Wall clock time and date at job start Mon Mar 30 2020 01:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47306 * 281.38020 * 3 2 1 5 5 H 1.09006 * 109.47648 * 305.00274 * 4 3 2 6 6 C 1.53001 * 109.47471 * 185.00217 * 4 3 2 7 7 O 1.42895 * 109.46844 * 305.00300 * 6 4 3 8 8 N 1.46503 * 109.47112 * 64.99938 * 4 3 2 9 9 C 1.34776 * 120.00206 * 204.99635 * 8 4 3 10 10 O 1.21584 * 119.99995 * 0.02562 * 9 8 4 11 11 C 1.47645 * 119.99781 * 180.02562 * 9 8 4 12 12 C 1.40015 * 119.89622 * 180.02562 * 11 9 8 13 13 C 1.36312 * 120.10903 * 180.25483 * 12 11 9 14 14 C 1.40889 * 119.89023 * 359.51799 * 13 12 11 15 15 C 1.41106 * 120.10458 * 180.23341 * 14 13 12 16 16 H 1.08007 * 120.00193 * 204.78818 * 15 14 13 17 17 C 1.40223 * 120.00235 * 24.78377 * 15 14 13 18 18 N 1.30654 * 119.99604 * 17.73952 * 17 15 14 19 19 Si 1.86796 * 120.00554 * 197.73682 * 17 15 14 20 20 H 1.48507 * 109.46968 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47125 * 119.99967 * 19 17 15 22 22 H 1.48490 * 109.47417 * 240.00293 * 19 17 15 23 23 C 1.40894 * 119.79412 * 0.49663 * 14 13 12 24 24 C 1.36312 * 119.88940 * 359.73804 * 23 14 13 25 25 H 4.44650 * 5.63363 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47065 * 161.38651 * 3 2 1 27 27 H 1.08999 * 109.47236 * 41.38500 * 3 2 1 28 28 H 1.08997 * 109.46929 * 64.99980 * 6 4 3 29 29 H 1.09002 * 109.47169 * 185.00314 * 6 4 3 30 30 H 0.96701 * 113.99903 * 180.02562 * 7 6 4 31 31 H 0.97004 * 119.99715 * 25.00684 * 8 4 3 32 32 H 1.08001 * 119.94049 * 359.96968 * 12 11 9 33 33 H 1.08000 * 120.05443 * 179.71603 * 13 12 11 34 34 H 0.97000 * 119.99671 * 179.97438 * 18 17 15 35 35 H 1.07998 * 120.05459 * 179.70916 * 23 14 13 36 36 H 1.08002 * 119.94993 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.2837 1.4141 5 1 2.7212 0.4349 2.1088 6 6 4.6810 -0.1601 1.4407 7 8 5.2458 -1.0186 0.4478 8 7 2.7692 -1.6404 1.8092 9 6 2.6426 -1.9519 3.1143 10 8 2.8491 -1.1069 3.9638 11 6 2.2532 -3.3193 3.5125 12 6 2.1218 -3.6405 4.8689 13 6 1.7675 -4.9029 5.2415 14 6 1.5236 -5.8826 4.2588 15 6 1.1518 -7.1895 4.6393 16 1 1.3471 -8.0207 3.9779 17 6 0.5289 -7.4092 5.8762 18 7 -0.0183 -6.4116 6.5183 19 14 0.4812 -9.1281 6.6058 20 1 1.1668 -10.0742 5.6891 21 1 1.1706 -9.1268 7.9211 22 1 -0.9309 -9.5499 6.7875 23 6 1.6574 -5.5548 2.8951 24 6 2.0168 -4.2909 2.5324 25 1 -1.0500 -0.0002 0.0001 26 1 3.0089 0.9747 -0.3280 27 1 3.0097 -0.7702 -0.6794 28 1 4.9655 0.8715 1.2336 29 1 5.0518 -0.4489 2.4242 30 1 6.2116 -0.9918 0.4081 31 1 2.6043 -2.3144 1.1314 32 1 2.3059 -2.8879 5.6213 33 1 1.6709 -5.1509 6.2882 34 1 -0.4496 -6.5637 7.3738 35 1 1.4760 -6.3037 2.1384 36 1 2.1201 -4.0386 1.4873 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816670681.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:46 Heat of formation + Delta-G solvation = -25.888831 kcal Electronic energy + Delta-G solvation = -19932.733550 eV Core-core repulsion = 16768.615542 eV Total energy + Delta-G solvation = -3164.118009 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.39390 -37.60865 -36.70081 -35.07881 -33.86376 -32.87687 -30.68280 -29.83316 -29.12996 -26.68533 -25.79878 -22.47015 -21.31256 -20.51659 -19.66567 -18.31873 -17.55440 -17.32635 -16.73543 -15.81333 -15.31406 -14.93553 -14.57151 -13.98312 -13.81016 -13.49059 -13.41328 -13.33691 -12.92083 -12.68380 -12.20827 -11.90231 -11.79278 -11.57715 -11.34882 -11.21953 -10.92932 -10.61555 -10.27666 -10.14774 -10.01170 -9.92197 -9.51650 -9.31210 -8.94150 -8.58244 -7.66656 -7.53431 -6.99722 -4.57582 2.26387 2.88095 2.91395 2.92466 2.97194 3.02549 3.06426 3.76237 3.76826 3.88345 4.29080 4.38645 4.60833 4.95547 5.22020 5.32118 5.37622 5.57200 5.60981 5.74478 5.90905 6.04166 6.09481 6.21375 6.32354 6.82938 6.86600 6.99326 7.09849 7.13908 7.46974 7.57223 7.65428 7.70357 7.82331 7.91098 8.08512 8.29741 8.45996 8.65907 8.78545 9.10588 9.92285 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.003860 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.882082 B = 7251.552456 C = 7456.169359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.188 4.188 3 C -0.014 4.014 4 C 0.157 3.843 5 H 0.099 0.901 6 C 0.064 3.936 7 O -0.568 6.568 8 N -0.727 5.727 9 C 0.573 3.427 10 O -0.578 6.578 11 C -0.282 4.282 12 C -0.036 4.036 13 C -0.183 4.183 14 C 0.128 3.872 15 C -0.444 4.444 16 H 0.085 0.915 17 C 0.074 3.926 18 N -0.770 5.770 19 Si 0.913 3.087 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.272 1.272 23 C -0.235 4.235 24 C -0.047 4.047 25 H 0.215 0.785 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.376 0.624 31 H 0.399 0.601 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.286 0.714 35 H 0.097 0.903 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.752 7.346 -8.978 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.188 4.188 3 C -0.051 4.051 4 C 0.051 3.949 5 H 0.117 0.883 6 C -0.015 4.015 7 O -0.373 6.373 8 N -0.380 5.380 9 C 0.368 3.632 10 O -0.460 6.460 11 C -0.287 4.287 12 C -0.055 4.055 13 C -0.202 4.202 14 C 0.125 3.875 15 C -0.471 4.471 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.393 5.393 19 Si 0.736 3.264 20 H -0.181 1.181 21 H -0.194 1.194 22 H -0.197 1.197 23 C -0.255 4.255 24 C -0.066 4.066 25 H 0.232 0.768 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.223 0.777 31 H 0.234 0.766 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.120 7.877 -8.273 12.143 hybrid contribution 0.134 -0.858 0.155 0.883 sum 4.254 7.019 -8.118 11.543 Atomic orbital electron populations 1.24874 0.95958 1.00971 1.00360 1.22975 0.94432 1.00584 1.00775 1.18911 0.84920 1.03725 0.97498 1.20847 0.91989 0.86983 0.95106 0.88326 1.22686 0.94151 0.92814 0.91883 1.86460 1.25115 1.67382 1.58378 1.45843 1.72434 1.11558 1.08160 1.18606 0.74983 0.88571 0.81037 1.90621 1.53734 1.51033 1.50632 1.18905 1.22832 0.92398 0.94529 1.20473 0.95325 0.96037 0.93707 1.21006 1.06402 0.92981 0.99840 1.17788 0.85877 0.92963 0.90858 1.19863 1.31927 0.94278 1.01076 0.89735 1.26105 0.92762 0.99526 0.96354 1.69765 1.22591 1.33483 1.13467 0.86179 0.78976 0.81607 0.79618 1.18084 1.19376 1.19689 1.20667 1.13150 0.95906 0.95753 1.20371 0.96645 0.93650 0.95950 0.76794 0.88665 0.88358 0.93125 0.92489 0.77717 0.76567 0.88242 0.86195 0.90252 0.88523 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.66 19.25 29.55 0.57 -2.09 16 2 C -0.19 -2.55 13.06 -37.12 -0.48 -3.03 16 3 C -0.01 -0.16 4.97 -29.52 -0.15 -0.30 16 4 C 0.16 2.21 2.34 -67.93 -0.16 2.05 16 5 H 0.10 1.53 7.57 -51.93 -0.39 1.14 16 6 C 0.06 0.77 6.85 37.16 0.25 1.02 16 7 O -0.57 -6.36 12.83 -35.23 -0.45 -6.81 16 8 N -0.73 -12.51 4.67 -54.81 -0.26 -12.77 16 9 C 0.57 12.41 7.73 -12.42 -0.10 12.32 16 10 O -0.58 -13.85 15.98 5.29 0.08 -13.77 16 11 C -0.28 -6.61 5.89 -104.72 -0.62 -7.23 16 12 C -0.04 -0.90 9.52 -39.61 -0.38 -1.28 16 13 C -0.18 -4.75 8.63 -39.27 -0.34 -5.09 16 14 C 0.13 3.32 5.57 -106.80 -0.60 2.73 16 15 C -0.44 -11.18 9.04 -37.75 -0.34 -11.52 16 16 H 0.08 2.02 7.91 -52.48 -0.42 1.61 16 17 C 0.07 1.76 5.14 -17.31 -0.09 1.67 16 18 N -0.77 -19.05 10.96 55.56 0.61 -18.44 16 19 Si 0.91 17.55 29.60 -169.99 -5.03 12.52 16 20 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 21 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 C -0.24 -5.57 9.73 -39.27 -0.38 -5.95 16 24 C -0.05 -1.04 9.47 -39.61 -0.38 -1.41 16 25 H 0.22 2.12 7.80 -54.09 -0.42 1.69 16 26 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.10 1.11 7.73 -51.93 -0.40 0.71 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.38 2.59 9.12 45.56 0.42 3.01 16 31 H 0.40 6.47 6.60 -40.82 -0.27 6.20 16 32 H 0.10 2.44 7.63 -52.49 -0.40 2.04 16 33 H 0.12 3.18 6.16 -52.49 -0.32 2.85 16 34 H 0.29 6.36 8.29 -40.82 -0.34 6.02 16 35 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.09 1.66 6.37 -52.49 -0.33 1.33 16 LS Contribution 320.23 15.07 4.83 4.83 Total: -1.00 -30.58 320.23 -6.77 -37.35 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -3.37 Total: 15.23 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -3.18 Total: -18.14 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 0.35 Total: -31.21 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.37 Total: -20.58 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.58 -6.77 -37.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816670681.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.459 kcal (2) G-P(sol) polarization free energy of solvation -30.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds