Wall clock time and date at job start Mon Mar 30 2020 01:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37971 * 119.92260 * 2 1 4 4 C 1.39616 * 119.84000 * 180.23386 * 3 2 1 5 5 C 1.43205 * 120.14614 * 179.74514 * 4 3 2 6 6 N 4.80119 * 134.70147 * 359.74911 * 2 1 3 7 7 C 1.39652 * 119.70181 * 359.46945 * 4 3 2 8 8 C 1.37927 * 119.84339 * 0.27670 * 7 4 3 9 9 C 1.38342 * 119.92268 * 179.72534 * 2 1 3 10 10 C 1.50696 * 119.85000 * 0.02562 * 9 2 1 11 11 O 1.45200 * 109.47322 * 180.02562 * 10 9 2 12 12 C 1.34232 * 117.00041 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99901 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99935 * 179.97438 * 12 11 10 15 15 C 1.52995 * 109.47007 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47007 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99897 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99998 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99771 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00072 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47060 * 90.00378 * 20 18 16 22 22 H 1.48498 * 109.47141 * 210.00318 * 20 18 16 23 23 H 1.48504 * 109.47236 * 330.00397 * 20 18 16 24 24 H 1.09005 * 109.46988 * 270.27392 * 1 2 3 25 25 H 1.08997 * 109.47313 * 30.28022 * 1 2 3 26 26 H 1.09002 * 109.47286 * 150.27466 * 1 2 3 27 27 H 1.07990 * 120.07818 * 359.97438 * 3 2 1 28 28 H 1.07994 * 120.07286 * 180.29644 * 7 4 3 29 29 H 1.08001 * 119.91632 * 180.02562 * 8 7 4 30 30 H 1.09004 * 109.46716 * 300.01979 * 10 9 2 31 31 H 1.09000 * 109.47309 * 60.01902 * 10 9 2 32 32 H 1.08997 * 109.47036 * 300.00147 * 14 12 11 33 33 H 1.08998 * 109.46923 * 59.99786 * 14 12 11 34 34 H 1.09003 * 109.47335 * 300.00467 * 15 14 12 35 35 H 1.08998 * 109.47405 * 60.00141 * 15 14 12 36 36 H 0.97003 * 120.00038 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.1958 0.0000 4 6 3.5914 1.1938 -0.0049 5 6 4.3123 2.4311 -0.0105 6 7 4.8842 3.4126 -0.0149 7 6 4.2816 -0.0202 0.0014 8 6 3.5808 -1.2082 0.0067 9 6 2.1971 -1.1990 0.0057 10 6 1.4384 -2.5010 0.0114 11 8 2.3776 -3.6084 0.0174 12 6 1.8596 -4.8468 0.0235 13 8 0.6611 -5.0003 0.0242 14 6 2.7728 -6.0455 0.0294 15 6 1.9344 -7.3253 0.0363 16 6 2.8477 -8.5241 0.0416 17 1 3.9189 -8.3868 0.0406 18 6 2.3156 -9.7960 0.0488 19 7 1.0111 -9.9631 0.0506 20 14 3.4475 -11.2819 0.0561 21 1 3.7483 -11.6682 1.4581 22 1 2.7826 -12.4142 -0.6375 23 1 4.7116 -10.9447 -0.6466 24 1 -0.3633 0.0049 1.0277 25 1 -0.3634 0.8874 -0.5182 26 1 -0.3634 -0.8924 -0.5096 27 1 1.6553 2.1310 -0.0004 28 1 5.3615 -0.0287 0.0024 29 1 4.1135 -2.1477 0.0120 30 1 0.8109 -2.5520 0.9013 31 1 0.8121 -2.5606 -0.8787 32 1 3.4017 -6.0275 -0.8606 33 1 3.4017 -6.0188 0.9193 34 1 1.3057 -7.3430 0.9266 35 1 1.3052 -7.3523 -0.8533 36 1 0.6367 -10.8580 0.0552 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:24 Heat of formation + Delta-G solvation = -69.430144 kcal Electronic energy + Delta-G solvation = -19103.017862 eV Core-core repulsion = 15937.011760 eV Total energy + Delta-G solvation = -3166.006102 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.59581 -40.60266 -37.95492 -37.36120 -35.61103 -34.23015 -33.21760 -32.77079 -29.00248 -27.90342 -27.40743 -24.42933 -23.12141 -22.89541 -21.31890 -19.25912 -19.04014 -18.17193 -17.68692 -17.49727 -16.58295 -16.41459 -15.91933 -15.69418 -15.27001 -15.07559 -14.44254 -14.42628 -14.22092 -14.09861 -14.04370 -13.81740 -13.64224 -13.13921 -13.11525 -12.82135 -12.73377 -12.49221 -12.22377 -11.97303 -11.96410 -11.83482 -11.71308 -11.39880 -11.23026 -10.54867 -9.86008 -9.65066 -8.17508 -6.30574 -0.30740 0.35217 1.28831 1.45637 1.47514 1.57265 1.58291 1.68546 1.85012 2.45350 2.80028 2.81518 3.16720 3.55003 3.83463 3.87197 4.02484 4.16547 4.25462 4.27466 4.44094 4.52013 4.55046 4.65364 4.81078 4.85348 4.94180 5.00087 5.17828 5.27970 5.29575 5.45967 5.51034 5.57166 5.60323 5.81457 5.84431 6.16633 6.40189 6.82831 6.90464 7.39665 8.94982 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.036431 B = 0.002831 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.385179 B = 9886.436813 C =10623.769697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.078 4.078 3 C -0.062 4.062 4 C -0.036 4.036 5 C 0.282 3.718 6 N -0.464 5.464 7 C -0.068 4.068 8 C -0.104 4.104 9 C -0.066 4.066 10 C 0.097 3.903 11 O -0.350 6.350 12 C 0.469 3.531 13 O -0.542 6.542 14 C -0.095 4.095 15 C 0.037 3.963 16 C -0.542 4.542 17 H 0.078 0.922 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.971 3.029 21 H -0.273 1.273 22 H -0.288 1.288 23 H -0.256 1.256 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.156 0.844 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.117 0.883 34 H -0.010 1.010 35 H -0.010 1.010 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.286 21.143 -0.074 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.078 4.078 3 C -0.082 4.082 4 C -0.039 4.039 5 C -0.032 4.032 6 N -0.140 5.140 7 C -0.088 4.088 8 C -0.121 4.121 9 C -0.067 4.067 10 C 0.024 3.976 11 O -0.267 6.267 12 C 0.315 3.685 13 O -0.432 6.432 14 C -0.132 4.132 15 C 0.000 4.000 16 C -0.580 4.580 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.796 3.204 21 H -0.198 1.198 22 H -0.213 1.213 23 H -0.180 1.180 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.086 0.914 27 H 0.174 0.826 28 H 0.169 0.831 29 H 0.164 0.836 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.009 0.991 35 H 0.009 0.991 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.679 22.548 -0.086 22.847 hybrid contribution -0.332 -1.318 0.019 1.359 sum 3.347 21.231 -0.066 21.493 Atomic orbital electron populations 1.20973 0.89003 1.04292 1.03874 1.19647 0.97434 0.90888 0.99828 1.21166 0.91387 0.98880 0.96764 1.16057 0.92611 0.86422 1.08851 1.25843 0.92508 0.92591 0.92298 1.81287 1.09824 1.12245 1.10677 1.21336 1.01266 0.89869 0.96361 1.21094 0.93228 0.99138 0.98685 1.19756 0.94620 0.92682 0.99672 1.21906 0.90428 0.81558 1.03741 1.86460 1.41126 1.14948 1.84205 1.24432 0.88851 0.84552 0.70701 1.90645 1.18782 1.86904 1.46833 1.21513 0.97635 0.87619 1.06406 1.18805 0.94521 0.91203 0.95497 1.21660 0.94107 0.91356 1.50852 0.90404 1.26072 0.96573 1.02913 0.94668 1.70152 1.12828 1.23195 1.51385 0.85350 0.78850 0.77765 0.78476 1.19813 1.21347 1.17966 0.89584 0.89087 0.91384 0.82605 0.83109 0.83555 0.89315 0.89275 0.86464 0.86457 0.99145 0.99137 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 9.59 71.24 0.68 -0.57 16 2 C -0.08 -1.04 5.87 -19.90 -0.12 -1.15 16 3 C -0.06 -0.73 9.41 22.54 0.21 -0.51 16 4 C -0.04 -0.50 5.73 -21.36 -0.12 -0.63 16 5 C 0.28 4.97 15.33 88.33 1.35 6.33 16 6 N -0.46 -10.60 18.54 19.00 0.35 -10.25 16 7 C -0.07 -0.92 9.76 22.54 0.22 -0.70 16 8 C -0.10 -1.66 9.36 22.23 0.21 -1.45 16 9 C -0.07 -1.13 5.89 -19.81 -0.12 -1.25 16 10 C 0.10 2.10 4.56 71.23 0.32 2.42 16 11 O -0.35 -9.45 8.67 -51.44 -0.45 -9.89 16 12 C 0.47 16.60 7.96 71.24 0.57 17.17 16 13 O -0.54 -23.29 15.73 21.95 0.35 -22.94 16 14 C -0.09 -3.50 5.75 29.85 0.17 -3.33 16 15 C 0.04 1.92 4.26 29.85 0.13 2.04 16 16 C -0.54 -29.27 9.11 25.60 0.23 -29.04 16 17 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 18 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 19 N -0.94 -57.05 13.29 21.45 0.28 -56.76 16 20 Si 0.97 42.74 29.54 68.60 2.03 44.77 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 24 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.09 0.59 8.08 -2.39 -0.02 0.58 16 26 H 0.07 0.79 6.62 -2.39 -0.02 0.77 16 27 H 0.16 1.14 8.06 -2.92 -0.02 1.12 16 28 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 29 H 0.15 2.37 6.97 -2.91 -0.02 2.35 16 30 H 0.09 1.91 8.13 -2.38 -0.02 1.89 16 31 H 0.09 1.91 7.47 -2.39 -0.02 1.89 16 32 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 33 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 34 H -0.01 -0.58 8.10 -2.39 -0.02 -0.60 16 35 H -0.01 -0.57 8.10 -2.39 -0.02 -0.59 16 36 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -70.69 325.19 7.86 -62.82 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: 1.09 Total: 2.71 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 4.21 Total: -10.46 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: 0.64 Total: -67.01 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.10 Total: -32.84 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -70.69 7.86 -62.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.606 kcal (2) G-P(sol) polarization free energy of solvation -70.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds