Wall clock time and date at job start Mon Mar 30 2020 01:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99610 * 2 1 4 4 H 1.48503 * 109.46760 * 267.28520 * 3 2 1 5 5 H 1.48495 * 109.47596 * 27.28864 * 3 2 1 6 6 H 1.48500 * 109.46723 * 147.29067 * 3 2 1 7 7 C 1.37875 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99896 * 7.29869 * 7 2 1 9 9 C 1.50692 * 119.99802 * 187.30356 * 7 2 1 10 10 O 1.42903 * 112.84798 * 305.18071 * 9 7 2 11 11 C 1.34903 * 117.00369 * 294.81254 * 10 9 7 12 12 O 1.21625 * 119.99967 * 5.11387 * 11 10 9 13 13 C 1.46230 * 119.99960 * 185.12140 * 11 10 9 14 14 C 1.34917 * 120.00026 * 179.97438 * 13 11 10 15 15 C 1.47173 * 120.00333 * 179.97438 * 14 13 11 16 16 C 1.40288 * 120.58610 * 179.97438 * 15 14 13 17 17 C 1.38284 * 118.26071 * 179.97438 * 16 15 14 18 18 C 1.38400 * 119.33909 * 0.02562 * 17 16 15 19 19 N 1.31940 * 121.13733 * 359.97438 * 18 17 16 20 20 C 1.31654 * 121.91264 * 359.69949 * 19 18 17 21 21 C 1.53787 * 113.61499 * 173.99180 * 9 7 2 22 22 C 1.53956 * 87.01889 * 220.04559 * 21 9 7 23 23 C 1.53779 * 113.62020 * 76.37886 * 9 7 2 24 24 H 0.96997 * 120.00366 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.00559 * 359.97438 * 13 11 10 26 26 H 1.08002 * 119.99560 * 359.97438 * 14 13 11 27 27 H 1.07992 * 120.86982 * 359.97438 * 16 15 14 28 28 H 1.08000 * 120.33027 * 180.02562 * 17 16 15 29 29 H 1.07990 * 119.42915 * 179.97438 * 18 17 16 30 30 H 1.07996 * 119.74139 * 180.31126 * 20 19 18 31 31 H 1.09002 * 113.61024 * 334.56098 * 21 9 7 32 32 H 1.08999 * 113.61459 * 105.46941 * 21 9 7 33 33 H 1.09004 * 113.53338 * 270.80972 * 22 21 9 34 34 H 1.08998 * 113.74585 * 139.94418 * 22 21 9 35 35 H 1.08994 * 113.61646 * 254.53294 * 23 9 7 36 36 H 1.09005 * 113.60999 * 25.35079 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5539 2.0133 -1.3986 5 1 1.4190 2.6686 0.6419 6 1 3.5168 1.4574 0.7566 7 6 2.0046 -1.1940 0.0005 8 1 1.4711 -2.1255 -0.1179 9 6 3.5023 -1.1992 0.1664 10 8 4.1696 -0.3759 -0.7922 11 6 4.0832 -0.7490 -2.0858 12 8 3.3825 -1.6917 -2.4013 13 6 4.8323 -0.0201 -3.1085 14 6 4.7463 -0.3935 -4.4021 15 6 5.4997 0.3404 -5.4316 16 6 5.4197 -0.0377 -6.7802 17 6 6.1473 0.6857 -7.7073 18 6 6.9239 1.7486 -7.2799 19 7 6.9808 2.0826 -6.0048 20 6 6.3029 1.4306 -5.0836 21 6 4.1034 -2.6092 0.2921 22 6 5.0390 -2.0271 1.3673 23 6 3.9628 -0.9566 1.6135 24 1 -0.4850 0.8400 0.0004 25 1 5.4543 0.8171 -2.8285 26 1 4.1246 -1.2311 -4.6822 27 1 4.8060 -0.8719 -7.0863 28 1 6.1099 0.4239 -8.7544 29 1 7.4930 2.3143 -8.0026 30 1 6.3715 1.7373 -4.0504 31 1 3.4026 -3.3497 0.6777 32 1 4.6232 -2.9438 -0.6056 33 1 5.9692 -1.6265 0.9642 34 1 5.1973 -2.6908 2.2173 35 1 4.3692 0.0408 1.7810 36 1 3.2229 -1.2432 2.3609 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810859220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:02 Heat of formation + Delta-G solvation = -1.703249 kcal Electronic energy + Delta-G solvation = -20394.817002 eV Core-core repulsion = 17231.747759 eV Total energy + Delta-G solvation = -3163.069243 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.31726 -39.84519 -37.41523 -34.74112 -34.29137 -32.49403 -32.34971 -30.03585 -27.02587 -25.13166 -24.92288 -23.81014 -22.69432 -21.65390 -19.49070 -18.43391 -17.70540 -17.24288 -16.66405 -15.83469 -15.47380 -15.34321 -14.97356 -14.36848 -14.17625 -14.01885 -13.87603 -13.31682 -13.22785 -12.70889 -12.15053 -11.94348 -11.86032 -11.51444 -11.40028 -11.10990 -10.85749 -10.43013 -10.31995 -10.00511 -9.90749 -9.87059 -9.70519 -9.62058 -8.94204 -8.59472 -8.58798 -8.47786 -6.14653 -4.19249 0.30335 1.01798 1.91529 3.29198 3.34536 3.47584 3.55126 3.67465 3.82082 4.19271 4.43871 4.56716 4.65658 4.67821 4.79243 5.10040 5.15499 5.26765 5.44188 5.47671 5.55381 5.62662 5.76976 5.82352 5.83931 6.12444 6.27141 6.29715 6.38372 6.47311 6.60404 6.64557 6.76892 6.98729 7.23253 7.41387 7.71888 7.73168 8.38970 8.79493 8.93257 9.47355 10.96281 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022453 B = 0.004946 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.754944 B = 5660.281380 C = 6030.063028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.080 3.920 3 Si 0.879 3.121 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.247 1.247 7 C -0.513 4.513 8 H 0.083 0.917 9 C 0.190 3.810 10 O -0.348 6.348 11 C 0.486 3.514 12 O -0.481 6.481 13 C -0.160 4.160 14 C -0.042 4.042 15 C -0.112 4.112 16 C -0.057 4.057 17 C -0.174 4.174 18 C 0.098 3.902 19 N -0.484 5.484 20 C 0.113 3.887 21 C -0.141 4.141 22 C -0.148 4.148 23 C -0.121 4.121 24 H 0.265 0.735 25 H 0.134 0.866 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.138 0.862 29 H 0.156 0.844 30 H 0.162 0.838 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.587 1.333 -10.729 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.124 4.124 3 Si 0.708 3.292 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.171 1.171 7 C -0.549 4.549 8 H 0.101 0.899 9 C 0.155 3.845 10 O -0.266 6.266 11 C 0.330 3.670 12 O -0.369 6.369 13 C -0.179 4.179 14 C -0.061 4.061 15 C -0.114 4.114 16 C -0.083 4.083 17 C -0.194 4.194 18 C -0.058 4.058 19 N -0.192 5.192 20 C -0.044 4.044 21 C -0.179 4.179 22 C -0.185 4.185 23 C -0.158 4.158 24 H 0.075 0.925 25 H 0.152 0.848 26 H 0.160 0.840 27 H 0.159 0.841 28 H 0.156 0.844 29 H 0.173 0.827 30 H 0.179 0.821 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.718 1.850 -10.526 17.389 hybrid contribution -0.384 0.185 -0.397 0.583 sum 13.334 2.035 -10.923 17.356 Atomic orbital electron populations 1.69930 1.06462 1.27301 1.48649 1.24994 0.94694 0.99459 0.93236 0.86848 0.80618 0.82719 0.79021 1.20752 1.22691 1.17147 1.21058 0.87865 0.95320 1.50705 0.89860 1.20813 0.92088 0.87002 0.84586 1.86023 1.70068 1.54330 1.16137 1.20718 0.80191 0.82919 0.83197 1.90842 1.35819 1.27776 1.82455 1.22595 1.01540 1.01433 0.92312 1.22193 0.95150 0.97633 0.91165 1.20044 0.99430 0.97764 0.94166 1.21850 0.96306 0.98365 0.91731 1.22102 0.98805 0.97470 1.00976 1.22899 0.95838 0.94420 0.92675 1.67661 1.20464 1.29123 1.01999 1.23226 0.91041 0.90683 0.99470 1.23351 0.98200 0.98514 0.97831 1.22967 0.97472 0.99019 0.99050 1.23256 0.97480 0.98234 0.96840 0.92513 0.84829 0.84040 0.84130 0.84448 0.82667 0.82080 0.89563 0.92661 0.91128 0.92326 0.91926 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.32 13.96 55.43 0.77 -26.54 16 2 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 3 Si 0.88 22.34 25.58 -169.99 -4.35 17.99 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.25 -5.87 5.12 56.52 0.29 -5.58 16 7 C -0.51 -14.61 7.84 -34.45 -0.27 -14.88 16 8 H 0.08 2.62 8.06 -52.49 -0.42 2.20 16 9 C 0.19 4.54 0.09 -90.96 -0.01 4.53 16 10 O -0.35 -8.04 6.96 -41.05 -0.29 -8.33 16 11 C 0.49 10.62 7.10 33.94 0.24 10.86 16 12 O -0.48 -11.79 14.38 -19.36 -0.28 -12.07 16 13 C -0.16 -2.66 9.55 -37.55 -0.36 -3.01 16 14 C -0.04 -0.60 9.48 -37.13 -0.35 -0.96 16 15 C -0.11 -1.37 5.88 -104.91 -0.62 -1.99 16 16 C -0.06 -0.57 9.95 -38.79 -0.39 -0.95 16 17 C -0.17 -1.48 10.09 -39.50 -0.40 -1.88 16 18 C 0.10 0.94 11.17 -17.45 -0.19 0.75 16 19 N -0.48 -5.97 10.34 -12.83 -0.13 -6.10 16 20 C 0.11 1.40 10.59 -17.04 -0.18 1.22 16 21 C -0.14 -2.95 6.89 -25.82 -0.18 -3.13 16 22 C -0.15 -2.64 8.02 -25.82 -0.21 -2.85 16 23 C -0.12 -2.51 6.57 -25.92 -0.17 -2.68 16 24 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 25 H 0.13 1.87 6.10 -52.49 -0.32 1.55 16 26 H 0.14 2.03 7.52 -52.49 -0.39 1.64 16 27 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 29 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.16 1.80 6.19 -52.49 -0.32 1.48 16 31 H 0.09 1.80 8.09 -51.93 -0.42 1.38 16 32 H 0.05 1.14 7.34 -51.93 -0.38 0.76 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.28 6.75 -51.93 -0.35 0.92 16 36 H 0.09 1.96 8.09 -51.93 -0.42 1.54 16 LS Contribution 306.17 15.07 4.61 4.61 Total: -1.00 -33.75 306.17 -7.23 -40.98 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.40 Total: 2.16 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -3.18 Total: -12.71 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.64 Total: -32.64 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.56 Total: -20.40 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.35 Total: 17.99 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.75 -7.23 -40.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.280 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds