Wall clock time and date at job start Mon Mar 30 2020 01:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 119.99689 * 2 1 4 4 H 1.48493 * 109.47659 * 269.99944 * 3 2 1 5 5 H 1.48505 * 109.47026 * 30.00220 * 3 2 1 6 6 H 1.48507 * 109.46961 * 149.99886 * 3 2 1 7 7 C 1.39929 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99619 * 196.79192 * 7 2 1 9 9 C 1.41405 * 120.00367 * 16.78818 * 7 2 1 10 10 C 1.40773 * 120.20872 * 205.14859 * 9 7 2 11 11 C 1.37652 * 119.88758 * 180.02562 * 10 9 7 12 12 C 1.38527 * 120.32546 * 359.71904 * 11 10 9 13 13 C 1.39267 * 120.42511 * 0.55575 * 12 11 10 14 14 N 1.39833 * 119.95133 * 179.71995 * 13 12 11 15 15 C 1.34779 * 119.99940 * 325.53539 * 14 13 12 16 16 O 1.21601 * 120.00070 * 354.88997 * 15 14 13 17 17 C 1.47455 * 119.99805 * 174.89454 * 15 14 13 18 18 C 1.32431 * 118.47720 * 180.02562 * 17 15 14 19 19 C 1.50459 * 122.28174 * 180.36351 * 18 17 15 20 20 C 1.53231 * 109.45560 * 342.45074 * 19 18 17 21 21 C 1.53473 * 108.27785 * 47.14539 * 20 19 18 22 22 O 1.35492 * 118.48131 * 359.97438 * 17 15 14 23 23 C 1.38309 * 120.10132 * 359.44822 * 13 12 11 24 24 H 0.97006 * 120.00446 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.05947 * 359.97438 * 10 9 7 26 26 H 1.08007 * 119.83515 * 180.02562 * 11 10 9 27 27 H 1.07994 * 119.78453 * 180.27507 * 12 11 10 28 28 H 0.97003 * 120.00389 * 145.53456 * 14 13 12 29 29 H 1.08001 * 118.85847 * 0.38065 * 18 17 15 30 30 H 1.09009 * 109.47266 * 222.45906 * 19 18 17 31 31 H 1.09001 * 109.47494 * 102.44912 * 19 18 17 32 32 H 1.08998 * 109.70907 * 166.85373 * 20 19 18 33 33 H 1.09001 * 109.71081 * 287.43662 * 20 19 18 34 34 H 1.09005 * 109.69234 * 56.76412 * 21 20 19 35 35 H 1.08995 * 109.69353 * 177.34772 * 21 20 19 36 36 H 1.08001 * 120.16444 * 180.25412 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0466 -1.4000 5 1 1.4396 2.6527 0.7001 6 1 3.5398 1.4403 0.7001 7 6 2.0079 -1.2118 -0.0005 8 1 3.0534 -1.2318 0.2697 9 6 1.3462 -2.4102 -0.3548 10 6 1.8188 -3.6477 0.1215 11 6 1.1699 -4.8103 -0.2279 12 6 0.0497 -4.7686 -1.0417 13 6 -0.4260 -3.5522 -1.5251 14 7 -1.5541 -3.5221 -2.3507 15 6 -1.7784 -4.5255 -3.2221 16 8 -0.9541 -5.4092 -3.3571 17 6 -3.0233 -4.5516 -4.0119 18 6 -3.2130 -5.5519 -4.8589 19 6 -4.4474 -5.6590 -5.7124 20 6 -5.5441 -4.7552 -5.1395 21 6 -4.9278 -3.3823 -4.8383 22 8 -3.9208 -3.5517 -3.8367 23 6 0.2125 -2.3733 -1.1851 24 1 -0.4851 0.8401 -0.0004 25 1 2.6896 -3.6851 0.7593 26 1 1.5330 -5.7593 0.1384 27 1 -0.4553 -5.6857 -1.3068 28 1 -2.1754 -2.7791 -2.2963 29 1 -2.4554 -6.3173 -4.9395 30 1 -4.7952 -6.6921 -5.7203 31 1 -4.2137 -5.3465 -6.7302 32 1 -6.3478 -4.6456 -5.8676 33 1 -5.9372 -5.1911 -4.2210 34 1 -4.4795 -2.9742 -5.7442 35 1 -5.6999 -2.7053 -4.4729 36 1 -0.1580 -1.4290 -1.5561 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837072486.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:36 Heat of formation + Delta-G solvation = -44.197409 kcal Electronic energy + Delta-G solvation = -20195.241863 eV Core-core repulsion = 17030.329935 eV Total energy + Delta-G solvation = -3164.911928 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.52130 -39.06742 -37.14222 -34.54960 -33.91301 -33.20388 -31.65740 -29.52777 -28.44718 -25.96680 -25.22546 -24.21271 -21.80518 -21.15665 -19.80644 -18.90554 -18.01257 -17.38215 -16.33412 -15.75037 -15.60750 -14.89726 -14.74933 -14.49514 -14.35268 -14.11595 -13.61591 -13.18969 -13.08320 -12.75152 -12.69810 -12.31359 -11.62587 -11.37498 -11.21096 -11.12891 -10.99406 -10.83001 -10.70985 -10.60649 -10.08074 -9.72388 -9.52574 -9.21527 -8.96148 -8.52406 -7.36775 -6.99821 -6.67543 -4.35557 1.47254 2.76188 2.92183 3.08543 3.09197 3.12120 3.24518 3.66165 3.74955 3.94972 4.48662 4.58690 4.66716 4.72685 5.04667 5.14546 5.26505 5.38084 5.50193 5.63980 5.69321 5.83091 6.01853 6.26630 6.29108 6.64517 6.70220 6.87591 7.05070 7.07679 7.24180 7.33850 7.61391 7.73310 7.94163 8.04517 8.16546 8.34305 8.54841 8.73788 8.90524 8.97034 10.21060 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023275 B = 0.004516 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.711271 B = 6198.805759 C = 7178.368064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.464 4.464 8 H 0.079 0.921 9 C 0.120 3.880 10 C -0.227 4.227 11 C -0.086 4.086 12 C -0.227 4.227 13 C 0.142 3.858 14 N -0.647 5.647 15 C 0.559 3.441 16 O -0.515 6.515 17 C 0.039 3.961 18 C -0.199 4.199 19 C -0.085 4.085 20 C -0.163 4.163 21 C 0.061 3.939 22 O -0.316 6.316 23 C -0.179 4.179 24 H 0.279 0.721 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.410 0.590 29 H 0.139 0.861 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.106 -3.645 -9.260 14.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.494 4.494 8 H 0.097 0.903 9 C 0.117 3.883 10 C -0.247 4.247 11 C -0.104 4.104 12 C -0.248 4.248 13 C 0.050 3.950 14 N -0.290 5.290 15 C 0.345 3.655 16 O -0.393 6.393 17 C -0.008 4.008 18 C -0.220 4.220 19 C -0.122 4.122 20 C -0.201 4.201 21 C -0.014 4.014 22 O -0.231 6.231 23 C -0.200 4.200 24 H 0.090 0.910 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.246 0.754 29 H 0.157 0.843 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.125 0.875 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.759 -3.963 -9.169 14.681 hybrid contribution -0.150 1.049 -0.185 1.076 sum -10.909 -2.914 -9.354 14.663 Atomic orbital electron populations 1.69815 1.07525 1.29038 1.36059 1.25877 0.94736 1.01211 0.92215 0.86318 0.80508 0.80651 0.79254 1.19361 1.20377 1.18633 1.19546 0.97812 0.90988 1.41022 0.90312 1.17362 0.90551 0.92203 0.88166 1.21049 1.03834 0.92872 1.06897 1.20415 0.95563 0.96652 0.97813 1.20302 1.02073 0.95493 1.06920 1.17632 0.88359 0.95215 0.93763 1.43386 1.25423 1.23692 1.36452 1.17878 0.84825 0.82920 0.79871 1.90828 1.44543 1.37650 1.66272 1.20433 0.90205 0.90575 0.99620 1.23055 1.00434 0.98931 0.99572 1.20466 0.92489 1.00789 0.98431 1.22273 0.98644 0.96465 1.02677 1.23009 0.89776 0.97180 0.91451 1.85948 1.40232 1.49562 1.47334 1.21096 0.99839 0.95334 1.03777 0.90998 0.88792 0.88953 0.88100 0.75445 0.84337 0.89841 0.90313 0.89952 0.90381 0.91755 0.87508 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.37 10.94 55.55 0.61 -19.77 16 2 C 0.08 1.92 5.16 -17.35 -0.09 1.83 16 3 Si 0.91 18.67 29.59 -169.99 -5.03 13.64 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.36 9.05 -37.74 -0.34 -12.70 16 8 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 9 C 0.12 3.25 5.57 -106.85 -0.59 2.65 16 10 C -0.23 -5.72 9.79 -38.84 -0.38 -6.10 16 11 C -0.09 -2.04 10.02 -39.69 -0.40 -2.44 16 12 C -0.23 -5.57 8.66 -39.09 -0.34 -5.91 16 13 C 0.14 3.47 6.24 -83.80 -0.52 2.95 16 14 N -0.65 -13.44 5.32 -10.88 -0.06 -13.49 16 15 C 0.56 11.05 7.49 -12.50 -0.09 10.96 16 16 O -0.52 -11.60 13.78 5.28 0.07 -11.53 16 17 C 0.04 0.62 6.57 -37.75 -0.25 0.37 16 18 C -0.20 -2.66 9.54 -36.35 -0.35 -3.01 16 19 C -0.08 -0.78 6.22 -27.88 -0.17 -0.96 16 20 C -0.16 -1.34 6.23 -26.37 -0.16 -1.50 16 21 C 0.06 0.58 7.08 37.40 0.26 0.85 16 22 O -0.32 -4.41 9.58 -18.17 -0.17 -4.58 16 23 C -0.18 -4.69 8.60 -38.67 -0.33 -5.03 16 24 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 25 H 0.09 2.21 8.06 -52.49 -0.42 1.78 16 26 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 27 H 0.10 2.44 6.47 -52.49 -0.34 2.10 16 28 H 0.41 7.66 8.14 -40.82 -0.33 7.33 16 29 H 0.14 1.98 7.28 -52.49 -0.38 1.59 16 30 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.12 3.26 6.17 -52.49 -0.32 2.94 16 LS Contribution 305.97 15.07 4.61 4.61 Total: -1.00 -30.06 305.97 -8.04 -38.10 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -4.31 Total: 11.06 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -3.76 Total: -18.04 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.55 Total: -33.26 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.10 Total: -16.11 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.06 -8.04 -38.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837072486.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.094 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds