Wall clock time and date at job start Mon Mar 30 2020 01:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30697 * 1 3 3 C 1.30696 * 179.97438 * 2 1 4 4 C 1.50703 * 119.99953 * 161.35588 * 3 2 1 5 5 N 1.46495 * 109.47317 * 124.99827 * 4 3 2 6 6 C 1.34775 * 120.00172 * 179.97438 * 5 4 3 7 7 O 1.21287 * 119.99798 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00246 * 179.97438 * 6 5 4 9 9 C 1.50695 * 109.46992 * 180.02562 * 8 6 5 10 10 C 1.38299 * 119.93247 * 90.00201 * 9 8 6 11 11 C 1.38101 * 120.07425 * 179.97438 * 10 9 8 12 12 C 1.38886 * 119.92536 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06440 * 180.02562 * 12 11 10 14 14 C 1.34828 * 117.00075 * 5.53777 * 13 12 11 15 15 H 1.07993 * 120.00518 * 354.94289 * 14 13 12 16 16 C 1.38663 * 119.99751 * 174.94575 * 14 13 12 17 17 N 1.31556 * 120.00220 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47264 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47375 * 119.99795 * 18 16 14 21 21 H 1.48506 * 109.47301 * 239.99793 * 18 16 14 22 22 C 1.38874 * 119.86623 * 0.27854 * 12 11 10 23 23 C 1.38106 * 119.92542 * 359.44577 * 22 12 11 24 24 H 1.07999 * 120.00212 * 108.64911 * 1 2 3 25 25 H 1.08000 * 120.00098 * 288.64745 * 1 2 3 26 26 H 1.08001 * 120.00349 * 341.35047 * 3 2 1 27 27 H 1.08998 * 109.47278 * 4.99366 * 4 3 2 28 28 H 1.09005 * 109.46966 * 244.99567 * 4 3 2 29 29 H 0.97005 * 120.00223 * 0.02562 * 5 4 3 30 30 H 1.08998 * 109.46621 * 60.00483 * 8 6 5 31 31 H 1.08996 * 109.47266 * 300.00146 * 8 6 5 32 32 H 1.07999 * 119.96503 * 0.02562 * 10 9 8 33 33 H 1.07992 * 120.03608 * 180.02562 * 11 10 9 34 34 H 0.96996 * 120.00178 * 179.97438 * 17 16 14 35 35 H 1.07996 * 120.03745 * 179.72497 * 22 12 11 36 36 H 1.07997 * 119.96326 * 180.27708 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 6 2.6139 0.0006 0.0000 4 6 3.3669 1.2376 -0.4172 5 7 4.2969 1.6251 0.6462 6 6 5.0817 2.7101 0.4929 7 8 5.0175 3.3658 -0.5254 8 6 6.0380 3.1091 1.5871 9 6 6.7910 4.3460 1.1697 10 6 6.2850 5.5970 1.4726 11 6 6.9729 6.7324 1.0920 12 6 8.1737 6.6169 0.4039 13 8 8.8525 7.7311 0.0288 14 6 8.3676 8.9153 0.4536 15 1 7.4335 8.9538 0.9943 16 6 9.0683 10.0839 0.1963 17 7 10.2064 10.0371 -0.4618 18 14 8.3968 11.7244 0.7855 19 1 7.1111 11.5067 1.4960 20 1 9.3728 12.3557 1.7096 21 1 8.1723 12.6152 -0.3813 22 6 8.6761 5.3594 0.0957 23 6 7.9863 4.2278 0.4841 24 1 -0.5400 -0.2991 -0.8862 25 1 -0.5400 0.2991 0.8862 26 1 3.1544 -0.8853 0.2991 27 1 2.6616 2.0490 -0.5967 28 1 3.9248 1.0324 -1.3309 29 1 4.3485 1.1005 1.4605 30 1 6.7430 2.2976 1.7671 31 1 5.4798 3.3149 2.5004 32 1 5.3513 5.6861 2.0080 33 1 6.5774 7.7089 1.3291 34 1 10.6963 10.8546 -0.6422 35 1 9.6074 5.2665 -0.4432 36 1 8.3786 3.2496 0.2487 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816701495.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:03 Heat of formation + Delta-G solvation = 6.473079 kcal Electronic energy + Delta-G solvation = -19102.182139 eV Core-core repulsion = 15939.467448 eV Total energy + Delta-G solvation = -3162.714691 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.77078 -38.74670 -36.59399 -35.81607 -33.58213 -32.42166 -31.40161 -30.09254 -29.55519 -26.69979 -25.20251 -24.08649 -21.91101 -21.07542 -20.13240 -18.29996 -17.92182 -16.97745 -16.75574 -16.18880 -15.59241 -14.87885 -14.64328 -14.50221 -14.19852 -14.16663 -13.79886 -13.43754 -13.39359 -13.20524 -12.80603 -12.63841 -12.32372 -11.78288 -11.44767 -11.23231 -10.81066 -10.70734 -10.55240 -10.37897 -9.94842 -9.74316 -9.44180 -9.26693 -9.06332 -8.77581 -8.08606 -7.10267 -6.40017 -3.98330 1.46572 1.62216 2.31319 2.33852 2.80611 3.15103 3.17039 3.22795 3.37420 4.01165 4.46762 4.60249 4.86384 4.98798 5.13131 5.16462 5.27209 5.33602 5.37459 5.46975 5.55705 5.63568 5.71657 5.79361 5.88318 5.91527 6.27914 6.32341 6.48212 6.76621 6.81837 6.97837 7.11553 7.30081 7.43311 7.47813 7.51719 7.90419 8.05662 8.34852 9.05888 9.77220 10.78311 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034478 B = 0.002903 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.912122 B = 9642.412759 C =10088.324963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.179 4.179 3 C -0.128 4.128 4 C 0.162 3.838 5 N -0.739 5.739 6 C 0.508 3.492 7 O -0.520 6.520 8 C -0.079 4.079 9 C -0.170 4.170 10 C -0.057 4.057 11 C -0.232 4.232 12 C 0.156 3.844 13 O -0.179 6.179 14 C -0.390 4.390 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.192 4.192 23 C -0.059 4.059 24 H 0.126 0.874 25 H 0.127 0.873 26 H 0.137 0.863 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.399 0.601 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.126 0.874 34 H 0.269 0.731 35 H 0.116 0.884 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.946 -18.622 5.189 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.180 4.180 3 C -0.146 4.146 4 C 0.038 3.962 5 N -0.393 5.393 6 C 0.295 3.705 7 O -0.394 6.394 8 C -0.119 4.119 9 C -0.172 4.172 10 C -0.075 4.075 11 C -0.252 4.252 12 C 0.103 3.897 13 O -0.082 6.082 14 C -0.466 4.466 15 H 0.110 0.890 16 C -0.166 4.166 17 N -0.499 5.499 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.211 4.211 23 C -0.078 4.078 24 H 0.143 0.857 25 H 0.144 0.856 26 H 0.155 0.845 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.233 0.767 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.144 0.856 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.597 -17.899 4.198 22.867 hybrid contribution -0.486 0.458 0.645 0.928 sum -14.084 -17.441 4.842 22.934 Atomic orbital electron populations 1.22178 0.90807 1.01440 1.02668 1.23558 0.94728 1.00489 0.99202 1.21069 0.90367 0.99310 1.03836 1.20103 0.91461 0.93589 0.91003 1.46107 1.41735 1.30516 1.20990 1.21110 0.80740 0.79463 0.89196 1.90754 1.67064 1.51857 1.29704 1.20401 0.96945 0.97889 0.96639 1.18639 0.97656 0.92567 1.08301 1.20508 0.97464 0.91776 0.97750 1.21106 0.97816 0.98911 1.07334 1.19391 0.90670 0.88154 0.91498 1.83976 1.48382 1.11919 1.63961 1.21378 1.07109 0.81240 1.36892 0.89042 1.25291 0.95548 0.99028 0.96756 1.70050 1.13693 1.28793 1.37352 0.85644 0.78776 0.80454 0.78527 1.19123 1.20181 1.20184 1.20154 1.02461 0.90020 1.08462 1.20401 0.94122 0.96848 0.96413 0.85674 0.85577 0.84535 0.91185 0.90317 0.76689 0.88906 0.88992 0.87848 0.85594 0.92135 0.86545 0.87367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 14.70 29.10 0.43 -0.41 16 2 C -0.18 -1.43 13.46 -42.85 -0.58 -2.01 16 3 C -0.13 -0.97 9.62 -35.94 -0.35 -1.32 16 4 C 0.16 1.60 6.11 -5.19 -0.03 1.57 16 5 N -0.74 -7.33 5.55 -61.47 -0.34 -7.67 16 6 C 0.51 7.12 7.82 -10.98 -0.09 7.03 16 7 O -0.52 -10.01 16.03 5.55 0.09 -9.92 16 8 C -0.08 -0.99 5.83 -29.04 -0.17 -1.16 16 9 C -0.17 -3.03 4.38 -104.58 -0.46 -3.49 16 10 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 11 C -0.23 -5.33 9.17 -39.39 -0.36 -5.69 16 12 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 13 O -0.18 -5.29 9.76 0.05 0.00 -5.28 16 14 C -0.39 -11.22 9.49 30.89 0.29 -10.92 16 15 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 16 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 17 N -0.86 -25.87 13.67 55.48 0.76 -25.11 16 18 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 C -0.19 -4.28 9.99 -39.39 -0.39 -4.67 16 23 C -0.06 -1.12 9.69 -39.61 -0.38 -1.51 16 24 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 25 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 26 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 27 H 0.07 0.80 7.94 -51.93 -0.41 0.39 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.40 2.63 8.46 -40.82 -0.35 2.28 16 30 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 36 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 326.18 15.07 4.92 4.92 Total: -1.00 -35.15 326.18 -6.69 -41.84 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.26 Total: 4.63 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -2.82 Total: -19.39 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.42 Total: -32.78 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.09 Total: -15.21 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.15 -6.69 -41.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816701495.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.315 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds