Wall clock time and date at job start Mon Mar 30 2020 01:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46932 * 189.68126 * 3 2 1 5 5 H 1.09000 * 109.46932 * 55.00130 * 4 3 2 6 6 C 1.52999 * 109.46985 * 175.00254 * 4 3 2 7 7 O 1.42897 * 109.47081 * 55.00159 * 6 4 3 8 8 N 1.46503 * 109.46982 * 295.00181 * 4 3 2 9 9 C 1.34777 * 119.99793 * 154.99988 * 8 4 3 10 10 O 1.21549 * 120.00092 * 0.02562 * 9 8 4 11 11 C 1.47884 * 120.00166 * 180.02562 * 9 8 4 12 12 C 1.39918 * 120.02096 * 359.72062 * 11 9 8 13 13 C 1.38340 * 120.35393 * 179.71776 * 12 11 9 14 14 C 1.37746 * 120.41381 * 0.56161 * 13 12 11 15 15 C 1.40753 * 120.03872 * 359.72158 * 14 13 12 16 16 C 1.41438 * 120.18099 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99460 * 334.93337 * 16 15 14 18 18 C 1.39937 * 120.00232 * 154.93200 * 16 15 14 19 19 N 1.30825 * 119.99892 * 342.58009 * 18 16 15 20 20 Si 1.86797 * 119.99796 * 162.57884 * 18 16 15 21 21 H 1.48497 * 109.47439 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47243 * 119.99931 * 20 18 16 23 23 H 1.48497 * 109.47439 * 239.99900 * 20 18 16 24 24 C 1.38989 * 120.02532 * 180.02562 * 11 9 8 25 25 H 4.44651 * 5.63382 * 180.02562 * 4 1 2 26 26 H 1.08997 * 109.47715 * 309.68632 * 3 2 1 27 27 H 1.09002 * 109.46969 * 69.68322 * 3 2 1 28 28 H 1.09008 * 109.46856 * 174.99932 * 6 4 3 29 29 H 1.08995 * 109.47445 * 295.00130 * 6 4 3 30 30 H 0.96707 * 113.99688 * 179.97438 * 7 6 4 31 31 H 0.96992 * 120.00388 * 335.00072 * 8 4 3 32 32 H 1.08002 * 119.82499 * 359.97438 * 12 11 9 33 33 H 1.08001 * 119.78899 * 180.26094 * 13 12 11 34 34 H 1.07993 * 119.98404 * 179.73776 * 14 13 12 35 35 H 0.96997 * 119.99952 * 179.97438 * 19 18 16 36 36 H 1.07997 * 120.20960 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4229 0.2426 5 1 2.7205 1.8124 1.1631 6 6 4.6801 1.4042 0.3668 7 8 5.2448 0.7866 -0.7915 8 7 2.7673 2.2789 -0.8813 9 6 2.6398 3.6087 -0.7028 10 8 2.8472 4.0978 0.3904 11 6 2.2476 4.4727 -1.8371 12 6 2.0144 3.9109 -3.0971 13 6 1.6415 4.7120 -4.1616 14 6 1.5066 6.0728 -3.9965 15 6 1.7428 6.6567 -2.7377 16 6 1.6047 8.0537 -2.5647 17 1 1.7211 8.7165 -3.4094 18 6 1.3173 8.5769 -1.2990 19 7 0.8447 7.7973 -0.3608 20 14 1.6085 10.3886 -0.9493 21 1 2.1443 11.0480 -2.1672 22 1 0.3265 11.0303 -0.5618 23 1 2.5867 10.5279 0.1593 24 6 2.1165 5.8442 -1.6537 25 1 -1.0503 -0.0005 0.0001 26 1 3.0097 -0.6554 0.7908 27 1 3.0095 -0.3560 -0.9638 28 1 5.0503 2.4261 0.4506 29 1 4.9655 0.8404 1.2548 30 1 6.2108 0.7406 -0.7812 31 1 2.6021 1.8886 -1.7537 32 1 2.1220 2.8456 -3.2385 33 1 1.4597 4.2681 -5.1292 34 1 1.2193 6.6922 -4.8332 35 1 0.6458 8.1599 0.5166 36 1 2.2999 6.2828 -0.6840 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816670240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:44 Heat of formation + Delta-G solvation = -22.127052 kcal Electronic energy + Delta-G solvation = -20190.944019 eV Core-core repulsion = 17026.989133 eV Total energy + Delta-G solvation = -3163.954886 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.48490 -37.57951 -36.66942 -35.10666 -33.73944 -32.88977 -30.80915 -29.49594 -29.26034 -26.66114 -25.28327 -23.08024 -21.11981 -20.69956 -19.59919 -18.35898 -17.63394 -17.36375 -16.20556 -15.71320 -15.13184 -14.96526 -14.70217 -14.32155 -13.78251 -13.55486 -13.39855 -13.34024 -12.96619 -12.60576 -12.46442 -11.85670 -11.70367 -11.55030 -11.15248 -11.05684 -10.71542 -10.47125 -10.28383 -10.15851 -9.98778 -9.92912 -9.65923 -9.20613 -8.98110 -8.63905 -7.60236 -7.49083 -6.77957 -4.39402 2.23559 2.82542 2.87777 2.91604 3.08899 3.13812 3.16343 3.67540 3.87156 3.93620 4.27889 4.38298 4.66519 4.93394 5.20181 5.30951 5.36618 5.53337 5.63111 5.71956 5.79327 6.05813 6.08992 6.14890 6.31909 6.74169 6.90036 7.01245 7.04748 7.23438 7.40828 7.56045 7.70010 7.73343 7.79456 7.95237 8.13636 8.22148 8.52991 8.82538 8.85754 8.98117 10.17008 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021220 B = 0.004648 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.186805 B = 6022.830853 C = 6242.691396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.189 4.189 3 C -0.013 4.013 4 C 0.155 3.845 5 H 0.101 0.899 6 C 0.063 3.937 7 O -0.568 6.568 8 N -0.722 5.722 9 C 0.566 3.434 10 O -0.551 6.551 11 C -0.128 4.128 12 C -0.214 4.214 13 C -0.099 4.099 14 C -0.211 4.211 15 C 0.098 3.902 16 C -0.461 4.461 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.785 5.785 20 Si 0.909 3.091 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.271 1.271 24 C -0.092 4.092 25 H 0.215 0.785 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.377 0.623 31 H 0.401 0.599 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.283 0.717 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.473 -12.152 1.406 13.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.189 4.189 3 C -0.050 4.050 4 C 0.049 3.951 5 H 0.119 0.881 6 C -0.016 4.016 7 O -0.374 6.374 8 N -0.375 5.375 9 C 0.357 3.643 10 O -0.430 6.430 11 C -0.131 4.131 12 C -0.234 4.234 13 C -0.117 4.117 14 C -0.231 4.231 15 C 0.096 3.904 16 C -0.490 4.490 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.409 5.409 20 Si 0.733 3.267 21 H -0.183 1.183 22 H -0.199 1.199 23 H -0.196 1.196 24 C -0.112 4.112 25 H 0.232 0.768 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.223 0.777 31 H 0.237 0.763 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.897 -11.843 2.291 12.677 hybrid contribution 0.297 0.600 -0.003 0.670 sum 4.194 -11.243 2.288 12.216 Atomic orbital electron populations 1.24885 0.95966 1.00238 1.00905 1.22964 0.94428 1.00845 1.00680 1.18902 0.84943 0.96690 1.04442 1.20901 0.92125 0.89532 0.92539 0.88146 1.22680 0.93992 0.97452 0.87442 1.86456 1.25161 1.82646 1.43091 1.45880 1.71735 1.07037 1.12846 1.18855 0.75298 0.81373 0.88789 1.90679 1.51197 1.74386 1.26693 1.19463 1.06983 0.94419 0.92207 1.20367 1.12814 0.97121 0.93110 1.20439 1.00471 0.94126 0.96661 1.21104 1.10016 0.93788 0.98174 1.17607 0.88649 0.93511 0.90667 1.19609 1.42611 0.92067 0.94722 0.90075 1.25957 0.92311 1.00581 0.95706 1.69802 1.29051 1.37753 1.04321 0.86244 0.78909 0.82016 0.79486 1.18345 1.19934 1.19597 1.21625 0.98509 0.90481 1.00580 0.76770 0.88571 0.88326 0.92427 0.92960 0.77659 0.76263 0.89214 0.88913 0.88627 0.90550 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.66 19.25 29.55 0.57 -2.09 16 2 C -0.19 -2.58 13.05 -37.12 -0.48 -3.06 16 3 C -0.01 -0.15 4.97 -29.52 -0.15 -0.30 16 4 C 0.15 2.20 2.34 -67.93 -0.16 2.04 16 5 H 0.10 1.59 7.58 -51.93 -0.39 1.19 16 6 C 0.06 0.77 6.85 37.16 0.25 1.02 16 7 O -0.57 -6.33 12.83 -35.23 -0.45 -6.78 16 8 N -0.72 -12.51 4.67 -54.73 -0.26 -12.77 16 9 C 0.57 12.61 7.74 -12.31 -0.10 12.52 16 10 O -0.55 -13.79 16.00 5.32 0.09 -13.70 16 11 C -0.13 -3.09 5.87 -105.04 -0.62 -3.70 16 12 C -0.21 -4.66 9.55 -38.92 -0.37 -5.03 16 13 C -0.10 -2.16 10.01 -39.72 -0.40 -2.56 16 14 C -0.21 -5.10 9.78 -38.81 -0.38 -5.48 16 15 C 0.10 2.63 5.57 -106.87 -0.59 2.04 16 16 C -0.46 -12.25 9.05 -37.73 -0.34 -12.60 16 17 H 0.08 2.05 7.90 -52.48 -0.41 1.63 16 18 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 19 N -0.78 -21.04 10.97 55.55 0.61 -20.43 16 20 Si 0.91 18.92 29.59 -169.99 -5.03 13.89 16 21 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 C -0.09 -2.49 8.23 -38.44 -0.32 -2.80 16 25 H 0.22 2.14 7.80 -54.08 -0.42 1.72 16 26 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.10 1.10 7.73 -51.93 -0.40 0.70 16 28 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.38 2.58 9.12 45.56 0.42 2.99 16 31 H 0.40 6.49 6.62 -40.82 -0.27 6.22 16 32 H 0.09 1.66 6.38 -52.49 -0.33 1.33 16 33 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 35 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 36 H 0.13 3.88 5.77 -52.49 -0.30 3.58 16 LS Contribution 320.51 15.07 4.83 4.83 Total: -1.00 -31.74 320.51 -6.75 -38.50 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -3.37 Total: 14.66 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -3.17 Total: -18.21 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.35 Total: -33.20 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.37 Total: -20.48 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.74 -6.75 -38.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816670240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.373 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds