Wall clock time and date at job start Mon Mar 30 2020 01:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46889 * 210.27963 * 3 2 1 5 5 H 1.08991 * 109.47240 * 54.99996 * 4 3 2 6 6 C 1.53000 * 109.47066 * 175.00194 * 4 3 2 7 7 O 1.42904 * 109.47089 * 54.99983 * 6 4 3 8 8 N 1.46504 * 109.47071 * 295.00269 * 4 3 2 9 9 C 1.34775 * 119.99792 * 155.00129 * 8 4 3 10 10 O 1.21579 * 120.00057 * 359.97438 * 9 8 4 11 11 C 1.47642 * 119.99552 * 179.97438 * 9 8 4 12 12 C 1.40011 * 119.89387 * 179.97438 * 11 9 8 13 13 C 1.36319 * 120.11254 * 179.74664 * 12 11 9 14 14 C 1.40889 * 119.88721 * 0.25206 * 13 12 11 15 15 C 1.41113 * 120.10619 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00340 * 204.64066 * 15 14 13 17 17 C 1.40225 * 119.99501 * 24.64295 * 15 14 13 18 18 N 1.30650 * 120.00211 * 17.87474 * 17 15 14 19 19 Si 1.86794 * 120.00050 * 197.87472 * 17 15 14 20 20 H 1.48504 * 109.47040 * 89.99629 * 19 17 15 21 21 H 1.48498 * 109.47531 * 210.00170 * 19 17 15 22 22 H 1.48505 * 109.47310 * 330.00337 * 19 17 15 23 23 C 1.40889 * 119.79488 * 0.02562 * 14 13 12 24 24 C 1.36320 * 119.88880 * 0.02562 * 23 14 13 25 25 H 4.44645 * 5.63404 * 179.97438 * 4 1 2 26 26 H 1.09007 * 109.47091 * 90.28176 * 3 2 1 27 27 H 1.08994 * 109.47862 * 330.27874 * 3 2 1 28 28 H 1.08998 * 109.47114 * 175.00122 * 6 4 3 29 29 H 1.09000 * 109.47490 * 294.99912 * 6 4 3 30 30 H 0.96702 * 114.00003 * 179.97438 * 7 6 4 31 31 H 0.97004 * 119.99832 * 334.99555 * 8 4 3 32 32 H 1.08004 * 119.94932 * 0.02562 * 12 11 9 33 33 H 1.07992 * 120.06012 * 180.27807 * 13 12 11 34 34 H 0.97002 * 120.00128 * 179.97438 * 18 17 15 35 35 H 1.07999 * 120.05749 * 180.02562 * 23 14 13 36 36 H 1.08002 * 119.94398 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1553 1.2466 0.7274 5 1 2.7207 1.2875 1.7260 6 6 4.6802 1.1856 0.8368 7 8 5.2447 1.0149 -0.4648 8 7 2.7671 2.4433 -0.0234 9 6 2.6397 3.6253 0.6115 10 8 2.8465 3.6984 1.8073 11 6 2.2491 4.8313 -0.1453 12 6 2.1168 6.0580 0.5166 13 6 1.7614 7.1754 -0.1787 14 6 1.5218 7.0933 -1.5646 15 6 1.1541 8.2471 -2.2890 16 1 0.5987 8.1522 -3.2103 17 6 1.5100 9.5170 -1.8125 18 7 2.4554 9.6381 -0.9189 19 14 0.6326 11.0355 -2.4553 20 1 -0.5505 11.3210 -1.6043 21 1 1.5594 12.1952 -2.4198 22 1 0.1909 10.7976 -3.8531 23 6 1.6504 5.8555 -2.2252 24 6 2.0053 4.7434 -1.5212 25 1 -1.0502 -0.0002 -0.0004 26 1 3.0093 0.0059 -1.0277 27 1 3.0098 -0.8916 0.5094 28 1 5.0504 2.1125 1.2748 29 1 4.9657 0.3453 1.4697 30 1 6.2106 0.9682 -0.4716 31 1 2.6018 2.3849 -0.9775 32 1 2.3011 6.1201 1.5789 33 1 1.6640 8.1220 0.3318 34 1 2.7019 10.5166 -0.5895 35 1 1.4681 5.7878 -3.2875 36 1 2.1045 3.7942 -2.0267 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816670682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:47 Heat of formation + Delta-G solvation = -46.532174 kcal Electronic energy + Delta-G solvation = -19933.728872 eV Core-core repulsion = 16768.715701 eV Total energy + Delta-G solvation = -3165.013171 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.96247 -39.18326 -38.10611 -36.15877 -35.69350 -34.12960 -32.22130 -31.61029 -30.72419 -27.81175 -27.43098 -24.11067 -22.99794 -22.05769 -21.26539 -19.40861 -19.34108 -18.37575 -18.25769 -17.17433 -16.99992 -16.15231 -15.88202 -15.73793 -15.13983 -15.09154 -14.91040 -14.44083 -14.24736 -14.10521 -14.00993 -13.61630 -13.26025 -12.93944 -12.84521 -12.64864 -12.57842 -12.35237 -11.76900 -11.36948 -11.23509 -11.15361 -11.13215 -10.87889 -10.63041 -10.03958 -9.57775 -9.41726 -8.79300 -6.48842 0.44152 1.14322 1.37871 1.43370 1.53343 1.87526 1.93052 2.12100 2.17446 2.37690 2.78806 3.40290 3.48034 3.69256 3.93885 4.19627 4.26741 4.30725 4.39667 4.41577 4.54343 4.69098 4.80177 4.95957 5.00683 5.04256 5.18685 5.21046 5.25587 5.57556 5.62131 5.78332 5.95690 6.01186 6.19811 6.55233 6.69441 6.76091 6.76226 6.88847 6.91170 7.45104 8.15990 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029186 B = 0.003882 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.121817 B = 7211.320711 C = 7519.959294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.214 4.214 3 C -0.004 4.004 4 C 0.149 3.851 5 H 0.083 0.917 6 C 0.072 3.928 7 O -0.578 6.578 8 N -0.711 5.711 9 C 0.572 3.428 10 O -0.607 6.607 11 C -0.294 4.294 12 C -0.049 4.049 13 C -0.202 4.202 14 C 0.101 3.899 15 C -0.473 4.473 16 H 0.092 0.908 17 C 0.034 3.966 18 N -0.803 5.803 19 Si 0.990 3.010 20 H -0.262 1.262 21 H -0.266 1.266 22 H -0.251 1.251 23 C -0.246 4.246 24 C -0.037 4.037 25 H 0.237 0.763 26 H 0.106 0.894 27 H 0.126 0.874 28 H 0.028 0.972 29 H 0.088 0.912 30 H 0.396 0.604 31 H 0.405 0.595 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.295 0.705 35 H 0.115 0.885 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.678 -13.522 -1.231 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.214 4.214 3 C -0.041 4.041 4 C 0.044 3.956 5 H 0.101 0.899 6 C -0.007 4.007 7 O -0.386 6.386 8 N -0.362 5.362 9 C 0.366 3.634 10 O -0.492 6.492 11 C -0.298 4.298 12 C -0.069 4.069 13 C -0.222 4.222 14 C 0.098 3.902 15 C -0.500 4.500 16 H 0.110 0.890 17 C -0.184 4.184 18 N -0.427 5.427 19 Si 0.809 3.191 20 H -0.186 1.186 21 H -0.191 1.191 22 H -0.175 1.175 23 C -0.266 4.266 24 C -0.056 4.056 25 H 0.254 0.746 26 H 0.124 0.876 27 H 0.144 0.856 28 H 0.046 0.954 29 H 0.106 0.894 30 H 0.246 0.754 31 H 0.242 0.758 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.107 0.893 35 H 0.133 0.867 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.376 -13.340 -0.443 13.418 hybrid contribution 0.143 0.967 -0.097 0.982 sum 1.519 -12.373 -0.540 12.477 Atomic orbital electron populations 1.25634 0.97009 0.99957 1.00385 1.23552 0.95438 1.01244 1.01178 1.18939 0.83992 0.97618 1.03538 1.21102 0.93633 0.84291 0.96540 0.89943 1.22501 0.92497 1.00353 0.85365 1.86401 1.27127 1.96461 1.28591 1.45722 1.70751 1.07237 1.12513 1.18382 0.75073 0.83788 0.86155 1.90599 1.55179 1.86682 1.16763 1.19199 1.22374 0.93289 0.94950 1.20545 0.95957 0.92494 0.97902 1.20939 1.09380 0.97153 0.94712 1.18142 0.86679 0.93460 0.91940 1.20159 1.30594 0.91006 1.08209 0.89016 1.27022 0.93453 1.04328 0.93643 1.69804 1.21427 1.28261 1.23207 0.85077 0.78637 0.75286 0.80054 1.18643 1.19076 1.17453 1.20928 1.13002 0.93551 0.99090 1.20655 0.94986 0.97767 0.92194 0.74646 0.87623 0.85617 0.95402 0.89426 0.75390 0.75800 0.89013 0.87731 0.89341 0.86727 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.01 19.25 74.32 1.43 -3.58 16 2 C -0.21 -5.27 13.05 31.13 0.41 -4.86 16 3 C 0.00 -0.09 4.97 28.79 0.14 0.06 16 4 C 0.15 3.94 2.34 44.99 0.11 4.04 16 5 H 0.08 2.48 7.57 -2.39 -0.02 2.46 16 6 C 0.07 1.60 6.85 71.98 0.49 2.09 16 7 O -0.58 -11.57 12.83 -148.98 -1.91 -13.48 16 8 N -0.71 -23.51 4.67 -445.60 -2.08 -25.59 16 9 C 0.57 24.78 7.73 86.73 0.67 25.45 16 10 O -0.61 -29.63 15.98 -3.97 -0.06 -29.69 16 11 C -0.29 -13.87 5.89 -19.93 -0.12 -13.99 16 12 C -0.05 -2.57 9.52 22.25 0.21 -2.36 16 13 C -0.20 -10.96 8.64 22.47 0.19 -10.77 16 14 C 0.10 5.33 5.58 -21.28 -0.12 5.22 16 15 C -0.47 -24.08 9.04 23.46 0.21 -23.87 16 16 H 0.09 4.38 7.91 -2.91 -0.02 4.35 16 17 C 0.03 1.63 5.14 85.35 0.44 2.07 16 18 N -0.80 -40.58 10.95 21.87 0.24 -40.34 16 19 Si 0.99 35.67 29.60 68.60 2.03 37.70 16 20 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 21 H -0.27 -9.13 7.11 99.48 0.71 -8.43 16 22 H -0.25 -8.65 7.11 99.48 0.71 -7.95 16 23 C -0.25 -11.58 9.73 22.47 0.22 -11.36 16 24 C -0.04 -1.61 9.47 22.25 0.21 -1.39 16 25 H 0.24 3.99 7.80 -4.41 -0.03 3.96 16 26 H 0.11 2.04 7.73 -2.38 -0.02 2.02 16 27 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.40 4.54 9.12 -74.06 -0.68 3.86 16 31 H 0.41 12.24 6.60 -92.71 -0.61 11.63 16 32 H 0.09 4.77 7.63 -2.91 -0.02 4.75 16 33 H 0.10 5.86 6.15 -2.91 -0.02 5.84 16 34 H 0.30 13.36 8.29 -92.71 -0.77 12.59 16 35 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 36 H 0.13 4.40 6.37 -2.91 -0.02 4.38 16 Total: -1.00 -67.59 320.22 2.54 -65.04 By element: Atomic # 1 Polarization: 39.79 SS G_CDS: -0.17 Total: 39.62 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 4.50 Total: -33.26 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -1.84 Total: -65.93 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -1.97 Total: -43.17 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Total: -67.59 2.54 -65.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816670682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.513 kcal (2) G-P(sol) polarization free energy of solvation -67.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds