Wall clock time and date at job start Mon Mar 30 2020 01:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46932 * 189.68126 * 3 2 1 5 5 H 1.09000 * 109.46932 * 55.00130 * 4 3 2 6 6 C 1.52999 * 109.46985 * 175.00254 * 4 3 2 7 7 O 1.42897 * 109.47081 * 55.00159 * 6 4 3 8 8 N 1.46503 * 109.46982 * 295.00181 * 4 3 2 9 9 C 1.34777 * 119.99793 * 154.99988 * 8 4 3 10 10 O 1.21549 * 120.00092 * 0.02562 * 9 8 4 11 11 C 1.47884 * 120.00166 * 180.02562 * 9 8 4 12 12 C 1.39918 * 120.02096 * 359.72062 * 11 9 8 13 13 C 1.38340 * 120.35393 * 179.71776 * 12 11 9 14 14 C 1.37746 * 120.41381 * 0.56161 * 13 12 11 15 15 C 1.40753 * 120.03872 * 359.72158 * 14 13 12 16 16 C 1.41438 * 120.18099 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99460 * 334.93337 * 16 15 14 18 18 C 1.39937 * 120.00232 * 154.93200 * 16 15 14 19 19 N 1.30825 * 119.99892 * 342.58009 * 18 16 15 20 20 Si 1.86797 * 119.99796 * 162.57884 * 18 16 15 21 21 H 1.48497 * 109.47439 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47243 * 119.99931 * 20 18 16 23 23 H 1.48497 * 109.47439 * 239.99900 * 20 18 16 24 24 C 1.38989 * 120.02532 * 180.02562 * 11 9 8 25 25 H 4.44651 * 5.63382 * 180.02562 * 4 1 2 26 26 H 1.08997 * 109.47715 * 309.68632 * 3 2 1 27 27 H 1.09002 * 109.46969 * 69.68322 * 3 2 1 28 28 H 1.09008 * 109.46856 * 174.99932 * 6 4 3 29 29 H 1.08995 * 109.47445 * 295.00130 * 6 4 3 30 30 H 0.96707 * 113.99688 * 179.97438 * 7 6 4 31 31 H 0.96992 * 120.00388 * 335.00072 * 8 4 3 32 32 H 1.08002 * 119.82499 * 359.97438 * 12 11 9 33 33 H 1.08001 * 119.78899 * 180.26094 * 13 12 11 34 34 H 1.07993 * 119.98404 * 179.73776 * 14 13 12 35 35 H 0.96997 * 119.99952 * 179.97438 * 19 18 16 36 36 H 1.07997 * 120.20960 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4229 0.2426 5 1 2.7205 1.8124 1.1631 6 6 4.6801 1.4042 0.3668 7 8 5.2448 0.7866 -0.7915 8 7 2.7673 2.2789 -0.8813 9 6 2.6398 3.6087 -0.7028 10 8 2.8472 4.0978 0.3904 11 6 2.2476 4.4727 -1.8371 12 6 2.0144 3.9109 -3.0971 13 6 1.6415 4.7120 -4.1616 14 6 1.5066 6.0728 -3.9965 15 6 1.7428 6.6567 -2.7377 16 6 1.6047 8.0537 -2.5647 17 1 1.7211 8.7165 -3.4094 18 6 1.3173 8.5769 -1.2990 19 7 0.8447 7.7973 -0.3608 20 14 1.6085 10.3886 -0.9493 21 1 2.1443 11.0480 -2.1672 22 1 0.3265 11.0303 -0.5618 23 1 2.5867 10.5279 0.1593 24 6 2.1165 5.8442 -1.6537 25 1 -1.0503 -0.0005 0.0001 26 1 3.0097 -0.6554 0.7908 27 1 3.0095 -0.3560 -0.9638 28 1 5.0503 2.4261 0.4506 29 1 4.9655 0.8404 1.2548 30 1 6.2108 0.7406 -0.7812 31 1 2.6021 1.8886 -1.7537 32 1 2.1220 2.8456 -3.2385 33 1 1.4597 4.2681 -5.1292 34 1 1.2193 6.6922 -4.8332 35 1 0.6458 8.1599 0.5166 36 1 2.2999 6.2828 -0.6840 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816670240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:44 Heat of formation + Delta-G solvation = -44.497407 kcal Electronic energy + Delta-G solvation = -20191.914070 eV Core-core repulsion = 17026.989133 eV Total energy + Delta-G solvation = -3164.924937 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.08557 -39.11710 -38.13792 -36.21059 -35.61159 -34.18438 -32.36368 -31.32218 -30.79304 -27.63671 -27.19120 -24.73083 -22.87044 -22.13715 -21.24493 -19.71225 -19.10180 -18.36790 -17.87180 -17.18254 -16.81845 -16.45248 -16.20328 -15.71876 -15.15631 -15.11826 -14.97464 -14.49534 -14.27572 -14.25906 -14.07105 -13.49459 -13.06963 -12.91615 -12.78624 -12.66174 -12.52579 -12.17988 -11.90234 -11.51221 -11.25952 -11.17652 -11.09073 -10.90399 -10.69185 -10.12894 -9.47749 -9.39552 -8.67114 -6.39174 0.37340 0.99368 1.36191 1.46075 1.52762 1.85213 1.90763 2.09643 2.19124 2.24003 2.78098 3.37063 3.45923 3.69145 3.88085 4.07411 4.16025 4.34197 4.41930 4.50925 4.57523 4.66999 4.76561 4.88501 5.01350 5.08238 5.16772 5.18295 5.30465 5.49367 5.53359 5.85666 5.91911 6.04167 6.27369 6.50154 6.66299 6.72685 6.87222 6.90207 6.93589 7.30533 8.30175 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021220 B = 0.004648 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.186805 B = 6022.830853 C = 6242.691396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.215 4.215 3 C -0.003 4.003 4 C 0.146 3.854 5 H 0.080 0.920 6 C 0.073 3.927 7 O -0.576 6.576 8 N -0.701 5.701 9 C 0.562 3.438 10 O -0.589 6.589 11 C -0.139 4.139 12 C -0.198 4.198 13 C -0.096 4.096 14 C -0.217 4.217 15 C 0.067 3.933 16 C -0.497 4.497 17 H 0.084 0.916 18 C 0.029 3.971 19 N -0.827 5.827 20 Si 0.984 3.016 21 H -0.251 1.251 22 H -0.264 1.264 23 H -0.270 1.270 24 C -0.129 4.129 25 H 0.236 0.764 26 H 0.128 0.872 27 H 0.110 0.890 28 H 0.027 0.973 29 H 0.089 0.911 30 H 0.397 0.603 31 H 0.409 0.591 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.109 0.891 35 H 0.286 0.714 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.960 -14.096 0.225 14.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.215 4.215 3 C -0.039 4.039 4 C 0.042 3.958 5 H 0.098 0.902 6 C -0.006 4.006 7 O -0.384 6.384 8 N -0.353 5.353 9 C 0.352 3.648 10 O -0.471 6.471 11 C -0.142 4.142 12 C -0.218 4.218 13 C -0.114 4.114 14 C -0.237 4.237 15 C 0.065 3.935 16 C -0.527 4.527 17 H 0.102 0.898 18 C -0.185 4.185 19 N -0.453 5.453 20 Si 0.804 3.196 21 H -0.174 1.174 22 H -0.188 1.188 23 H -0.195 1.195 24 C -0.150 4.150 25 H 0.253 0.747 26 H 0.145 0.855 27 H 0.128 0.872 28 H 0.045 0.955 29 H 0.107 0.893 30 H 0.247 0.753 31 H 0.247 0.753 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.404 -13.848 1.076 14.571 hybrid contribution 0.157 0.978 0.280 1.029 sum 4.561 -12.870 1.355 13.721 Atomic orbital electron populations 1.25643 0.97047 0.99676 1.00669 1.23574 0.95476 1.01367 1.01050 1.18945 0.83859 0.94957 1.06165 1.21167 0.93910 0.90330 0.90435 0.90170 1.22464 0.92178 0.96632 0.89319 1.86392 1.27194 1.82160 1.42644 1.45741 1.69862 1.05491 1.14203 1.18703 0.75473 0.82887 0.87739 1.90653 1.53126 1.75447 1.27880 1.19800 1.06410 0.93899 0.94132 1.20820 1.10046 0.99142 0.91750 1.20913 0.98719 0.93146 0.98583 1.21410 1.09407 0.95365 0.97477 1.17960 0.89535 0.94136 0.91860 1.19892 1.44513 0.92565 0.95707 0.89752 1.26870 0.91318 1.05300 0.95058 1.69900 1.30545 1.39957 1.04860 0.85135 0.79014 0.76073 0.79362 1.17384 1.18835 1.19509 1.21428 1.01768 0.92165 0.99637 0.74750 0.85462 0.87229 0.95452 0.89286 0.75283 0.75314 0.85217 0.84445 0.87246 0.90317 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.23 19.25 74.32 1.43 -3.80 16 2 C -0.21 -5.41 13.05 31.13 0.41 -5.01 16 3 C 0.00 -0.06 4.97 28.79 0.14 0.09 16 4 C 0.15 3.94 2.34 44.99 0.11 4.05 16 5 H 0.08 2.52 7.58 -2.39 -0.02 2.51 16 6 C 0.07 1.63 6.85 71.98 0.49 2.12 16 7 O -0.58 -11.07 12.83 -148.98 -1.91 -12.98 16 8 N -0.70 -23.50 4.67 -445.36 -2.08 -25.58 16 9 C 0.56 25.46 7.74 86.80 0.67 26.13 16 10 O -0.59 -30.88 16.00 -3.87 -0.06 -30.94 16 11 C -0.14 -6.82 5.87 -20.14 -0.12 -6.94 16 12 C -0.20 -8.17 9.55 22.70 0.22 -7.96 16 13 C -0.10 -3.93 10.01 22.18 0.22 -3.71 16 14 C -0.22 -10.37 9.78 22.77 0.22 -10.14 16 15 C 0.07 3.73 5.57 -21.32 -0.12 3.61 16 16 C -0.50 -27.49 9.05 23.47 0.21 -27.28 16 17 H 0.08 4.40 7.90 -2.91 -0.02 4.37 16 18 C 0.03 1.55 5.14 85.25 0.44 1.99 16 19 N -0.83 -46.83 10.97 21.82 0.24 -46.59 16 20 Si 0.98 40.03 29.59 68.60 2.03 42.06 16 21 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 C -0.13 -7.35 8.23 23.01 0.19 -7.16 16 25 H 0.24 4.27 7.80 -4.40 -0.03 4.24 16 26 H 0.13 1.83 8.14 -2.39 -0.02 1.82 16 27 H 0.11 2.04 7.73 -2.39 -0.02 2.02 16 28 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 30 H 0.40 4.19 9.12 -74.05 -0.68 3.52 16 31 H 0.41 12.18 6.62 -92.71 -0.61 11.56 16 32 H 0.13 4.27 6.38 -2.91 -0.02 4.25 16 33 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 34 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 35 H 0.29 14.88 8.30 -92.71 -0.77 14.11 16 36 H 0.10 6.22 5.77 -2.91 -0.02 6.21 16 Total: -1.00 -73.28 320.51 2.56 -70.72 By element: Atomic # 1 Polarization: 37.49 SS G_CDS: -0.17 Total: 37.32 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 4.51 Total: -34.01 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: -1.84 Total: -72.17 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -1.97 Total: -43.92 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -73.28 2.56 -70.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816670240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.224 kcal (2) G-P(sol) polarization free energy of solvation -73.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds