Wall clock time and date at job start Mon Mar 30 2020 01:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86797 * 120.00147 * 2 1 4 4 H 1.48502 * 109.46908 * 270.00088 * 3 2 1 5 5 H 1.48497 * 109.47347 * 29.99951 * 3 2 1 6 6 H 1.48500 * 109.46890 * 150.00128 * 3 2 1 7 7 C 1.38799 * 119.99344 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99585 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00466 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99868 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47031 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47149 * 180.02562 * 11 10 9 13 13 N 1.46902 * 109.47044 * 179.97438 * 12 11 10 14 14 C 1.46839 * 110.99987 * 294.66854 * 13 12 11 15 15 C 1.53041 * 109.52401 * 185.84099 * 14 13 12 16 16 C 1.53125 * 109.27386 * 300.81871 * 15 14 13 17 17 C 1.53116 * 109.15943 * 57.65246 * 16 15 14 18 18 C 1.46927 * 110.98508 * 58.89645 * 13 12 11 19 19 H 1.09000 * 109.45383 * 294.15982 * 18 13 12 20 20 C 1.50705 * 109.52158 * 54.15582 * 18 13 12 21 21 O 1.20826 * 119.99714 * 28.97923 * 20 18 13 22 22 O 1.34222 * 120.00341 * 208.98748 * 20 18 13 23 23 H 0.97002 * 119.99384 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47314 * 60.00155 * 10 9 7 25 25 H 1.09011 * 109.47225 * 299.99675 * 10 9 7 26 26 H 1.09002 * 109.47196 * 59.99776 * 11 10 9 27 27 H 1.08998 * 109.46623 * 299.99444 * 11 10 9 28 28 H 1.09002 * 109.47311 * 59.99777 * 12 11 10 29 29 H 1.09005 * 109.46707 * 299.99565 * 12 11 10 30 30 H 1.08995 * 109.46734 * 65.82362 * 14 13 12 31 31 H 1.09000 * 109.46435 * 305.85197 * 14 13 12 32 32 H 1.09000 * 109.50538 * 180.88012 * 15 14 13 33 33 H 1.09002 * 109.53604 * 60.77479 * 15 14 13 34 34 H 1.08997 * 109.52288 * 297.74744 * 16 15 14 35 35 H 1.09003 * 109.57048 * 177.59064 * 16 15 14 36 36 H 1.09000 * 109.50350 * 62.28966 * 17 16 15 37 37 H 1.09003 * 109.50179 * 182.36231 * 17 16 15 38 38 H 0.96696 * 117.00709 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9791 -5.3244 -0.0012 12 6 3.1511 -6.3078 -0.0005 13 7 2.6358 -7.6836 -0.0005 14 6 1.9150 -7.9755 1.2450 15 6 1.5201 -9.4538 1.2729 16 6 0.6334 -9.7631 0.0635 17 6 1.3895 -9.4048 -1.2188 18 6 1.7881 -7.9280 -1.1755 19 1 0.8915 -7.3116 -1.1107 20 6 2.5495 -7.5764 -2.4276 21 8 3.7536 -7.6733 -2.4498 22 8 1.8899 -7.1554 -3.5182 23 1 -0.4849 0.8401 -0.0004 24 1 3.1243 -3.7315 0.8895 25 1 3.1243 -3.7314 -0.8906 26 1 1.3707 -5.4841 -0.8914 27 1 1.3703 -5.4847 0.8886 28 1 3.7591 -6.1480 0.8899 29 1 3.7602 -6.1476 -0.8902 30 1 1.0178 -7.3589 1.2984 31 1 2.5581 -7.7553 2.0970 32 1 0.9714 -9.6667 2.1904 33 1 2.4173 -10.0715 1.2337 34 1 -0.2821 -9.1745 0.1230 35 1 0.3843 -10.8243 0.0552 36 1 2.2850 -10.0213 -1.2975 37 1 0.7478 -9.5834 -2.0817 38 1 2.4212 -6.9413 -4.2973 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821324541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:25 Heat of formation + Delta-G solvation = -129.976788 kcal Electronic energy + Delta-G solvation = -19337.068630 eV Core-core repulsion = 16303.880980 eV Total energy + Delta-G solvation = -3033.187650 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.83674 -39.67981 -37.09646 -36.03510 -34.63331 -32.72898 -32.34615 -28.00288 -27.42908 -25.75273 -24.35811 -22.99817 -22.17716 -20.27606 -19.56043 -19.14308 -17.79682 -17.14804 -16.92189 -16.81135 -16.09618 -15.96266 -15.82527 -15.23048 -14.84031 -14.69775 -14.30528 -13.99419 -13.78539 -13.59689 -13.29438 -13.08655 -12.90691 -12.66215 -12.61433 -12.52710 -12.42438 -12.10831 -11.72911 -11.57651 -11.52866 -11.33809 -11.17118 -11.14258 -10.41239 -9.35179 -8.70620 -8.40254 -6.17084 1.11760 1.29493 1.37503 1.46613 1.70292 1.93236 2.25108 2.81378 2.94121 3.27262 3.72060 3.78837 3.90080 3.97593 4.05466 4.15624 4.17629 4.25204 4.39898 4.42557 4.52689 4.64220 4.77675 4.81285 4.83459 4.88358 5.02947 5.06024 5.17686 5.19646 5.24342 5.36856 5.47106 5.55973 5.84855 5.98360 6.15236 6.96749 7.02080 8.69175 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027203 B = 0.004048 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.051209 B = 6915.304332 C = 7310.813717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.018 3.982 3 Si 0.993 3.007 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.071 0.929 9 S -0.192 6.192 10 C -0.085 4.085 11 C -0.121 4.121 12 C 0.057 3.943 13 N -0.519 5.519 14 C 0.047 3.953 15 C -0.115 4.115 16 C -0.117 4.117 17 C -0.103 4.103 18 C 0.087 3.913 19 H 0.077 0.923 20 C 0.484 3.516 21 O -0.529 6.529 22 O -0.514 6.514 23 H 0.272 0.728 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.072 -19.965 -1.066 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.689 4.689 8 H 0.089 0.911 9 S 0.037 5.963 10 C -0.235 4.235 11 C -0.162 4.162 12 C -0.073 4.073 13 N -0.244 5.244 14 C -0.079 4.079 15 C -0.152 4.152 16 C -0.154 4.154 17 C -0.140 4.140 18 C -0.023 4.023 19 H 0.095 0.905 20 C 0.326 3.674 21 O -0.418 6.418 22 O -0.328 6.328 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 1.279 -20.510 -0.767 20.564 hybrid contribution 1.453 2.308 -0.669 2.808 sum 2.732 -18.202 -1.436 18.461 Atomic orbital electron populations 1.70149 1.07643 1.28611 1.47863 1.26046 0.96029 1.03026 0.93618 0.85027 0.78200 0.76398 0.78867 1.19284 1.19688 1.18805 1.23039 0.94688 0.92090 1.59111 0.91126 1.84552 1.13723 1.01026 1.97034 1.23097 1.00282 0.97380 1.02736 1.21877 0.99364 0.92390 1.02520 1.22314 0.95940 0.85323 1.03703 1.62131 1.37191 1.23331 1.01750 1.22324 0.97181 0.97899 0.90526 1.21635 1.00313 0.94178 0.99119 1.21596 0.98007 1.03003 0.92795 1.21603 1.01421 0.90390 1.00626 1.21395 0.94234 1.00767 0.85883 0.90540 1.23533 0.86430 0.72125 0.85287 1.90689 1.17005 1.50114 1.83996 1.84511 1.46100 1.77605 1.24543 0.91879 0.91648 0.92727 0.92305 0.90752 0.89154 0.91450 0.94235 0.89441 0.89317 0.91016 0.91452 0.89030 0.90838 0.89266 0.71146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.85 13.22 21.65 0.29 -54.56 16 2 C 0.02 1.03 5.49 84.86 0.47 1.49 16 3 Si 0.99 44.22 29.55 68.60 2.03 46.25 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.54 -31.73 9.50 67.95 0.65 -31.09 16 8 H 0.07 4.01 7.80 -2.91 -0.02 3.99 16 9 S -0.19 -10.31 21.44 -56.49 -1.21 -11.52 16 10 C -0.09 -3.54 5.67 71.98 0.41 -3.13 16 11 C -0.12 -3.98 4.52 30.60 0.14 -3.84 16 12 C 0.06 1.62 4.87 86.30 0.42 2.04 16 13 N -0.52 -12.69 4.46 -875.31 -3.90 -16.60 16 14 C 0.05 0.94 5.03 86.33 0.43 1.37 16 15 C -0.11 -1.68 6.09 30.65 0.19 -1.49 16 16 C -0.12 -1.58 6.00 30.67 0.18 -1.39 16 17 C -0.10 -1.75 5.35 30.64 0.16 -1.58 16 18 C 0.09 2.01 1.75 44.18 0.08 2.09 16 19 H 0.08 1.85 6.62 -2.39 -0.02 1.83 16 20 C 0.48 12.66 6.39 71.24 0.46 13.12 16 21 O -0.53 -16.83 15.93 21.96 0.35 -16.48 16 22 O -0.51 -11.22 13.42 -51.34 -0.69 -11.91 16 23 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 24 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 25 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.06 2.00 6.46 -2.39 -0.02 1.98 16 27 H 0.07 2.38 6.66 -2.39 -0.02 2.36 16 28 H 0.09 2.42 8.07 -2.39 -0.02 2.40 16 29 H 0.07 2.16 6.02 -2.38 -0.01 2.15 16 30 H 0.04 0.84 6.74 -2.39 -0.02 0.82 16 31 H 0.09 1.65 8.07 -2.39 -0.02 1.63 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.43 5.84 9.10 -74.06 -0.67 5.17 16 Total: -1.00 -72.16 319.02 0.82 -71.33 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.38 Total: 15.90 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 3.58 Total: -22.41 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -3.62 Total: -71.16 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.34 Total: -28.39 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: -10.31 SS G_CDS: -1.21 Total: -11.52 kcal Total: -72.16 0.82 -71.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821324541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.644 kcal (2) G-P(sol) polarization free energy of solvation -72.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds