Wall clock time and date at job start Mon Mar 30 2020 01:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86797 * 120.00147 * 2 1 4 4 H 1.48502 * 109.46908 * 270.00088 * 3 2 1 5 5 H 1.48497 * 109.47347 * 29.99951 * 3 2 1 6 6 H 1.48500 * 109.46890 * 150.00128 * 3 2 1 7 7 C 1.38799 * 119.99344 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99585 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00466 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99868 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47031 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47149 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.47044 * 179.97438 * 12 11 10 14 14 C 1.46839 * 110.99987 * 294.66854 * 13 12 11 15 15 C 1.53041 * 109.52401 * 185.84099 * 14 13 12 16 16 C 1.53125 * 109.27386 * 300.81871 * 15 14 13 17 17 C 1.53116 * 109.15943 * 57.65246 * 16 15 14 18 18 C 1.46927 * 110.98508 * 58.89645 * 13 12 11 19 19 H 1.09000 * 109.45383 * 294.15982 * 18 13 12 20 20 C 1.50705 * 109.52158 * 54.15582 * 18 13 12 21 21 O 1.20826 * 119.99714 * 28.97923 * 20 18 13 22 22 O 1.34222 * 120.00341 * 208.98748 * 20 18 13 23 23 H 0.97002 * 119.99384 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47314 * 60.00155 * 10 9 7 25 25 H 1.09011 * 109.47225 * 299.99675 * 10 9 7 26 26 H 1.09002 * 109.47196 * 59.99776 * 11 10 9 27 27 H 1.08998 * 109.46623 * 299.99444 * 11 10 9 28 28 H 1.09002 * 109.47311 * 59.99777 * 12 11 10 29 29 H 1.09005 * 109.46707 * 299.99565 * 12 11 10 30 30 H 1.08995 * 109.46734 * 65.82362 * 14 13 12 31 31 H 1.09000 * 109.46435 * 305.85197 * 14 13 12 32 32 H 1.09000 * 109.50538 * 180.88012 * 15 14 13 33 33 H 1.09002 * 109.53604 * 60.77479 * 15 14 13 34 34 H 1.08997 * 109.52288 * 297.74744 * 16 15 14 35 35 H 1.09003 * 109.57048 * 177.59064 * 16 15 14 36 36 H 1.09000 * 109.50350 * 62.28966 * 17 16 15 37 37 H 1.09003 * 109.50179 * 182.36231 * 17 16 15 38 38 H 0.96696 * 117.00709 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9791 -5.3244 -0.0012 12 6 3.1511 -6.3078 -0.0005 13 7 2.6358 -7.6836 -0.0005 14 6 1.9150 -7.9755 1.2450 15 6 1.5201 -9.4538 1.2729 16 6 0.6334 -9.7631 0.0635 17 6 1.3895 -9.4048 -1.2188 18 6 1.7881 -7.9280 -1.1755 19 1 0.8915 -7.3116 -1.1107 20 6 2.5495 -7.5764 -2.4276 21 8 3.7536 -7.6733 -2.4498 22 8 1.8899 -7.1554 -3.5182 23 1 -0.4849 0.8401 -0.0004 24 1 3.1243 -3.7315 0.8895 25 1 3.1243 -3.7314 -0.8906 26 1 1.3707 -5.4841 -0.8914 27 1 1.3703 -5.4847 0.8886 28 1 3.7591 -6.1480 0.8899 29 1 3.7602 -6.1476 -0.8902 30 1 1.0178 -7.3589 1.2984 31 1 2.5581 -7.7553 2.0970 32 1 0.9714 -9.6667 2.1904 33 1 2.4173 -10.0715 1.2337 34 1 -0.2821 -9.1745 0.1230 35 1 0.3843 -10.8243 0.0552 36 1 2.2850 -10.0213 -1.2975 37 1 0.7478 -9.5834 -2.0817 38 1 2.4212 -6.9413 -4.2973 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821324541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:25 Heat of formation + Delta-G solvation = -107.046459 kcal Electronic energy + Delta-G solvation = -19336.074296 eV Core-core repulsion = 16303.880980 eV Total energy + Delta-G solvation = -3032.193316 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.82959 -38.71638 -36.07987 -34.95440 -32.44616 -31.56865 -31.44707 -26.56578 -25.59902 -24.69672 -23.31771 -21.78994 -21.28594 -19.30070 -18.13650 -17.47757 -16.79221 -16.05629 -15.73696 -15.07977 -14.81237 -14.62013 -14.32745 -14.16502 -13.85834 -13.39530 -13.26359 -12.87459 -12.71087 -12.06882 -11.82843 -11.67040 -11.53612 -11.45879 -11.21453 -11.05861 -10.99526 -10.83878 -10.70540 -10.57380 -10.33069 -10.16539 -9.71351 -9.06783 -8.42559 -8.20656 -6.54873 -6.23924 -3.94476 2.15043 2.82898 3.21150 3.21855 3.28652 3.55350 3.81143 4.21383 4.52262 4.69139 4.70422 4.90857 5.05060 5.12174 5.19739 5.23745 5.26143 5.35102 5.45955 5.52303 5.59516 5.61694 5.65239 5.71272 5.85930 5.89059 5.91516 6.06892 6.14810 6.29679 6.44664 6.47632 6.67168 6.86095 6.94909 7.59821 7.89893 8.35887 9.22569 10.84337 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027203 B = 0.004048 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.051209 B = 6915.304332 C = 7310.813717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.072 0.928 9 S -0.135 6.135 10 C -0.108 4.108 11 C -0.137 4.137 12 C 0.045 3.955 13 N -0.517 5.517 14 C 0.052 3.948 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.107 4.107 18 C 0.092 3.908 19 H 0.082 0.918 20 C 0.484 3.516 21 O -0.498 6.498 22 O -0.515 6.515 23 H 0.267 0.733 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.755 -19.239 -1.385 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.664 4.664 8 H 0.090 0.910 9 S 0.093 5.907 10 C -0.257 4.257 11 C -0.177 4.177 12 C -0.084 4.084 13 N -0.242 5.242 14 C -0.075 4.075 15 C -0.157 4.157 16 C -0.157 4.157 17 C -0.145 4.145 18 C -0.018 4.018 19 H 0.099 0.901 20 C 0.324 3.676 21 O -0.384 6.384 22 O -0.327 6.327 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 0.977 -19.768 -1.071 19.821 hybrid contribution 1.564 2.154 -0.530 2.715 sum 2.541 -17.614 -1.601 17.868 Atomic orbital electron populations 1.70028 1.05929 1.27316 1.47313 1.25013 0.95080 0.99086 0.94564 0.86163 0.79465 0.81508 0.78391 1.20256 1.20733 1.19659 1.22691 0.94519 0.90739 1.58468 0.90954 1.84590 1.09667 0.99567 1.96866 1.23161 1.02792 0.96892 1.02902 1.21985 0.98586 0.94595 1.02567 1.22506 0.97071 0.84671 1.04110 1.62081 1.36283 1.25208 1.00597 1.22180 0.97598 0.96257 0.91453 1.21639 0.99998 0.96098 0.97972 1.21573 0.98431 1.01678 0.93980 1.21569 1.01196 0.92616 0.99090 1.21222 0.94943 0.98969 0.86655 0.90069 1.23231 0.86768 0.72913 0.84643 1.90704 1.15750 1.48559 1.83364 1.84539 1.45868 1.78167 1.24108 0.92316 0.91985 0.92243 0.91762 0.91219 0.89935 0.89868 0.93627 0.89863 0.91135 0.90959 0.91554 0.91133 0.90371 0.90601 0.73057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.96 9.50 30.94 0.29 -14.67 16 8 H 0.07 2.04 7.80 -52.48 -0.41 1.63 16 9 S -0.14 -3.56 21.44 -107.50 -2.30 -5.87 16 10 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 11 C -0.14 -2.27 4.52 -26.73 -0.12 -2.40 16 12 C 0.05 0.66 4.87 -3.82 -0.02 0.64 16 13 N -0.52 -6.59 4.46 -228.02 -1.02 -7.61 16 14 C 0.05 0.56 5.03 -3.84 -0.02 0.54 16 15 C -0.12 -1.02 6.09 -26.65 -0.16 -1.18 16 16 C -0.12 -0.96 6.00 -26.61 -0.16 -1.12 16 17 C -0.11 -1.01 5.35 -26.66 -0.14 -1.15 16 18 C 0.09 1.11 1.75 -68.83 -0.12 0.99 16 19 H 0.08 1.01 6.62 -51.93 -0.34 0.67 16 20 C 0.48 6.45 6.39 36.01 0.23 6.69 16 21 O -0.50 -7.95 15.93 -18.75 -0.30 -8.25 16 22 O -0.52 -5.81 13.42 -39.24 -0.53 -6.34 16 23 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 25 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 26 H 0.06 1.09 6.46 -51.93 -0.34 0.76 16 27 H 0.07 1.14 6.66 -51.93 -0.35 0.79 16 28 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 29 H 0.08 1.34 6.02 -51.93 -0.31 1.03 16 30 H 0.05 0.51 6.74 -51.93 -0.35 0.16 16 31 H 0.08 0.85 8.07 -51.93 -0.42 0.44 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.41 2.96 9.10 45.56 0.41 3.37 16 LS Contribution 319.02 15.07 4.81 4.81 Total: -1.00 -33.57 319.02 -8.77 -42.34 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.04 Total: 1.36 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -0.11 Total: -11.73 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: -0.28 Total: -32.99 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.83 Total: -14.59 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -2.30 Total: -5.87 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.57 -8.77 -42.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821324541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.707 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds