Wall clock time and date at job start Mon Mar 30 2020 01:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 119.99689 * 2 1 4 4 H 1.48493 * 109.47659 * 269.99944 * 3 2 1 5 5 H 1.48505 * 109.47026 * 30.00220 * 3 2 1 6 6 H 1.48507 * 109.46961 * 149.99886 * 3 2 1 7 7 C 1.39929 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99619 * 196.79192 * 7 2 1 9 9 C 1.41405 * 120.00367 * 16.78818 * 7 2 1 10 10 C 1.40773 * 120.20872 * 205.14859 * 9 7 2 11 11 C 1.37652 * 119.88758 * 180.02562 * 10 9 7 12 12 C 1.38527 * 120.32546 * 359.71904 * 11 10 9 13 13 C 1.39267 * 120.42511 * 0.55575 * 12 11 10 14 14 N 1.39833 * 119.95133 * 179.71995 * 13 12 11 15 15 C 1.34779 * 119.99940 * 325.53539 * 14 13 12 16 16 O 1.21601 * 120.00070 * 354.88997 * 15 14 13 17 17 C 1.47455 * 119.99805 * 174.89454 * 15 14 13 18 18 C 1.32431 * 118.47720 * 180.02562 * 17 15 14 19 19 C 1.50459 * 122.28174 * 180.36351 * 18 17 15 20 20 C 1.53231 * 109.45560 * 342.45074 * 19 18 17 21 21 C 1.53473 * 108.27785 * 47.14539 * 20 19 18 22 22 O 1.35492 * 118.48131 * 359.97438 * 17 15 14 23 23 C 1.38309 * 120.10132 * 359.44822 * 13 12 11 24 24 H 0.97006 * 120.00446 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.05947 * 359.97438 * 10 9 7 26 26 H 1.08007 * 119.83515 * 180.02562 * 11 10 9 27 27 H 1.07994 * 119.78453 * 180.27507 * 12 11 10 28 28 H 0.97003 * 120.00389 * 145.53456 * 14 13 12 29 29 H 1.08001 * 118.85847 * 0.38065 * 18 17 15 30 30 H 1.09009 * 109.47266 * 222.45906 * 19 18 17 31 31 H 1.09001 * 109.47494 * 102.44912 * 19 18 17 32 32 H 1.08998 * 109.70907 * 166.85373 * 20 19 18 33 33 H 1.09001 * 109.71081 * 287.43662 * 20 19 18 34 34 H 1.09005 * 109.69234 * 56.76412 * 21 20 19 35 35 H 1.08995 * 109.69353 * 177.34772 * 21 20 19 36 36 H 1.08001 * 120.16444 * 180.25412 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0466 -1.4000 5 1 1.4396 2.6527 0.7001 6 1 3.5398 1.4403 0.7001 7 6 2.0079 -1.2118 -0.0005 8 1 3.0534 -1.2318 0.2697 9 6 1.3462 -2.4102 -0.3548 10 6 1.8188 -3.6477 0.1215 11 6 1.1699 -4.8103 -0.2279 12 6 0.0497 -4.7686 -1.0417 13 6 -0.4260 -3.5522 -1.5251 14 7 -1.5541 -3.5221 -2.3507 15 6 -1.7784 -4.5255 -3.2221 16 8 -0.9541 -5.4092 -3.3571 17 6 -3.0233 -4.5516 -4.0119 18 6 -3.2130 -5.5519 -4.8589 19 6 -4.4474 -5.6590 -5.7124 20 6 -5.5441 -4.7552 -5.1395 21 6 -4.9278 -3.3823 -4.8383 22 8 -3.9208 -3.5517 -3.8367 23 6 0.2125 -2.3733 -1.1851 24 1 -0.4851 0.8401 -0.0004 25 1 2.6896 -3.6851 0.7593 26 1 1.5330 -5.7593 0.1384 27 1 -0.4553 -5.6857 -1.3068 28 1 -2.1754 -2.7791 -2.2963 29 1 -2.4554 -6.3173 -4.9395 30 1 -4.7952 -6.6921 -5.7203 31 1 -4.2137 -5.3465 -6.7302 32 1 -6.3478 -4.6456 -5.8676 33 1 -5.9372 -5.1911 -4.2210 34 1 -4.4795 -2.9742 -5.7442 35 1 -5.6999 -2.7053 -4.4729 36 1 -0.1580 -1.4290 -1.5561 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837072486.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:36 Heat of formation + Delta-G solvation = -62.140729 kcal Electronic energy + Delta-G solvation = -20196.019944 eV Core-core repulsion = 17030.329935 eV Total energy + Delta-G solvation = -3165.690009 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79433 -40.44892 -38.95737 -36.17111 -35.25244 -34.75293 -32.72326 -31.47877 -30.23346 -27.23473 -26.86113 -25.27684 -23.28184 -22.99704 -21.54098 -19.87561 -19.44056 -19.22452 -17.59421 -17.36928 -16.79255 -16.56735 -16.47769 -16.00529 -15.67098 -15.00252 -14.88751 -14.84356 -14.45832 -14.21266 -14.00581 -13.64588 -13.46321 -13.10732 -12.84771 -12.62309 -12.38433 -12.11116 -11.89583 -11.70559 -11.60028 -11.58787 -11.26910 -11.04252 -10.76904 -9.59539 -9.36065 -8.88770 -8.56531 -6.37082 0.17369 0.94916 1.05341 1.40322 1.53146 1.53419 1.93126 2.13320 2.22397 2.40065 2.75251 3.63658 3.71028 3.78823 3.95733 4.19928 4.33510 4.43075 4.45225 4.62075 4.68564 4.75000 4.82504 4.94761 5.05469 5.12267 5.15063 5.17988 5.22845 5.25781 5.33297 5.72301 5.79720 5.98619 6.06616 6.17477 6.36104 6.58936 6.68794 6.92100 6.94455 7.11002 8.34002 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023275 B = 0.004516 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.711271 B = 6198.805759 C = 7178.368064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.498 4.498 8 H 0.079 0.921 9 C 0.093 3.907 10 C -0.245 4.245 11 C -0.082 4.082 12 C -0.242 4.242 13 C 0.145 3.855 14 N -0.648 5.648 15 C 0.555 3.445 16 O -0.551 6.551 17 C 0.018 3.982 18 C -0.172 4.172 19 C -0.086 4.086 20 C -0.157 4.157 21 C 0.049 3.951 22 O -0.334 6.334 23 C -0.202 4.202 24 H 0.289 0.711 25 H 0.105 0.895 26 H 0.123 0.877 27 H 0.103 0.897 28 H 0.417 0.583 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.129 0.871 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.533 -3.280 -10.542 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.527 4.527 8 H 0.097 0.903 9 C 0.090 3.910 10 C -0.265 4.265 11 C -0.100 4.100 12 C -0.263 4.263 13 C 0.052 3.948 14 N -0.291 5.291 15 C 0.344 3.656 16 O -0.431 6.431 17 C -0.030 4.030 18 C -0.193 4.193 19 C -0.122 4.122 20 C -0.195 4.195 21 C -0.025 4.025 22 O -0.250 6.250 23 C -0.224 4.224 24 H 0.100 0.900 25 H 0.123 0.877 26 H 0.141 0.859 27 H 0.121 0.879 28 H 0.255 0.745 29 H 0.144 0.856 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.147 0.853 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.225 -3.606 -10.462 16.490 hybrid contribution 0.198 0.855 0.144 0.889 sum -12.027 -2.752 -10.318 16.084 Atomic orbital electron populations 1.69859 1.08916 1.30599 1.35480 1.26742 0.95551 1.04404 0.91091 0.85182 0.79105 0.75858 0.79425 1.18862 1.19072 1.18232 1.19821 0.98115 0.92115 1.42650 0.90309 1.17767 0.91223 0.93300 0.88679 1.21245 1.04668 0.92895 1.07685 1.20743 0.94857 0.97623 0.96810 1.20480 1.02726 0.95558 1.07497 1.17742 0.88926 0.94723 0.93425 1.43379 1.24630 1.24612 1.36487 1.18564 0.85996 0.81672 0.79379 1.90786 1.46247 1.38621 1.67413 1.19820 0.89730 0.92667 1.00772 1.23432 1.01347 0.96729 0.97819 1.20657 0.90694 1.02492 0.98394 1.22286 0.98920 0.94991 1.03268 1.23412 0.89261 0.98752 0.91093 1.85906 1.40831 1.49068 1.49148 1.21034 1.00749 0.95473 1.05099 0.90024 0.87665 0.85872 0.87933 0.74544 0.85617 0.87797 0.88144 0.86560 0.91059 0.90896 0.85322 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.57 10.94 21.82 0.24 -42.33 16 2 C 0.04 1.87 5.16 85.25 0.44 2.31 16 3 Si 0.98 38.11 29.59 68.60 2.03 40.14 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 5 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 6 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 7 C -0.50 -27.18 9.05 23.46 0.21 -26.96 16 8 H 0.08 4.14 7.90 -2.91 -0.02 4.12 16 9 C 0.09 5.21 5.57 -21.31 -0.12 5.09 16 10 C -0.25 -12.64 9.79 22.75 0.22 -12.42 16 11 C -0.08 -3.94 10.02 22.20 0.22 -3.72 16 12 C -0.24 -12.12 8.66 22.59 0.20 -11.93 16 13 C 0.14 7.32 6.24 38.13 0.24 7.56 16 14 N -0.65 -27.81 5.32 -306.58 -1.63 -29.44 16 15 C 0.55 22.46 7.49 86.67 0.65 23.11 16 16 O -0.55 -25.45 13.78 -4.04 -0.06 -25.51 16 17 C 0.02 0.54 6.57 23.58 0.15 0.70 16 18 C -0.17 -4.35 9.54 24.49 0.23 -4.12 16 19 C -0.09 -1.29 6.22 29.85 0.19 -1.10 16 20 C -0.16 -2.01 6.23 30.83 0.19 -1.82 16 21 C 0.05 0.80 7.08 72.14 0.51 1.31 16 22 O -0.33 -9.02 9.58 -87.93 -0.84 -9.87 16 23 C -0.20 -11.00 8.60 22.86 0.20 -10.81 16 24 H 0.29 13.42 8.30 -92.70 -0.77 12.65 16 25 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 26 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 27 H 0.10 5.06 6.47 -2.91 -0.02 5.04 16 28 H 0.42 16.20 8.14 -92.71 -0.76 15.45 16 29 H 0.13 3.51 7.28 -2.91 -0.02 3.49 16 30 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.11 6.23 6.17 -2.91 -0.02 6.21 16 Total: -1.00 -67.11 305.97 3.63 -63.48 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: 0.35 Total: 36.31 kcal Atomic # 6 Polarization: -36.32 SS G_CDS: 3.53 Total: -32.79 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -1.39 Total: -71.77 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.90 Total: -35.37 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -67.11 3.63 -63.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837072486.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.338 kcal (2) G-P(sol) polarization free energy of solvation -67.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds