Wall clock time and date at job start Mon Mar 30 2020 01:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30697 * 1 3 3 C 1.30696 * 179.97438 * 2 1 4 4 C 1.50703 * 119.99953 * 161.35588 * 3 2 1 5 5 N 1.46495 * 109.47317 * 124.99827 * 4 3 2 6 6 C 1.34775 * 120.00172 * 179.97438 * 5 4 3 7 7 O 1.21287 * 119.99798 * 0.02562 * 6 5 4 8 8 C 1.50705 * 120.00246 * 179.97438 * 6 5 4 9 9 C 1.50695 * 109.46992 * 180.02562 * 8 6 5 10 10 C 1.38299 * 119.93247 * 90.00201 * 9 8 6 11 11 C 1.38101 * 120.07425 * 179.97438 * 10 9 8 12 12 C 1.38886 * 119.92536 * 0.02562 * 11 10 9 13 13 O 1.35750 * 120.06440 * 180.02562 * 12 11 10 14 14 C 1.34828 * 117.00075 * 5.53777 * 13 12 11 15 15 H 1.07993 * 120.00518 * 354.94289 * 14 13 12 16 16 C 1.38663 * 119.99751 * 174.94575 * 14 13 12 17 17 N 1.31556 * 120.00220 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47264 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47375 * 119.99795 * 18 16 14 21 21 H 1.48506 * 109.47301 * 239.99793 * 18 16 14 22 22 C 1.38874 * 119.86623 * 0.27854 * 12 11 10 23 23 C 1.38106 * 119.92542 * 359.44577 * 22 12 11 24 24 H 1.07999 * 120.00212 * 108.64911 * 1 2 3 25 25 H 1.08000 * 120.00098 * 288.64745 * 1 2 3 26 26 H 1.08001 * 120.00349 * 341.35047 * 3 2 1 27 27 H 1.08998 * 109.47278 * 4.99366 * 4 3 2 28 28 H 1.09005 * 109.46966 * 244.99567 * 4 3 2 29 29 H 0.97005 * 120.00223 * 0.02562 * 5 4 3 30 30 H 1.08998 * 109.46621 * 60.00483 * 8 6 5 31 31 H 1.08996 * 109.47266 * 300.00146 * 8 6 5 32 32 H 1.07999 * 119.96503 * 0.02562 * 10 9 8 33 33 H 1.07992 * 120.03608 * 180.02562 * 11 10 9 34 34 H 0.96996 * 120.00178 * 179.97438 * 17 16 14 35 35 H 1.07996 * 120.03745 * 179.72497 * 22 12 11 36 36 H 1.07997 * 119.96326 * 180.27708 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 6 2.6139 0.0006 0.0000 4 6 3.3669 1.2376 -0.4172 5 7 4.2969 1.6251 0.6462 6 6 5.0817 2.7101 0.4929 7 8 5.0175 3.3658 -0.5254 8 6 6.0380 3.1091 1.5871 9 6 6.7910 4.3460 1.1697 10 6 6.2850 5.5970 1.4726 11 6 6.9729 6.7324 1.0920 12 6 8.1737 6.6169 0.4039 13 8 8.8525 7.7311 0.0288 14 6 8.3676 8.9153 0.4536 15 1 7.4335 8.9538 0.9943 16 6 9.0683 10.0839 0.1963 17 7 10.2064 10.0371 -0.4618 18 14 8.3968 11.7244 0.7855 19 1 7.1111 11.5067 1.4960 20 1 9.3728 12.3557 1.7096 21 1 8.1723 12.6152 -0.3813 22 6 8.6761 5.3594 0.0957 23 6 7.9863 4.2278 0.4841 24 1 -0.5400 -0.2991 -0.8862 25 1 -0.5400 0.2991 0.8862 26 1 3.1544 -0.8853 0.2991 27 1 2.6616 2.0490 -0.5967 28 1 3.9248 1.0324 -1.3309 29 1 4.3485 1.1005 1.4605 30 1 6.7430 2.2976 1.7671 31 1 5.4798 3.3149 2.5004 32 1 5.3513 5.6861 2.0080 33 1 6.5774 7.7089 1.3291 34 1 10.6963 10.8546 -0.6422 35 1 9.6074 5.2665 -0.4432 36 1 8.3786 3.2496 0.2487 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816701495.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:03 Heat of formation + Delta-G solvation = -17.886340 kcal Electronic energy + Delta-G solvation = -19103.238443 eV Core-core repulsion = 15939.467448 eV Total energy + Delta-G solvation = -3163.770995 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.07378 -40.36366 -38.25450 -36.71842 -34.42201 -34.31804 -32.83740 -31.76750 -30.36194 -28.16297 -27.03370 -24.98458 -23.62576 -22.50191 -21.35924 -19.84102 -19.03544 -18.76803 -17.71777 -17.23447 -16.69553 -16.32633 -16.16586 -15.81175 -15.51826 -15.33903 -15.07371 -14.85864 -14.70039 -14.41956 -14.18560 -13.90429 -13.62715 -13.43635 -12.97848 -12.72261 -12.47078 -12.26311 -12.24835 -12.09113 -11.17049 -11.03448 -10.77806 -10.30855 -10.22368 -9.86076 -9.75164 -8.88935 -8.47227 -6.15300 0.62617 0.66413 0.92886 1.10431 1.34102 1.42887 1.53033 1.74117 2.17830 2.42837 2.87087 3.19742 3.52721 3.87930 3.92531 4.06695 4.17647 4.20905 4.25209 4.51284 4.53244 4.61431 4.68126 4.74227 4.82164 5.00603 5.10219 5.15552 5.19267 5.27643 5.31931 5.47446 5.57779 5.72557 5.79292 6.03475 6.24362 6.28646 6.65686 6.97351 7.37161 7.79085 8.76547 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034478 B = 0.002903 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.912122 B = 9642.412759 C =10088.324963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.213 4.213 3 C -0.125 4.125 4 C 0.162 3.838 5 N -0.716 5.716 6 C 0.509 3.491 7 O -0.583 6.583 8 C -0.076 4.076 9 C -0.146 4.146 10 C -0.061 4.061 11 C -0.245 4.245 12 C 0.111 3.889 13 O -0.234 6.234 14 C -0.413 4.413 15 H 0.100 0.900 16 C -0.025 4.025 17 N -0.922 5.922 18 Si 1.021 2.979 19 H -0.252 1.252 20 H -0.266 1.266 21 H -0.269 1.269 22 C -0.207 4.207 23 C -0.057 4.057 24 H 0.140 0.860 25 H 0.142 0.858 26 H 0.158 0.842 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.420 0.580 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.117 0.883 34 H 0.273 0.727 35 H 0.112 0.888 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.527 -21.270 7.328 27.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.214 4.214 3 C -0.142 4.142 4 C 0.039 3.961 5 N -0.370 5.370 6 C 0.297 3.703 7 O -0.462 6.462 8 C -0.115 4.115 9 C -0.147 4.147 10 C -0.079 4.079 11 C -0.264 4.264 12 C 0.061 3.939 13 O -0.141 6.141 14 C -0.490 4.490 15 H 0.117 0.883 16 C -0.222 4.222 17 N -0.560 5.560 18 Si 0.840 3.160 19 H -0.176 1.176 20 H -0.190 1.190 21 H -0.194 1.194 22 C -0.226 4.226 23 C -0.075 4.075 24 H 0.158 0.842 25 H 0.160 0.840 26 H 0.175 0.825 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.257 0.743 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.134 0.866 34 H 0.082 0.918 35 H 0.130 0.870 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.222 -20.652 6.392 27.028 hybrid contribution 0.095 0.878 0.022 0.883 sum -16.127 -19.774 6.415 26.310 Atomic orbital electron populations 1.22606 0.90513 0.99040 1.03652 1.23962 0.95497 1.02757 0.99162 1.20993 0.90314 0.98790 1.04150 1.20049 0.91075 0.94152 0.90843 1.45883 1.40177 1.29249 1.21681 1.21265 0.80930 0.79658 0.88445 1.90759 1.69168 1.54124 1.32160 1.20531 0.97445 0.96365 0.97194 1.19287 0.96668 0.94299 1.04494 1.20942 0.98267 0.91306 0.97404 1.21226 0.97508 1.00061 1.07604 1.19952 0.92078 0.88228 0.93635 1.83936 1.50443 1.13022 1.66698 1.21862 1.07776 0.81876 1.37438 0.88279 1.26632 0.95765 1.03161 0.96682 1.70195 1.15761 1.30150 1.39914 0.84500 0.78646 0.74545 0.78293 1.17559 1.19040 1.19372 1.20453 1.03005 0.90325 1.08853 1.20896 0.94185 0.97255 0.95193 0.84233 0.84034 0.82476 0.93201 0.91245 0.74256 0.84787 0.85300 0.84446 0.86558 0.91832 0.86971 0.83404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 14.70 68.09 1.00 -0.18 16 2 C -0.21 -2.89 13.46 22.81 0.31 -2.59 16 3 C -0.12 -1.57 9.62 25.96 0.25 -1.32 16 4 C 0.16 2.90 6.11 85.64 0.52 3.42 16 5 N -0.72 -11.59 5.55 -466.78 -2.59 -14.18 16 6 C 0.51 12.46 7.82 87.66 0.69 13.15 16 7 O -0.58 -21.55 16.03 -3.05 -0.05 -21.60 16 8 C -0.08 -1.51 5.83 29.10 0.17 -1.34 16 9 C -0.15 -4.74 4.38 -19.84 -0.09 -4.83 16 10 C -0.06 -2.26 9.69 22.25 0.22 -2.05 16 11 C -0.24 -11.47 9.17 22.39 0.21 -11.27 16 12 C 0.11 5.92 6.65 22.58 0.15 6.07 16 13 O -0.23 -14.85 9.76 -22.72 -0.22 -15.07 16 14 C -0.41 -25.18 9.49 67.92 0.64 -24.54 16 15 H 0.10 5.59 5.20 -2.91 -0.02 5.57 16 16 C -0.03 -1.49 5.49 84.84 0.47 -1.03 16 17 N -0.92 -58.35 13.67 21.62 0.30 -58.06 16 18 Si 1.02 44.39 29.55 68.60 2.03 46.42 16 19 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 22 C -0.21 -9.48 9.99 22.39 0.22 -9.25 16 23 C -0.06 -2.05 9.69 22.25 0.22 -1.83 16 24 H 0.14 0.90 8.06 -2.91 -0.02 0.87 16 25 H 0.14 0.89 8.06 -2.91 -0.02 0.86 16 26 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 27 H 0.05 1.10 7.94 -2.39 -0.02 1.08 16 28 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.42 3.46 8.46 -92.70 -0.78 2.67 16 30 H 0.13 1.70 8.08 -2.39 -0.02 1.68 16 31 H 0.13 1.75 8.08 -2.39 -0.02 1.73 16 32 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 33 H 0.12 5.54 5.64 -2.91 -0.02 5.52 16 34 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 35 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 36 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -84.35 326.18 4.75 -79.60 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.32 Total: 20.47 kcal Atomic # 6 Polarization: -42.55 SS G_CDS: 4.97 Total: -37.58 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -2.29 Total: -72.23 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.27 Total: -36.67 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -84.35 4.75 -79.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816701495.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.715 kcal (2) G-P(sol) polarization free energy of solvation -84.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds