Wall clock time and date at job start Mon Mar 30 2020 01:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47292 * 121.25621 * 3 2 1 5 5 C 1.37097 * 120.00215 * 271.09992 * 4 3 2 6 6 H 1.08001 * 119.99905 * 188.80569 * 5 4 3 7 7 C 1.38947 * 119.99761 * 8.79497 * 5 4 3 8 8 N 1.31408 * 120.00314 * 16.17949 * 7 5 4 9 9 Si 1.86801 * 119.99835 * 196.17438 * 7 5 4 10 10 H 1.48492 * 109.47366 * 60.00562 * 9 7 5 11 11 H 1.48500 * 109.46972 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47095 * 300.00029 * 9 7 5 13 13 C 1.34779 * 119.99800 * 91.10047 * 4 3 2 14 14 O 1.21296 * 119.99828 * 175.88375 * 13 4 3 15 15 C 1.50699 * 120.00380 * 355.87254 * 13 4 3 16 16 C 1.52993 * 109.47706 * 196.84508 * 15 13 4 17 17 O 1.42898 * 109.47354 * 316.85048 * 15 13 4 18 18 C 1.50707 * 109.46795 * 76.84409 * 15 13 4 19 19 C 1.38226 * 120.00498 * 228.31601 * 18 15 13 20 20 C 1.38232 * 120.00356 * 180.02562 * 19 18 15 21 21 C 1.38237 * 119.99832 * 359.95256 * 20 19 18 22 22 C 1.38232 * 119.99862 * 0.27625 * 21 20 19 23 23 C 1.38229 * 120.00225 * 359.53992 * 22 21 20 24 24 H 4.40645 * 5.51460 * 180.02562 * 4 1 2 25 25 H 1.09004 * 109.46883 * 1.25274 * 3 2 1 26 26 H 1.09002 * 109.46878 * 241.25923 * 3 2 1 27 27 H 0.96993 * 120.00466 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.47216 * 300.00459 * 16 15 13 29 29 H 1.08999 * 109.47036 * 60.00265 * 16 15 13 30 30 H 1.09000 * 109.47356 * 180.02562 * 16 15 13 31 31 H 0.96706 * 113.99987 * 80.76619 * 17 15 13 32 32 H 1.08000 * 119.99625 * 0.02562 * 19 18 15 33 33 H 1.07999 * 120.00217 * 179.97438 * 20 19 18 34 34 H 1.08003 * 119.99966 * 180.02562 * 21 20 19 35 35 H 1.08009 * 119.99970 * 179.72069 * 22 21 20 36 36 H 1.07996 * 120.00420 * 180.20787 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7175 -1.1807 5 6 3.3414 0.0421 -2.3556 6 1 3.8329 0.5342 -3.1818 7 6 2.9194 -1.2755 -2.4832 8 7 2.0563 -1.7750 -1.6274 9 14 3.5788 -2.3371 -3.8717 10 1 5.0554 -2.4431 -3.7553 11 1 2.9767 -3.6920 -3.7877 12 1 3.2280 -1.7200 -5.1761 13 6 3.3792 2.0410 -1.1118 14 8 3.8536 2.6203 -2.0661 15 6 3.0637 2.8012 0.1505 16 6 3.0292 4.3005 -0.1520 17 8 1.7909 2.3868 0.6507 18 6 4.1247 2.5215 1.1837 19 6 3.7611 2.1762 2.4718 20 6 4.7343 1.9201 3.4196 21 6 6.0711 2.0085 3.0789 22 6 6.4347 2.3585 1.7920 23 6 5.4615 2.6108 0.8432 24 1 -1.0502 0.0001 0.0002 25 1 3.0098 -1.0266 -0.0225 26 1 3.0091 0.4950 0.9011 27 1 1.7614 -2.6946 -1.7167 28 1 4.0001 4.6167 -0.5335 29 1 2.2618 4.5028 -0.8992 30 1 2.8015 4.8503 0.7612 31 1 1.8154 1.5600 1.1517 32 1 2.7167 2.1063 2.7377 33 1 4.4502 1.6507 4.4261 34 1 6.8314 1.8081 3.8193 35 1 7.4792 2.4320 1.5270 36 1 5.7456 2.8810 -0.1631 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817600092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:30 Heat of formation + Delta-G solvation = 12.819043 kcal Electronic energy + Delta-G solvation = -21751.807145 eV Core-core repulsion = 18589.367636 eV Total energy + Delta-G solvation = -3162.439509 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.87101 -39.63217 -37.75359 -37.31644 -33.88103 -33.30556 -32.93574 -31.75702 -30.31671 -28.47445 -27.12015 -24.89482 -23.50599 -22.74047 -20.96373 -19.78815 -19.09707 -18.46063 -18.13301 -17.12703 -16.61530 -16.32001 -15.87429 -15.69341 -15.39830 -15.12129 -14.53738 -14.41843 -14.22860 -13.93134 -13.56701 -13.44233 -13.36204 -13.10122 -12.82342 -12.76151 -12.52690 -12.32323 -12.16270 -11.96653 -11.77956 -11.30740 -10.99549 -10.58718 -10.33490 -9.94696 -9.83242 -9.59612 -8.31542 -5.95420 0.33840 0.46005 1.32747 1.38987 1.48977 1.75267 2.07082 2.29095 2.40501 2.80022 2.96973 3.10277 3.26690 3.52235 3.76545 3.93352 4.01625 4.10640 4.21321 4.29010 4.48419 4.58932 4.63572 4.73484 4.84219 4.99603 5.01186 5.10651 5.13605 5.40502 5.41474 5.53185 5.57578 5.59017 5.95105 6.07262 6.37044 6.47594 7.06423 7.15192 7.34686 7.87629 8.61135 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.007307 C = 0.006915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.921686 B = 3831.133046 C = 4048.429304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.149 4.149 3 C 0.228 3.772 4 N -0.439 5.439 5 C -0.353 4.353 6 H 0.078 0.922 7 C 0.002 3.998 8 N -0.871 5.871 9 Si 0.989 3.011 10 H -0.269 1.269 11 H -0.268 1.268 12 H -0.279 1.279 13 C 0.422 3.578 14 O -0.623 6.623 15 C 0.167 3.833 16 C -0.110 4.110 17 O -0.553 6.553 18 C -0.124 4.124 19 C -0.126 4.126 20 C -0.110 4.110 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.123 4.123 24 H 0.233 0.767 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.274 0.726 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.381 0.619 32 H 0.136 0.864 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.142 0.858 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.708 2.877 13.053 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.151 4.151 3 C 0.106 3.894 4 N -0.156 5.156 5 C -0.480 4.480 6 H 0.096 0.904 7 C -0.201 4.201 8 N -0.509 5.509 9 Si 0.813 3.187 10 H -0.194 1.194 11 H -0.192 1.192 12 H -0.205 1.205 13 C 0.212 3.788 14 O -0.510 6.510 15 C 0.123 3.877 16 C -0.167 4.167 17 O -0.366 6.366 18 C -0.125 4.125 19 C -0.144 4.144 20 C -0.128 4.128 21 C -0.132 4.132 22 C -0.137 4.137 23 C -0.141 4.141 24 H 0.250 0.750 25 H 0.123 0.877 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.237 0.763 32 H 0.154 0.846 33 H 0.177 0.823 34 H 0.175 0.825 35 H 0.160 0.840 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.660 3.450 12.337 13.322 hybrid contribution -0.002 -1.059 -1.148 1.562 sum 3.658 2.391 11.189 12.012 Atomic orbital electron populations 1.25088 0.96259 1.03322 1.00911 1.23068 0.94594 0.97861 0.99537 1.18664 0.85113 0.99282 0.86386 1.43869 1.55003 1.06254 1.10461 1.19668 1.38999 0.95877 0.93488 0.90449 1.25986 0.95028 0.97899 1.01187 1.70124 1.27059 1.16258 1.37456 0.85068 0.78744 0.77228 0.77694 1.19408 1.19205 1.20494 1.21305 0.84284 0.82361 0.90888 1.90457 1.51180 1.68595 1.40796 1.20111 0.82918 0.96030 0.88670 1.21495 1.02764 0.90101 1.02338 1.86650 1.29342 1.46369 1.74247 1.20245 0.94352 1.02611 0.95262 1.21169 1.01255 1.00074 0.91922 1.21492 0.92521 0.98563 1.00184 1.21591 0.97107 0.98178 0.96286 1.21403 0.99681 0.99002 0.93590 1.21048 0.92899 1.00464 0.99680 0.75024 0.87714 0.90189 0.91511 0.90850 0.93075 0.89249 0.76340 0.84627 0.82333 0.82454 0.83993 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.65 19.24 74.32 1.43 -8.22 16 2 C -0.15 -6.71 8.37 31.13 0.26 -6.45 16 3 C 0.23 10.49 4.72 84.58 0.40 10.89 16 4 N -0.44 -23.45 2.58 -645.43 -1.67 -25.12 16 5 C -0.35 -20.45 9.49 84.04 0.80 -19.65 16 6 H 0.08 4.81 7.24 -2.91 -0.02 4.79 16 7 C 0.00 0.10 5.13 84.93 0.44 0.53 16 8 N -0.87 -44.99 8.66 21.66 0.19 -44.81 16 9 Si 0.99 42.58 29.58 68.60 2.03 44.61 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 13 C 0.42 21.95 5.74 87.66 0.50 22.46 16 14 O -0.62 -36.46 15.55 -3.08 -0.05 -36.50 16 15 C 0.17 6.84 0.92 -12.29 -0.01 6.83 16 16 C -0.11 -4.08 8.18 71.98 0.59 -3.49 16 17 O -0.55 -22.12 10.66 -148.98 -1.59 -23.71 16 18 C -0.12 -4.27 3.62 -19.86 -0.07 -4.34 16 19 C -0.13 -3.47 8.06 22.27 0.18 -3.29 16 20 C -0.11 -2.34 10.05 22.27 0.22 -2.12 16 21 C -0.11 -2.37 10.05 22.27 0.22 -2.14 16 22 C -0.12 -3.08 10.05 22.27 0.22 -2.86 16 23 C -0.12 -4.18 8.97 22.27 0.20 -3.98 16 24 H 0.23 7.37 7.80 -4.41 -0.03 7.34 16 25 H 0.11 5.14 6.09 -2.39 -0.01 5.13 16 26 H 0.08 3.18 3.60 -2.39 -0.01 3.17 16 27 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 28 H 0.07 2.73 7.80 -2.39 -0.02 2.71 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.38 14.04 3.11 -74.05 -0.23 13.81 16 32 H 0.14 3.38 6.56 -2.91 -0.02 3.36 16 33 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 35 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 36 H 0.10 3.91 7.65 -2.91 -0.02 3.89 16 Total: -1.00 -70.01 299.54 5.17 -64.85 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: 0.87 Total: 36.51 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 5.38 Total: -15.83 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -1.48 Total: -69.92 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -1.64 Total: -60.21 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -70.01 5.17 -64.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817600092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.666 kcal (2) G-P(sol) polarization free energy of solvation -70.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds