Wall clock time and date at job start Mon Mar 30 2020 01:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37971 * 119.92260 * 2 1 4 4 C 1.39616 * 119.84000 * 180.23386 * 3 2 1 5 5 C 1.43205 * 120.14614 * 179.74514 * 4 3 2 6 6 N 4.80119 * 134.70147 * 359.74911 * 2 1 3 7 7 C 1.39652 * 119.70181 * 359.46945 * 4 3 2 8 8 C 1.37927 * 119.84339 * 0.27670 * 7 4 3 9 9 C 1.38342 * 119.92268 * 179.72534 * 2 1 3 10 10 C 1.50696 * 119.85000 * 0.02562 * 9 2 1 11 11 O 1.45200 * 109.47322 * 180.02562 * 10 9 2 12 12 C 1.34232 * 117.00041 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99901 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99935 * 179.97438 * 12 11 10 15 15 C 1.52995 * 109.47007 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47007 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99897 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99998 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99771 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47060 * 90.00378 * 20 18 16 22 22 H 1.48498 * 109.47141 * 210.00318 * 20 18 16 23 23 H 1.48504 * 109.47236 * 330.00397 * 20 18 16 24 24 H 1.09005 * 109.46988 * 270.27392 * 1 2 3 25 25 H 1.08997 * 109.47313 * 30.28022 * 1 2 3 26 26 H 1.09002 * 109.47286 * 150.27466 * 1 2 3 27 27 H 1.07990 * 120.07818 * 359.97438 * 3 2 1 28 28 H 1.07994 * 120.07286 * 180.29644 * 7 4 3 29 29 H 1.08001 * 119.91632 * 180.02562 * 8 7 4 30 30 H 1.09004 * 109.46716 * 300.01979 * 10 9 2 31 31 H 1.09000 * 109.47309 * 60.01902 * 10 9 2 32 32 H 1.08997 * 109.47036 * 300.00147 * 14 12 11 33 33 H 1.08998 * 109.46923 * 59.99786 * 14 12 11 34 34 H 1.09003 * 109.47335 * 300.00467 * 15 14 12 35 35 H 1.08998 * 109.47405 * 60.00141 * 15 14 12 36 36 H 0.97003 * 120.00038 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1958 0.0000 4 6 3.5914 1.1938 -0.0049 5 6 4.3123 2.4311 -0.0105 6 7 4.8842 3.4126 -0.0149 7 6 4.2816 -0.0202 0.0014 8 6 3.5808 -1.2082 0.0067 9 6 2.1971 -1.1990 0.0057 10 6 1.4384 -2.5010 0.0114 11 8 2.3776 -3.6084 0.0174 12 6 1.8596 -4.8468 0.0235 13 8 0.6611 -5.0003 0.0242 14 6 2.7728 -6.0455 0.0294 15 6 1.9344 -7.3253 0.0363 16 6 2.8477 -8.5241 0.0416 17 1 3.9189 -8.3868 0.0406 18 6 2.3156 -9.7960 0.0488 19 7 1.0111 -9.9631 0.0506 20 14 3.4475 -11.2819 0.0561 21 1 3.7483 -11.6682 1.4581 22 1 2.7826 -12.4142 -0.6375 23 1 4.7116 -10.9447 -0.6466 24 1 -0.3633 0.0049 1.0277 25 1 -0.3634 0.8874 -0.5182 26 1 -0.3634 -0.8924 -0.5096 27 1 1.6553 2.1310 -0.0004 28 1 5.3615 -0.0287 0.0024 29 1 4.1135 -2.1477 0.0120 30 1 0.8109 -2.5520 0.9013 31 1 0.8121 -2.5606 -0.8787 32 1 3.4017 -6.0275 -0.8606 33 1 3.4017 -6.0188 0.9193 34 1 1.3057 -7.3430 0.9266 35 1 1.3052 -7.3523 -0.8533 36 1 0.6367 -10.8580 0.0552 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:25 Heat of formation + Delta-G solvation = -52.781908 kcal Electronic energy + Delta-G solvation = -19102.295940 eV Core-core repulsion = 15937.011760 eV Total energy + Delta-G solvation = -3165.284180 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.47537 -39.67307 -36.99558 -36.18511 -33.65361 -33.54164 -32.22247 -31.15580 -28.03541 -27.08646 -25.85245 -23.08725 -22.22010 -21.84018 -19.84772 -18.59513 -17.47776 -16.76765 -16.43928 -16.13418 -15.71453 -14.90554 -14.72355 -14.51087 -14.46914 -14.05129 -13.60776 -13.50512 -13.30467 -13.29707 -12.59455 -12.49197 -12.47305 -12.28588 -12.00116 -11.55894 -11.38051 -11.19353 -10.99472 -10.68081 -10.67623 -10.10271 -10.01902 -9.62391 -9.22424 -9.22211 -8.97840 -8.41389 -6.05259 -4.10294 0.37790 0.95824 2.33679 2.57863 2.72489 2.89984 3.29298 3.35925 3.38499 3.48818 3.52301 4.33865 4.41571 4.45431 4.49822 4.77049 4.93168 5.13630 5.14701 5.24214 5.30423 5.32362 5.34128 5.49756 5.57592 5.78209 5.87027 5.93311 6.05577 6.10278 6.21051 6.45092 6.56552 6.84204 7.14689 7.61964 7.68127 7.93630 8.17421 8.33511 8.96777 9.54102 11.05699 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.036431 B = 0.002831 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.385179 B = 9886.436813 C =10623.769697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.080 4.080 3 C -0.070 4.070 4 C -0.032 4.032 5 C 0.258 3.742 6 N -0.423 5.423 7 C -0.074 4.074 8 C -0.094 4.094 9 C -0.056 4.056 10 C 0.100 3.900 11 O -0.364 6.364 12 C 0.459 3.541 13 O -0.503 6.503 14 C -0.103 4.103 15 C 0.033 3.967 16 C -0.529 4.529 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.889 5.889 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.148 0.852 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.748 20.294 -0.076 20.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.080 4.080 3 C -0.090 4.090 4 C -0.035 4.035 5 C -0.057 4.057 6 N -0.098 5.098 7 C -0.094 4.094 8 C -0.112 4.112 9 C -0.057 4.057 10 C 0.026 3.974 11 O -0.283 6.283 12 C 0.302 3.698 13 O -0.389 6.389 14 C -0.140 4.140 15 C -0.004 4.004 16 C -0.567 4.567 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.152 0.848 28 H 0.153 0.847 29 H 0.166 0.834 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.106 21.664 -0.087 21.766 hybrid contribution 0.190 -1.148 0.019 1.164 sum 2.296 20.515 -0.068 20.644 Atomic orbital electron populations 1.20906 0.90175 1.03687 1.03197 1.19513 0.96581 0.91436 1.00486 1.20944 0.91727 0.98189 0.98181 1.15997 0.92228 0.87045 1.08273 1.25736 0.93456 0.92913 0.93584 1.81257 1.08517 1.10949 1.09048 1.21215 1.00403 0.90490 0.97321 1.21073 0.93361 0.98739 0.98019 1.19817 0.94388 0.93265 0.98253 1.21682 0.90481 0.81838 1.03395 1.86513 1.40961 1.15680 1.85112 1.24812 0.89875 0.83525 0.71542 1.90649 1.17266 1.86157 1.44860 1.21785 0.98299 0.89854 1.04104 1.19024 0.94673 0.87837 0.98916 1.21145 0.92988 0.90698 1.51898 0.92286 1.25021 0.95053 0.99170 0.95088 1.69987 1.10488 1.22426 1.49853 0.86541 0.80707 0.82270 0.78154 1.20592 1.21187 1.19779 0.90335 0.90885 0.90736 0.84811 0.84734 0.83385 0.89483 0.89464 0.88826 0.88835 0.95578 0.95571 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.59 36.01 0.35 -0.40 16 2 C -0.08 -0.62 5.87 -104.68 -0.61 -1.24 16 3 C -0.07 -0.50 9.41 -39.17 -0.37 -0.87 16 4 C -0.03 -0.26 5.73 -106.93 -0.61 -0.87 16 5 C 0.26 2.50 15.33 -22.47 -0.34 2.16 16 6 N -0.42 -5.05 18.54 41.83 0.78 -4.28 16 7 C -0.07 -0.58 9.76 -39.17 -0.38 -0.96 16 8 C -0.09 -0.84 9.36 -39.64 -0.37 -1.21 16 9 C -0.06 -0.53 5.89 -104.53 -0.62 -1.14 16 10 C 0.10 1.13 4.56 36.00 0.16 1.29 16 11 O -0.36 -5.12 8.67 -39.26 -0.34 -5.46 16 12 C 0.46 8.18 7.96 36.01 0.29 8.46 16 13 O -0.50 -10.55 15.73 -18.75 -0.29 -10.85 16 14 C -0.10 -1.95 5.75 -27.88 -0.16 -2.11 16 15 C 0.03 0.82 4.26 -27.88 -0.12 0.71 16 16 C -0.53 -14.33 9.11 -34.44 -0.31 -14.64 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 20 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 26 H 0.07 0.48 6.62 -51.93 -0.34 0.14 16 27 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 28 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 29 H 0.15 1.33 6.97 -52.49 -0.37 0.96 16 30 H 0.09 0.96 8.13 -51.93 -0.42 0.54 16 31 H 0.09 0.96 7.47 -51.93 -0.39 0.57 16 32 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 34 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 325.19 15.07 4.90 4.90 Total: -1.00 -32.08 325.19 -6.88 -38.97 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -4.44 Total: -4.26 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -3.20 Total: -9.28 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 1.51 Total: -29.96 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.64 Total: -16.31 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.08 -6.88 -38.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.815 kcal (2) G-P(sol) polarization free energy of solvation -32.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds