Wall clock time and date at job start Mon Mar 30 2020 01:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47292 * 121.25621 * 3 2 1 5 5 C 1.37097 * 120.00215 * 271.09992 * 4 3 2 6 6 H 1.08001 * 119.99905 * 188.80569 * 5 4 3 7 7 C 1.38947 * 119.99761 * 8.79497 * 5 4 3 8 8 N 1.31408 * 120.00314 * 16.17949 * 7 5 4 9 9 Si 1.86801 * 119.99835 * 196.17438 * 7 5 4 10 10 H 1.48492 * 109.47366 * 60.00562 * 9 7 5 11 11 H 1.48500 * 109.46972 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47095 * 300.00029 * 9 7 5 13 13 C 1.34779 * 119.99800 * 91.10047 * 4 3 2 14 14 O 1.21296 * 119.99828 * 175.88375 * 13 4 3 15 15 C 1.50699 * 120.00380 * 355.87254 * 13 4 3 16 16 C 1.52993 * 109.47706 * 196.84508 * 15 13 4 17 17 O 1.42898 * 109.47354 * 316.85048 * 15 13 4 18 18 C 1.50707 * 109.46795 * 76.84409 * 15 13 4 19 19 C 1.38226 * 120.00498 * 228.31601 * 18 15 13 20 20 C 1.38232 * 120.00356 * 180.02562 * 19 18 15 21 21 C 1.38237 * 119.99832 * 359.95256 * 20 19 18 22 22 C 1.38232 * 119.99862 * 0.27625 * 21 20 19 23 23 C 1.38229 * 120.00225 * 359.53992 * 22 21 20 24 24 H 4.40645 * 5.51460 * 180.02562 * 4 1 2 25 25 H 1.09004 * 109.46883 * 1.25274 * 3 2 1 26 26 H 1.09002 * 109.46878 * 241.25923 * 3 2 1 27 27 H 0.96993 * 120.00466 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.47216 * 300.00459 * 16 15 13 29 29 H 1.08999 * 109.47036 * 60.00265 * 16 15 13 30 30 H 1.09000 * 109.47356 * 180.02562 * 16 15 13 31 31 H 0.96706 * 113.99987 * 80.76619 * 17 15 13 32 32 H 1.08000 * 119.99625 * 0.02562 * 19 18 15 33 33 H 1.07999 * 120.00217 * 179.97438 * 20 19 18 34 34 H 1.08003 * 119.99966 * 180.02562 * 21 20 19 35 35 H 1.08009 * 119.99970 * 179.72069 * 22 21 20 36 36 H 1.07996 * 120.00420 * 180.20787 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7175 -1.1807 5 6 3.3414 0.0421 -2.3556 6 1 3.8329 0.5342 -3.1818 7 6 2.9194 -1.2755 -2.4832 8 7 2.0563 -1.7750 -1.6274 9 14 3.5788 -2.3371 -3.8717 10 1 5.0554 -2.4431 -3.7553 11 1 2.9767 -3.6920 -3.7877 12 1 3.2280 -1.7200 -5.1761 13 6 3.3792 2.0410 -1.1118 14 8 3.8536 2.6203 -2.0661 15 6 3.0637 2.8012 0.1505 16 6 3.0292 4.3005 -0.1520 17 8 1.7909 2.3868 0.6507 18 6 4.1247 2.5215 1.1837 19 6 3.7611 2.1762 2.4718 20 6 4.7343 1.9201 3.4196 21 6 6.0711 2.0085 3.0789 22 6 6.4347 2.3585 1.7920 23 6 5.4615 2.6108 0.8432 24 1 -1.0502 0.0001 0.0002 25 1 3.0098 -1.0266 -0.0225 26 1 3.0091 0.4950 0.9011 27 1 1.7614 -2.6946 -1.7167 28 1 4.0001 4.6167 -0.5335 29 1 2.2618 4.5028 -0.8992 30 1 2.8015 4.8503 0.7612 31 1 1.8154 1.5600 1.1517 32 1 2.7167 2.1063 2.7377 33 1 4.4502 1.6507 4.4261 34 1 6.8314 1.8081 3.8193 35 1 7.4792 2.4320 1.5270 36 1 5.7456 2.8810 -0.1631 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817600092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:30 Heat of formation + Delta-G solvation = 31.949191 kcal Electronic energy + Delta-G solvation = -21750.977599 eV Core-core repulsion = 18589.367636 eV Total energy + Delta-G solvation = -3161.609964 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.31959 -38.19164 -36.09981 -35.45213 -32.05887 -31.68615 -31.22633 -30.64124 -28.99496 -26.61295 -25.28707 -23.36189 -22.36163 -21.31926 -19.28396 -17.92673 -17.71628 -16.73826 -16.32677 -15.66295 -15.04120 -14.78379 -14.28768 -14.22287 -13.94387 -13.44594 -13.25354 -12.80408 -12.58046 -12.37240 -12.07798 -11.87510 -11.79733 -11.53151 -11.38590 -11.02426 -10.86404 -10.66272 -10.58184 -10.38634 -10.30184 -9.40784 -9.23222 -8.85073 -8.75705 -8.71729 -8.09332 -7.95779 -6.33344 -3.87742 1.47670 1.56970 3.13047 3.21989 3.25456 3.55397 3.83499 3.94105 4.07993 4.18608 4.73867 4.78986 4.88955 5.09046 5.11568 5.14863 5.31216 5.43377 5.59272 5.64511 5.72797 5.80577 6.05984 6.13195 6.17143 6.27549 6.31505 6.55557 6.62111 6.67760 6.78066 6.85862 7.06790 7.14694 7.51410 7.92393 8.00140 8.37407 8.86401 9.07042 9.30687 9.82249 10.62581 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.007307 C = 0.006915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.921686 B = 3831.133046 C = 4048.429304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.110 4.110 3 C 0.222 3.778 4 N -0.428 5.428 5 C -0.309 4.309 6 H 0.107 0.893 7 C 0.029 3.971 8 N -0.868 5.868 9 Si 0.929 3.071 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.435 3.565 14 O -0.580 6.580 15 C 0.160 3.840 16 C -0.112 4.112 17 O -0.550 6.550 18 C -0.104 4.104 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.098 4.098 24 H 0.199 0.801 25 H 0.123 0.877 26 H 0.054 0.946 27 H 0.270 0.730 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.377 0.623 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 3.815 10.440 11.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.112 4.112 3 C 0.099 3.901 4 N -0.145 5.145 5 C -0.436 4.436 6 H 0.125 0.875 7 C -0.175 4.175 8 N -0.507 5.507 9 Si 0.755 3.245 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.223 3.777 14 O -0.465 6.465 15 C 0.116 3.884 16 C -0.170 4.170 17 O -0.362 6.362 18 C -0.105 4.105 19 C -0.138 4.138 20 C -0.137 4.137 21 C -0.143 4.143 22 C -0.135 4.135 23 C -0.116 4.116 24 H 0.216 0.784 25 H 0.141 0.859 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.232 0.768 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.630 4.402 9.685 11.241 hybrid contribution 0.020 -1.344 -0.388 1.399 sum 3.649 3.058 9.297 10.445 Atomic orbital electron populations 1.24215 0.95296 1.05042 1.02647 1.22874 0.94102 0.96280 0.97955 1.18726 0.84612 1.00333 0.86467 1.43688 1.54888 1.05666 1.10227 1.19754 1.36664 0.94464 0.92767 0.87490 1.25297 0.95418 0.97797 0.98945 1.70019 1.27711 1.16030 1.36970 0.85957 0.79153 0.78525 0.80863 1.19856 1.20913 1.19849 1.20321 0.85492 0.82375 0.89523 1.90513 1.49545 1.67688 1.38750 1.20279 0.81929 0.96256 0.89931 1.21493 1.03446 0.90591 1.01459 1.86668 1.29116 1.46152 1.74298 1.20486 0.95240 0.99901 0.94829 1.20987 0.99958 1.00216 0.92675 1.21044 0.92941 1.00530 0.99148 1.21124 0.96120 1.00492 0.96520 1.21127 0.99279 0.99771 0.93361 1.21120 0.92032 0.98414 1.00025 0.78402 0.85906 0.92824 0.91943 0.90553 0.91358 0.92248 0.76845 0.85653 0.86046 0.86290 0.86047 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.34 19.24 29.55 0.57 -4.77 16 2 C -0.11 -2.50 8.37 -37.12 -0.31 -2.82 16 3 C 0.22 5.03 4.72 -6.83 -0.03 5.00 16 4 N -0.43 -10.97 2.58 -117.94 -0.30 -11.28 16 5 C -0.31 -8.56 9.49 -14.93 -0.14 -8.70 16 6 H 0.11 3.10 7.24 -52.49 -0.38 2.72 16 7 C 0.03 0.74 5.13 -17.47 -0.09 0.65 16 8 N -0.87 -22.43 8.66 55.50 0.48 -21.95 16 9 Si 0.93 20.57 29.58 -169.99 -5.03 15.54 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 C 0.44 10.77 5.74 -10.99 -0.06 10.70 16 14 O -0.58 -15.88 15.55 5.54 0.09 -15.79 16 15 C 0.16 3.22 0.92 -92.92 -0.09 3.13 16 16 C -0.11 -2.04 8.18 37.15 0.30 -1.74 16 17 O -0.55 -11.05 10.66 -35.23 -0.38 -11.42 16 18 C -0.10 -1.80 3.62 -104.62 -0.38 -2.18 16 19 C -0.12 -1.79 8.06 -39.59 -0.32 -2.11 16 20 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 21 C -0.12 -1.55 10.05 -39.58 -0.40 -1.94 16 22 C -0.12 -1.63 10.05 -39.59 -0.40 -2.03 16 23 C -0.10 -1.64 8.97 -39.58 -0.36 -2.00 16 24 H 0.20 3.44 7.80 -54.08 -0.42 3.01 16 25 H 0.12 2.96 6.09 -51.93 -0.32 2.64 16 26 H 0.05 1.07 3.60 -51.93 -0.19 0.88 16 27 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 28 H 0.08 1.35 7.80 -51.93 -0.40 0.94 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.38 7.07 3.11 45.56 0.14 7.21 16 32 H 0.13 1.72 6.56 -52.49 -0.34 1.38 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 36 H 0.13 2.34 7.65 -52.49 -0.40 1.94 16 LS Contribution 299.54 15.07 4.51 4.51 Total: -1.00 -30.94 299.54 -6.29 -37.23 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -3.56 Total: 13.86 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -2.10 Total: -10.70 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.18 Total: -33.23 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.29 Total: -27.21 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.94 -6.29 -37.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817600092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.180 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds