Wall clock time and date at job start Mon Mar 30 2020 01:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99610 * 2 1 4 4 H 1.48503 * 109.46760 * 267.28520 * 3 2 1 5 5 H 1.48495 * 109.47596 * 27.28864 * 3 2 1 6 6 H 1.48500 * 109.46723 * 147.29067 * 3 2 1 7 7 C 1.37875 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99896 * 7.29869 * 7 2 1 9 9 C 1.50692 * 119.99802 * 187.30356 * 7 2 1 10 10 O 1.42903 * 112.84798 * 305.18071 * 9 7 2 11 11 C 1.34903 * 117.00369 * 294.81254 * 10 9 7 12 12 O 1.21625 * 119.99967 * 5.11387 * 11 10 9 13 13 C 1.46230 * 119.99960 * 185.12140 * 11 10 9 14 14 C 1.34917 * 120.00026 * 179.97438 * 13 11 10 15 15 C 1.47173 * 120.00333 * 179.97438 * 14 13 11 16 16 C 1.40288 * 120.58610 * 179.97438 * 15 14 13 17 17 C 1.38284 * 118.26071 * 179.97438 * 16 15 14 18 18 C 1.38400 * 119.33909 * 0.02562 * 17 16 15 19 19 N 1.31940 * 121.13733 * 359.97438 * 18 17 16 20 20 C 1.31654 * 121.91264 * 359.69949 * 19 18 17 21 21 C 1.53787 * 113.61499 * 173.99180 * 9 7 2 22 22 C 1.53956 * 87.01889 * 220.04559 * 21 9 7 23 23 C 1.53779 * 113.62020 * 76.37886 * 9 7 2 24 24 H 0.96997 * 120.00366 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.00559 * 359.97438 * 13 11 10 26 26 H 1.08002 * 119.99560 * 359.97438 * 14 13 11 27 27 H 1.07992 * 120.86982 * 359.97438 * 16 15 14 28 28 H 1.08000 * 120.33027 * 180.02562 * 17 16 15 29 29 H 1.07990 * 119.42915 * 179.97438 * 18 17 16 30 30 H 1.07996 * 119.74139 * 180.31126 * 20 19 18 31 31 H 1.09002 * 113.61024 * 334.56098 * 21 9 7 32 32 H 1.08999 * 113.61459 * 105.46941 * 21 9 7 33 33 H 1.09004 * 113.53338 * 270.80972 * 22 21 9 34 34 H 1.08998 * 113.74585 * 139.94418 * 22 21 9 35 35 H 1.08994 * 113.61646 * 254.53294 * 23 9 7 36 36 H 1.09005 * 113.60999 * 25.35079 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5539 2.0133 -1.3986 5 1 1.4190 2.6686 0.6419 6 1 3.5168 1.4574 0.7566 7 6 2.0046 -1.1940 0.0005 8 1 1.4711 -2.1255 -0.1179 9 6 3.5023 -1.1992 0.1664 10 8 4.1696 -0.3759 -0.7922 11 6 4.0832 -0.7490 -2.0858 12 8 3.3825 -1.6917 -2.4013 13 6 4.8323 -0.0201 -3.1085 14 6 4.7463 -0.3935 -4.4021 15 6 5.4997 0.3404 -5.4316 16 6 5.4197 -0.0377 -6.7802 17 6 6.1473 0.6857 -7.7073 18 6 6.9239 1.7486 -7.2799 19 7 6.9808 2.0826 -6.0048 20 6 6.3029 1.4306 -5.0836 21 6 4.1034 -2.6092 0.2921 22 6 5.0390 -2.0271 1.3673 23 6 3.9628 -0.9566 1.6135 24 1 -0.4850 0.8400 0.0004 25 1 5.4543 0.8171 -2.8285 26 1 4.1246 -1.2311 -4.6822 27 1 4.8060 -0.8719 -7.0863 28 1 6.1099 0.4239 -8.7544 29 1 7.4930 2.3143 -8.0026 30 1 6.3715 1.7373 -4.0504 31 1 3.4026 -3.3497 0.6777 32 1 4.6232 -2.9438 -0.6056 33 1 5.9692 -1.6265 0.9642 34 1 5.1973 -2.6908 2.2173 35 1 4.3692 0.0408 1.7810 36 1 3.2229 -1.2432 2.3609 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810859220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:02 Heat of formation + Delta-G solvation = -22.941917 kcal Electronic energy + Delta-G solvation = -20395.737980 eV Core-core repulsion = 17231.747759 eV Total energy + Delta-G solvation = -3163.990221 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.66825 -41.06290 -39.07805 -36.29318 -35.59608 -34.56712 -33.29745 -31.06973 -29.00316 -26.63682 -26.35509 -24.70504 -24.20155 -23.03550 -20.81842 -20.10553 -19.42347 -18.42319 -17.88723 -17.40601 -17.15628 -16.64647 -16.18858 -16.12829 -15.58362 -15.02855 -14.96861 -14.89114 -14.65925 -14.04572 -13.85619 -13.43382 -13.21606 -13.08239 -12.99873 -12.75794 -12.29746 -12.03434 -11.91243 -11.88554 -11.66974 -11.36069 -11.00099 -10.66713 -10.62774 -10.49261 -10.39959 -9.56313 -8.39112 -6.47329 -0.71910 0.24748 0.79074 1.30983 1.32211 1.46758 2.03378 2.11517 2.32417 2.86713 2.99145 3.37531 3.58573 3.74827 3.85693 3.87672 3.94106 4.02225 4.11353 4.14493 4.20579 4.48709 4.52392 4.76600 4.82002 4.86811 4.96221 5.04457 5.07152 5.10458 5.19864 5.28241 5.31134 5.52350 5.59326 5.67212 5.81436 6.28366 6.57006 6.91641 7.05840 7.24673 8.76283 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022453 B = 0.004946 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.754944 B = 5660.281380 C = 6030.063028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.217 1.217 7 C -0.515 4.515 8 H 0.032 0.968 9 C 0.171 3.829 10 O -0.347 6.347 11 C 0.479 3.521 12 O -0.526 6.526 13 C -0.197 4.197 14 C -0.001 4.001 15 C -0.138 4.138 16 C -0.054 4.054 17 C -0.166 4.166 18 C 0.101 3.899 19 N -0.512 5.512 20 C 0.107 3.893 21 C -0.144 4.144 22 C -0.118 4.118 23 C -0.120 4.120 24 H 0.267 0.733 25 H 0.160 0.840 26 H 0.136 0.864 27 H 0.161 0.839 28 H 0.176 0.824 29 H 0.188 0.812 30 H 0.165 0.835 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.795 2.576 -12.309 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.173 4.173 3 Si 0.759 3.241 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.140 1.140 7 C -0.553 4.553 8 H 0.050 0.950 9 C 0.135 3.865 10 O -0.265 6.265 11 C 0.326 3.674 12 O -0.417 6.417 13 C -0.215 4.215 14 C -0.020 4.020 15 C -0.141 4.141 16 C -0.079 4.079 17 C -0.185 4.185 18 C -0.055 4.055 19 N -0.221 5.221 20 C -0.050 4.050 21 C -0.182 4.182 22 C -0.155 4.155 23 C -0.158 4.158 24 H 0.075 0.925 25 H 0.177 0.823 26 H 0.154 0.846 27 H 0.178 0.822 28 H 0.193 0.807 29 H 0.205 0.795 30 H 0.182 0.818 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 16.958 3.087 -12.098 21.058 hybrid contribution -1.373 -0.291 -0.194 1.416 sum 15.585 2.796 -12.292 20.045 Atomic orbital electron populations 1.70071 1.08312 1.28211 1.51158 1.25812 0.95339 1.03122 0.93042 0.85974 0.80543 0.78188 0.79422 1.20649 1.22491 1.13951 1.21218 0.90861 0.93282 1.49895 0.95019 1.20938 0.89490 0.89563 0.86528 1.85992 1.69559 1.54109 1.16835 1.21644 0.79683 0.82638 0.83413 1.90818 1.38163 1.29930 1.82739 1.22459 1.04001 1.03473 0.91615 1.22341 0.92703 0.96016 0.90988 1.19958 1.00807 0.98662 0.94633 1.22219 0.96033 0.98726 0.90950 1.22503 0.97219 0.96265 1.02522 1.23568 0.95223 0.94445 0.92282 1.67714 1.21251 1.29890 1.03211 1.23341 0.90962 0.90654 1.00011 1.23322 0.98855 0.96843 0.99186 1.22853 0.96565 0.97555 0.98569 1.23234 0.98438 0.99979 0.94106 0.92456 0.82293 0.84608 0.82162 0.80703 0.79545 0.81760 0.90594 0.92928 0.89150 0.89071 0.90877 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.52 13.96 21.45 0.30 -60.22 16 2 C 0.03 1.57 5.47 84.65 0.46 2.03 16 3 Si 0.93 46.34 25.58 68.60 1.75 48.10 16 4 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 6 H -0.22 -9.61 5.12 99.48 0.51 -9.10 16 7 C -0.52 -30.72 7.84 25.60 0.20 -30.52 16 8 H 0.03 2.15 8.06 -2.91 -0.02 2.12 16 9 C 0.17 8.18 0.09 -11.01 0.00 8.18 16 10 O -0.35 -15.88 6.96 -58.18 -0.40 -16.29 16 11 C 0.48 21.18 7.10 69.90 0.50 21.67 16 12 O -0.53 -26.82 14.38 19.43 0.28 -26.54 16 13 C -0.20 -6.43 9.55 23.58 0.23 -6.21 16 14 C 0.00 -0.03 9.48 23.85 0.23 0.19 16 15 C -0.14 -3.11 5.88 -20.05 -0.12 -3.23 16 16 C -0.05 -0.90 9.95 22.78 0.23 -0.68 16 17 C -0.17 -2.10 10.09 22.32 0.23 -1.88 16 18 C 0.10 1.55 11.17 84.72 0.95 2.49 16 19 N -0.51 -11.29 10.34 -194.50 -2.01 -13.30 16 20 C 0.11 2.45 10.59 85.10 0.90 3.35 16 21 C -0.14 -6.03 6.89 31.18 0.21 -5.81 16 22 C -0.12 -3.89 8.02 31.18 0.25 -3.64 16 23 C -0.12 -4.79 6.57 31.12 0.20 -4.59 16 24 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 25 H 0.16 4.24 6.10 -2.91 -0.02 4.22 16 26 H 0.14 3.88 7.52 -2.91 -0.02 3.86 16 27 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 28 H 0.18 0.92 8.06 -2.91 -0.02 0.89 16 29 H 0.19 1.57 8.06 -2.92 -0.02 1.54 16 30 H 0.17 3.43 6.19 -2.91 -0.02 3.41 16 31 H 0.08 3.26 8.09 -2.39 -0.02 3.24 16 32 H 0.05 2.19 7.34 -2.39 -0.02 2.17 16 33 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.07 2.75 6.75 -2.39 -0.02 2.74 16 36 H 0.09 3.67 8.09 -2.38 -0.02 3.65 16 Total: -1.00 -77.93 306.17 5.27 -72.66 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.89 Total: 14.21 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 4.46 Total: -18.63 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -1.71 Total: -73.52 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -0.13 Total: -42.83 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.75 Total: 48.10 kcal Total: -77.93 5.27 -72.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810859220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.723 kcal (2) G-P(sol) polarization free energy of solvation -77.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds