 31.18 0.23 -4.87 16 22 C -0.11 -4.56 7.81 31.18 0.24 -4.32 16 23 C -0.15 -7.05 6.61 31.12 0.21 -6.85 16 24 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 25 H 0.16 4.95 8.06 -2.91 -0.02 4.93 16 26 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16 27 H 0.17 2.86 8.06 -2.92 -0.02 2.84 16 28 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.18 3.64 8.06 -2.91 -0.02 3.61 16 30 H 0.12 4.83 6.98 -2.91 -0.02 4.81 16 31 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 32 H 0.05 2.54 8.09 -2.39 -0.02 2.52 16 33 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.09 2.95 8.14 -2.38 -0.02 2.93 16 35 H 0.04 1.95 8.09 -2.38 -0.02 1.93 16 36 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -73.43 311.55 5.26 -68.17 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 1.07 Total: 17.85 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 4.20 Total: -16.15 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -1.74 Total: -70.66 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -0.30 Total: -45.99 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -73.43 5.26 -68.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859218.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.224 kcal (2) G-P(sol) polarization free energy of solvation -73.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds