Wall clock time and date at job start Mon Mar 30 2020 01:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 119.99914 * 2 1 4 4 H 1.48501 * 109.47060 * 270.00023 * 3 2 1 5 5 H 1.48502 * 109.47282 * 30.00218 * 3 2 1 6 6 H 1.48508 * 109.47146 * 150.00409 * 3 2 1 7 7 C 1.38952 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99826 * 359.97438 * 7 2 1 9 9 N 1.37098 * 119.99822 * 180.02562 * 7 2 1 10 10 C 1.34778 * 119.99427 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00375 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00089 * 179.97438 * 10 9 7 13 13 O 1.45201 * 109.47505 * 180.02562 * 12 10 9 14 14 C 1.34231 * 116.99869 * 180.02562 * 13 12 10 15 15 O 1.20825 * 119.99975 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99819 * 179.97438 * 14 13 12 17 17 F 1.39905 * 109.46943 * 309.99746 * 16 14 13 18 18 C 1.52997 * 109.47078 * 69.99652 * 16 14 13 19 19 C 1.53002 * 109.47143 * 180.02562 * 18 16 14 20 20 C 1.53008 * 109.46800 * 300.00009 * 19 18 16 21 21 C 1.53001 * 109.47105 * 60.00402 * 20 19 18 22 22 C 1.52997 * 109.47265 * 189.99848 * 16 14 13 23 23 H 0.97003 * 119.99760 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00303 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.47064 * 59.99611 * 12 10 9 26 26 H 1.09007 * 109.47453 * 300.00335 * 12 10 9 27 27 H 1.09004 * 109.47261 * 300.00035 * 18 16 14 28 28 H 1.09002 * 109.47153 * 60.00207 * 18 16 14 29 29 H 1.09000 * 109.47312 * 180.02562 * 19 18 16 30 30 H 1.09002 * 109.47067 * 59.99982 * 19 18 16 31 31 H 1.08992 * 109.47290 * 299.99830 * 20 19 18 32 32 H 1.09001 * 109.46630 * 180.02562 * 20 19 18 33 33 H 1.08996 * 109.46778 * 179.97438 * 21 20 19 34 34 H 1.08992 * 109.47056 * 59.99291 * 21 20 19 35 35 H 1.09002 * 109.47045 * 299.99841 * 22 16 14 36 36 H 1.09000 * 109.47140 * 59.99748 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3798 -1.2032 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4472 -3.4210 0.0000 12 6 5.5607 -2.3706 0.0000 13 8 6.0447 -3.7395 -0.0006 14 6 7.3754 -3.9154 -0.0002 15 8 8.1114 -2.9571 0.0003 16 6 7.9514 -5.3079 -0.0002 17 9 7.3459 -6.0630 1.0100 18 6 7.6909 -5.9676 -1.3558 19 6 8.2751 -7.3816 -1.3556 20 6 9.7828 -7.3105 -1.1044 21 6 10.0433 -6.6509 0.2514 22 6 9.4590 -5.2363 0.2508 23 1 -0.4850 0.8401 0.0004 24 1 3.8648 -0.3632 0.0004 25 1 5.9240 -1.8567 0.8900 26 1 5.9241 -1.8567 -0.8900 27 1 6.6168 -6.0186 -1.5346 28 1 8.1627 -5.3792 -2.1428 29 1 8.0899 -7.8515 -2.3216 30 1 7.8030 -7.9697 -0.5686 31 1 10.2549 -6.7224 -1.8913 32 1 10.1990 -8.3179 -1.1047 33 1 11.1172 -6.6006 0.4305 34 1 9.5711 -7.2389 1.0382 35 1 9.9308 -4.6480 -0.5362 36 1 9.6446 -4.7663 1.2166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811249904.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:06 Heat of formation + Delta-G solvation = -202.675237 kcal Electronic energy + Delta-G solvation = -21256.686961 eV Core-core repulsion = 17654.133694 eV Total energy + Delta-G solvation = -3602.553267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.13569 -41.86812 -40.29123 -38.68660 -37.60970 -36.13057 -33.90592 -32.19376 -31.90544 -30.22027 -26.71596 -25.13948 -23.86355 -22.12898 -21.60530 -20.72149 -20.56556 -19.29918 -18.34177 -17.96940 -17.54841 -17.01554 -16.77013 -16.56541 -15.79103 -15.64290 -15.59294 -14.91226 -14.58198 -14.51083 -14.34507 -14.18191 -13.99312 -13.48151 -13.36223 -13.25607 -13.02896 -12.93724 -12.48719 -12.15838 -12.02833 -12.01480 -11.95128 -11.62039 -11.50831 -11.25037 -11.12843 -10.65888 -10.37429 -8.48545 -6.12333 0.70941 1.09572 1.28811 1.31762 1.43262 1.71196 2.18380 2.60668 3.05325 3.12910 3.24335 3.36529 3.52150 3.80896 4.00752 4.03842 4.05604 4.08749 4.19185 4.29615 4.40608 4.58102 4.75434 4.91718 4.97449 5.01954 5.12098 5.13590 5.26759 5.30136 5.44036 5.48928 5.81767 6.27074 6.47238 6.73605 7.21641 7.73506 8.68129 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.043186 B = 0.003693 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.197985 B = 7579.477760 C = 7919.247882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.963 3.037 4 H -0.253 1.253 5 H -0.271 1.271 6 H -0.232 1.232 7 C -0.336 4.336 8 H 0.060 0.940 9 N -0.573 5.573 10 C 0.446 3.554 11 O -0.609 6.609 12 C 0.063 3.937 13 O -0.339 6.339 14 C 0.443 3.557 15 O -0.501 6.501 16 C 0.140 3.860 17 F -0.194 7.194 18 C -0.142 4.142 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.123 4.123 23 H 0.283 0.717 24 H 0.394 0.606 25 H 0.117 0.883 26 H 0.124 0.876 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.640 -7.900 -2.653 26.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.207 4.207 3 Si 0.782 3.218 4 H -0.177 1.177 5 H -0.196 1.196 6 H -0.155 1.155 7 C -0.465 4.465 8 H 0.078 0.922 9 N -0.215 5.215 10 C 0.233 3.767 11 O -0.494 6.494 12 C -0.014 4.014 13 O -0.254 6.254 14 C 0.284 3.716 15 O -0.389 6.389 16 C 0.120 3.880 17 F -0.175 7.175 18 C -0.180 4.180 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.161 4.161 23 H 0.093 0.907 24 H 0.230 0.770 25 H 0.135 0.865 26 H 0.141 0.859 27 H 0.091 0.909 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 24.200 -8.205 -2.622 25.687 hybrid contribution -0.706 1.164 0.298 1.394 sum 23.494 -7.041 -2.324 24.636 Atomic orbital electron populations 1.69781 1.08124 1.29663 1.48819 1.26111 0.96475 1.02693 0.95413 0.85402 0.79535 0.76601 0.80275 1.17716 1.19586 1.15508 1.19013 0.80713 0.95392 1.51377 0.92215 1.41788 1.06123 1.06921 1.66667 1.20140 0.89249 0.84103 0.83173 1.90593 1.70904 1.32672 1.55184 1.22726 0.90937 0.81088 1.06599 1.86621 1.24457 1.31604 1.82682 1.24784 0.80541 0.93785 0.72492 1.90648 1.60419 1.42687 1.45161 1.21186 0.94666 0.82423 0.89707 1.92917 1.85381 1.76860 1.62312 1.22246 1.03425 0.99335 0.92970 1.21553 0.96677 0.93671 1.03551 1.21629 0.94876 1.02243 0.97045 1.21592 1.02174 0.93065 0.98680 1.22094 0.88221 1.00869 1.04898 0.90724 0.76999 0.86505 0.85853 0.90912 0.87771 0.89124 0.91943 0.90329 0.89691 0.88612 0.91838 0.87821 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.80 13.96 21.66 0.30 -54.50 16 2 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 3 Si 0.96 37.83 27.74 68.60 1.90 39.73 16 4 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.23 -7.69 6.52 99.48 0.65 -7.04 16 7 C -0.34 -19.63 10.16 84.04 0.85 -18.77 16 8 H 0.06 4.15 7.39 -2.91 -0.02 4.13 16 9 N -0.57 -27.22 5.09 -306.98 -1.56 -28.78 16 10 C 0.45 21.08 7.86 87.66 0.69 21.77 16 11 O -0.61 -35.50 16.08 15.72 0.25 -35.25 16 12 C 0.06 2.19 5.94 71.24 0.42 2.61 16 13 O -0.34 -12.42 9.75 -45.07 -0.44 -12.86 16 14 C 0.44 13.27 6.91 71.24 0.49 13.76 16 15 O -0.50 -15.17 15.73 21.97 0.35 -14.83 16 16 C 0.14 3.34 1.16 -11.54 -0.01 3.33 16 17 F -0.19 -5.56 15.75 44.97 0.71 -4.85 16 18 C -0.14 -2.80 4.98 30.59 0.15 -2.65 16 19 C -0.12 -1.72 5.80 30.60 0.18 -1.54 16 20 C -0.12 -1.29 5.92 30.60 0.18 -1.11 16 21 C -0.12 -1.49 5.80 30.61 0.18 -1.31 16 22 C -0.12 -2.15 4.35 30.61 0.13 -2.02 16 23 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 24 H 0.39 15.22 5.76 -92.71 -0.53 14.69 16 25 H 0.12 3.43 8.13 -2.39 -0.02 3.41 16 26 H 0.12 3.46 8.13 -2.38 -0.02 3.44 16 27 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.07 7.80 -2.39 -0.02 1.05 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.93 7.80 -2.39 -0.02 0.91 16 35 H 0.10 1.59 7.99 -2.39 -0.02 1.57 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -76.83 307.53 5.75 -71.09 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.51 Total: 26.08 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 3.73 Total: 14.16 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -1.26 Total: -83.27 kcal Atomic # 8 Polarization: -63.09 SS G_CDS: 0.16 Total: -62.94 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.71 Total: -4.85 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 1.90 Total: 39.73 kcal Total: -76.83 5.75 -71.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811249904.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.589 kcal (2) G-P(sol) polarization free energy of solvation -76.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds