Wall clock time and date at job start Mon Mar 30 2020 00:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 120.00337 * 2 1 4 4 H 1.48506 * 109.46735 * 270.00011 * 3 2 1 5 5 H 1.48495 * 109.46834 * 29.99846 * 3 2 1 6 6 H 1.48501 * 109.47081 * 150.00092 * 3 2 1 7 7 C 1.38803 * 119.99880 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00329 * 180.02562 * 7 2 1 9 9 S 1.76208 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99723 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47124 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47589 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47625 * 180.02562 * 12 11 10 14 14 C 1.46889 * 111.00113 * 175.01039 * 13 12 11 15 15 C 1.50703 * 110.02169 * 303.22279 * 14 13 12 16 16 O 1.20820 * 120.00447 * 144.12735 * 15 14 13 17 17 O 1.34234 * 119.99515 * 324.13332 * 15 14 13 18 18 C 1.53875 * 110.03081 * 181.83349 * 14 13 12 19 19 C 1.54372 * 106.54470 * 240.72603 * 18 14 13 20 20 C 1.54886 * 104.21751 * 23.57659 * 19 18 14 21 21 C 1.54271 * 110.03543 * 64.61648 * 14 13 12 22 22 H 0.97002 * 119.99866 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47905 * 60.00053 * 10 9 7 24 24 H 1.09004 * 109.47510 * 299.99572 * 10 9 7 25 25 H 1.08997 * 109.47469 * 59.99839 * 11 10 9 26 26 H 1.09008 * 109.46874 * 299.99962 * 11 10 9 27 27 H 1.08996 * 109.47504 * 59.99007 * 12 11 10 28 28 H 1.09008 * 109.46755 * 299.99757 * 12 11 10 29 29 H 1.00904 * 110.99853 * 51.05159 * 13 12 11 30 30 H 0.96700 * 116.99550 * 179.97438 * 17 15 14 31 31 H 1.08990 * 110.03428 * 359.97438 * 18 14 13 32 32 H 1.09005 * 110.03601 * 121.43264 * 18 14 13 33 33 H 1.08995 * 110.46913 * 264.89594 * 19 18 14 34 34 H 1.09006 * 110.60540 * 142.32351 * 19 18 14 35 35 H 1.08996 * 110.76048 * 203.75808 * 20 19 18 36 36 H 1.09002 * 110.75803 * 80.38415 * 20 19 18 37 37 H 1.09000 * 110.48669 * 214.35312 * 21 14 13 38 38 H 1.09001 * 110.48194 * 336.99289 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7281 0.0005 10 6 2.5156 -3.8915 0.0021 11 6 1.9791 -5.3243 0.0017 12 6 3.1511 -6.3079 0.0037 13 7 2.6360 -7.6836 0.0027 14 6 3.7309 -8.6556 -0.1147 15 6 4.5346 -8.3797 -1.3594 16 8 5.7309 -8.5488 -1.3560 17 8 3.9212 -7.9458 -2.4718 18 6 3.1639 -10.0854 -0.1597 19 6 3.7487 -10.8288 1.0603 20 6 4.1079 -9.6995 2.0576 21 6 4.6404 -8.5800 1.1291 22 1 -0.4850 0.8401 0.0004 23 1 3.1237 -3.7311 0.8925 24 1 3.1250 -3.7319 -0.8875 25 1 1.3714 -5.4845 -0.8888 26 1 1.3695 -5.4842 0.8911 27 1 3.7585 -6.1475 0.8944 28 1 3.7610 -6.1480 -0.8855 29 1 1.9559 -7.8145 -0.7312 30 1 4.4785 -7.7822 -3.2449 31 1 2.0763 -10.0580 -0.0939 32 1 3.4707 -10.5800 -1.0813 33 1 4.6420 -11.3846 0.7757 34 1 3.0059 -11.4985 1.4937 35 1 4.8827 -10.0278 2.7504 36 1 3.2221 -9.3647 2.5975 37 1 5.6778 -8.7726 0.8554 38 1 4.5466 -7.6071 1.6116 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819090788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:05 Heat of formation + Delta-G solvation = -115.124992 kcal Electronic energy + Delta-G solvation = -18932.078229 eV Core-core repulsion = 15899.534601 eV Total energy + Delta-G solvation = -3032.543628 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.08688 -38.28460 -36.44586 -35.39227 -32.44732 -32.11507 -29.22257 -28.04732 -25.66670 -24.46472 -23.60427 -21.60017 -20.59087 -19.60737 -18.21722 -17.60361 -17.34086 -16.18397 -15.78494 -15.19895 -15.00040 -14.80119 -14.68573 -13.92326 -13.68532 -13.39052 -13.03960 -12.57854 -12.33112 -11.97055 -11.81985 -11.58029 -11.45193 -11.36551 -11.28844 -11.13435 -11.08048 -11.04549 -10.78437 -10.70587 -10.60984 -10.35875 -9.53661 -9.05519 -8.71454 -8.30235 -6.52276 -6.22479 -3.92607 1.94057 2.73545 3.21625 3.22528 3.29398 3.52783 3.95013 4.15646 4.23065 4.25209 4.73491 4.98104 5.06434 5.13578 5.16120 5.25769 5.27463 5.37512 5.41538 5.45473 5.52318 5.60233 5.69470 5.75022 5.82426 5.88327 5.92125 6.09447 6.13623 6.27460 6.30835 6.57081 6.66641 6.83319 7.16703 7.61004 7.64455 8.37069 9.23905 10.85717 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032727 B = 0.003325 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.359166 B = 8418.189451 C = 8620.338519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.072 0.928 9 S -0.130 6.130 10 C -0.113 4.113 11 C -0.094 4.094 12 C 0.055 3.945 13 N -0.659 5.659 14 C 0.127 3.873 15 C 0.453 3.547 16 O -0.516 6.516 17 O -0.515 6.515 18 C -0.108 4.108 19 C -0.121 4.121 20 C -0.116 4.116 21 C -0.113 4.113 22 H 0.267 0.733 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.032 0.968 29 H 0.353 0.647 30 H 0.408 0.592 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.900 -20.777 -0.373 21.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.665 4.665 8 H 0.090 0.910 9 S 0.098 5.902 10 C -0.262 4.262 11 C -0.133 4.133 12 C -0.075 4.075 13 N -0.291 5.291 14 C 0.034 3.966 15 C 0.293 3.707 16 O -0.403 6.403 17 O -0.327 6.327 18 C -0.146 4.146 19 C -0.159 4.159 20 C -0.153 4.153 21 C -0.151 4.151 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.050 0.950 29 H 0.173 0.827 30 H 0.267 0.733 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.659 -21.001 0.649 21.759 hybrid contribution 2.562 1.638 -1.671 3.470 sum 8.222 -19.362 -1.023 21.060 Atomic orbital electron populations 1.70021 1.05911 1.27315 1.47279 1.25011 0.95080 0.99073 0.94611 0.86170 0.79467 0.81564 0.78352 1.20295 1.20736 1.19683 1.22698 0.94519 0.90831 1.58460 0.91001 1.84615 1.09410 0.99348 1.96845 1.23216 1.02921 0.97293 1.02754 1.21233 0.96655 0.92090 1.03278 1.22221 0.97938 0.86750 1.00621 1.60730 1.12632 1.02953 1.52786 1.21846 0.90942 0.95205 0.88650 1.25110 0.87835 0.72233 0.85547 1.90677 1.16800 1.48501 1.84275 1.84587 1.46519 1.78375 1.23177 1.22231 1.02053 0.91082 0.99254 1.22351 1.00744 0.97718 0.95103 1.22421 1.01328 0.94478 0.97102 1.22561 0.98580 1.01048 0.92893 0.92309 0.92096 0.92393 0.91547 0.90526 0.90587 0.95001 0.82722 0.73325 0.89020 0.91527 0.91536 0.90887 0.91189 0.90364 0.89584 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.93 9.50 30.94 0.29 -14.63 16 8 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 9 S -0.13 -3.42 21.44 -107.50 -2.30 -5.72 16 10 C -0.11 -2.28 5.67 37.16 0.21 -2.07 16 11 C -0.09 -1.50 5.43 -26.73 -0.15 -1.65 16 12 C 0.05 0.73 5.08 -3.82 -0.02 0.71 16 13 N -0.66 -7.37 5.91 -100.00 -0.59 -7.96 16 14 C 0.13 1.33 0.82 -131.64 -0.11 1.22 16 15 C 0.45 5.36 5.60 36.01 0.20 5.56 16 16 O -0.52 -7.42 16.31 -18.75 -0.31 -7.73 16 17 O -0.51 -5.15 12.25 -39.27 -0.48 -5.63 16 18 C -0.11 -0.91 6.19 -25.56 -0.16 -1.07 16 19 C -0.12 -0.91 6.83 -25.02 -0.17 -1.08 16 20 C -0.12 -0.96 6.91 -24.74 -0.17 -1.13 16 21 C -0.11 -1.18 5.79 -25.07 -0.15 -1.32 16 22 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.06 1.23 8.14 -51.91 -0.42 0.80 16 24 H 0.06 1.17 8.14 -51.91 -0.42 0.75 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.08 1.26 8.14 -51.92 -0.42 0.83 16 27 H 0.08 1.02 6.37 -51.93 -0.33 0.69 16 28 H 0.03 0.45 6.33 -51.92 -0.33 0.12 16 29 H 0.35 3.74 8.42 -39.29 -0.33 3.41 16 30 H 0.41 2.60 9.10 45.56 0.41 3.02 16 31 H 0.09 0.71 7.88 -51.93 -0.41 0.30 16 32 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.97 6.80 -51.93 -0.35 0.62 16 38 H 0.08 0.92 6.08 -51.93 -0.32 0.61 16 LS Contribution 323.19 15.07 4.87 4.87 Total: -1.00 -32.92 323.19 -8.39 -41.31 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.98 Total: 3.10 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -0.31 Total: -13.52 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.14 Total: -33.29 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.79 Total: -13.36 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -2.30 Total: -5.72 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.92 -8.39 -41.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819090788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.817 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds