Wall clock time and date at job start Mon Mar 30 2020 01:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86794 * 120.00021 * 2 1 4 4 H 1.48497 * 109.47083 * 269.99813 * 3 2 1 5 5 H 1.48500 * 109.47147 * 29.99818 * 3 2 1 6 6 H 1.48503 * 109.47035 * 149.99943 * 3 2 1 7 7 C 1.39929 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00072 * 196.78845 * 7 2 1 9 9 C 1.41415 * 120.00035 * 16.78339 * 7 2 1 10 10 C 1.40778 * 120.20488 * 25.20175 * 9 7 2 11 11 C 1.37642 * 119.87950 * 179.97438 * 10 9 7 12 12 C 1.38529 * 120.32627 * 359.73832 * 11 10 9 13 13 C 1.39250 * 120.42424 * 0.51565 * 12 11 10 14 14 N 1.39942 * 119.94778 * 179.76206 * 13 12 11 15 15 C 1.34781 * 119.99889 * 325.53970 * 14 13 12 16 16 O 1.21288 * 119.99965 * 354.88999 * 15 14 13 17 17 C 1.50696 * 120.00083 * 174.89185 * 15 14 13 18 18 H 1.08995 * 109.74181 * 304.39544 * 17 15 14 19 19 C 1.53506 * 109.70351 * 64.99997 * 17 15 14 20 20 C 1.53259 * 108.19526 * 182.11207 * 19 17 15 21 21 C 1.50447 * 109.43677 * 313.14910 * 20 19 17 22 22 C 1.30684 * 122.49332 * 17.46639 * 21 20 19 23 23 O 1.35131 * 123.34898 * 359.57782 * 22 21 20 24 24 C 1.38277 * 120.10951 * 359.48763 * 13 12 11 25 25 H 0.96999 * 119.99577 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.06290 * 359.94463 * 10 9 7 27 27 H 1.08001 * 119.83894 * 179.97438 * 11 10 9 28 28 H 1.08004 * 119.79115 * 180.26023 * 12 11 10 29 29 H 0.96992 * 120.00114 * 145.53622 * 14 13 12 30 30 H 1.08995 * 109.73025 * 62.42161 * 19 17 15 31 31 H 1.08998 * 109.72816 * 301.79411 * 19 17 15 32 32 H 1.09002 * 109.47812 * 73.13751 * 20 19 17 33 33 H 1.08996 * 109.47990 * 193.15798 * 20 19 17 34 34 H 1.07999 * 118.75318 * 197.47540 * 21 20 19 35 35 H 1.08008 * 118.32665 * 179.60946 * 22 21 20 36 36 H 1.07993 * 120.16637 * 180.27623 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0463 -1.4000 5 1 1.4398 2.6526 0.7000 6 1 3.5399 1.4401 0.7001 7 6 2.0080 -1.2118 -0.0005 8 1 3.0534 -1.2319 0.2696 9 6 1.3461 -2.4103 -0.3547 10 6 0.2111 -2.3732 -1.1867 11 6 -0.4277 -3.5438 -1.5277 12 6 0.0439 -4.7597 -1.0605 13 6 1.1623 -4.8112 -0.2325 14 7 1.6272 -6.0445 0.2378 15 6 0.7532 -7.0309 0.5203 16 8 -0.4396 -6.8209 0.4561 17 6 1.2581 -8.3945 0.9161 18 1 1.9299 -8.7758 0.1471 19 6 2.0031 -8.3020 2.2550 20 6 2.5462 -9.6936 2.5976 21 6 1.4632 -10.7178 2.3934 22 6 0.3924 -10.4755 1.6846 23 8 0.1540 -9.2906 1.0802 24 6 1.8177 -3.6461 0.1213 25 1 -0.4849 0.8401 -0.0004 26 1 -0.1581 -1.4281 -1.5565 27 1 -1.2986 -3.5146 -2.1657 28 1 -0.4615 -5.6733 -1.3368 29 1 2.5784 -6.1895 0.3604 30 1 1.3176 -7.9722 3.0356 31 1 2.8291 -7.5960 2.1685 32 1 3.3912 -9.9239 1.9487 33 1 2.8713 -9.7110 3.6378 34 1 1.5749 -11.6901 2.8501 35 1 -0.3397 -11.2622 1.5768 36 1 2.6878 -3.6854 0.7597 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837072752.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:01 Heat of formation + Delta-G solvation = -38.966269 kcal Electronic energy + Delta-G solvation = -20079.961102 eV Core-core repulsion = 16915.276013 eV Total energy + Delta-G solvation = -3164.685089 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.67952 -39.10051 -37.10192 -34.60354 -34.04205 -33.12286 -31.79430 -29.84988 -28.38260 -26.12632 -25.23683 -23.91230 -21.83814 -20.97338 -19.88226 -19.07011 -17.85116 -17.47355 -16.49210 -16.09998 -15.45863 -14.97454 -14.88968 -14.78133 -14.39084 -13.99556 -13.45898 -13.19547 -13.09152 -12.84954 -12.70996 -12.24915 -11.72641 -11.53378 -11.22915 -11.19397 -11.13124 -10.91619 -10.78082 -10.45582 -10.17864 -9.63491 -9.39792 -9.21601 -8.94146 -8.58538 -7.48496 -6.96670 -6.73639 -4.37821 2.10638 2.48519 2.80123 2.83346 3.07256 3.10386 3.15184 3.31441 3.84520 3.93801 4.42344 4.58290 4.65839 4.71882 4.88953 5.00998 5.14490 5.39132 5.42638 5.63470 5.66851 5.86552 6.03632 6.27502 6.32288 6.51500 6.69221 6.90850 6.97137 7.02671 7.23823 7.39224 7.56440 7.64235 7.95368 8.01520 8.11290 8.27503 8.52980 8.65826 8.87823 8.95037 10.19993 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.037912 B = 0.003694 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.371978 B = 7578.331406 C = 8088.525598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.077 0.923 9 C 0.122 3.878 10 C -0.166 4.166 11 C -0.095 4.095 12 C -0.227 4.227 13 C 0.153 3.847 14 N -0.662 5.662 15 C 0.511 3.489 16 O -0.498 6.498 17 C 0.075 3.925 18 H 0.097 0.903 19 C -0.152 4.152 20 C -0.078 4.078 21 C -0.290 4.290 22 C 0.060 3.940 23 O -0.296 6.296 24 C -0.243 4.243 25 H 0.281 0.719 26 H 0.120 0.880 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.400 0.600 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.160 0.840 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.883 -14.289 2.770 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.096 0.904 9 C 0.119 3.881 10 C -0.186 4.186 11 C -0.114 4.114 12 C -0.248 4.248 13 C 0.061 3.939 14 N -0.307 5.307 15 C 0.296 3.704 16 O -0.371 6.371 17 C 0.015 3.985 18 H 0.115 0.885 19 C -0.190 4.190 20 C -0.115 4.115 21 C -0.310 4.310 22 C -0.003 4.003 23 O -0.208 6.208 24 C -0.264 4.264 25 H 0.091 0.909 26 H 0.138 0.862 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.234 0.766 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.139 0.861 35 H 0.177 0.823 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.608 -13.943 2.665 14.925 hybrid contribution 1.025 0.498 0.317 1.183 sum 5.632 -13.445 2.982 14.879 Atomic orbital electron populations 1.69838 1.07544 1.29199 1.35294 1.25898 0.94730 1.01275 0.92286 0.86298 0.80403 0.80627 0.79276 1.19290 1.20356 1.18682 1.19520 0.97698 0.90991 1.41278 0.90439 1.17373 0.91038 0.91314 0.88348 1.21391 0.99145 0.96893 1.01131 1.20589 0.98423 0.92749 0.99601 1.20314 1.00965 0.97389 1.06100 1.17398 0.97247 0.82559 0.96646 1.43301 1.09509 1.12490 1.65414 1.19935 0.87082 0.85091 0.78306 1.90765 1.15463 1.81653 1.49206 1.22300 0.88181 0.89318 0.98711 0.88543 1.22248 1.01244 0.98828 0.96672 1.20339 0.96859 0.91997 1.02341 1.22503 0.99269 1.02002 1.07197 1.22132 0.98087 0.86835 0.93272 1.86046 1.34746 1.25671 1.74372 1.20688 1.05610 0.91339 1.08800 0.90853 0.86247 0.88946 0.88158 0.76581 0.89799 0.89412 0.90932 0.90225 0.86076 0.82253 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.62 10.94 55.55 0.61 -20.02 16 2 C 0.08 1.89 5.16 -17.34 -0.09 1.81 16 3 Si 0.91 18.50 29.59 -169.99 -5.03 13.47 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.47 -12.17 9.05 -37.74 -0.34 -12.52 16 8 H 0.08 1.93 7.90 -52.49 -0.41 1.52 16 9 C 0.12 3.24 5.57 -106.85 -0.59 2.64 16 10 C -0.17 -4.37 8.69 -38.84 -0.34 -4.70 16 11 C -0.09 -2.32 10.02 -39.69 -0.40 -2.72 16 12 C -0.23 -5.47 8.66 -39.10 -0.34 -5.81 16 13 C 0.15 3.45 6.25 -83.76 -0.52 2.93 16 14 N -0.66 -11.65 5.30 -9.91 -0.05 -11.70 16 15 C 0.51 9.21 6.93 -10.99 -0.08 9.14 16 16 O -0.50 -11.42 14.27 -14.14 -0.20 -11.62 16 17 C 0.07 1.00 3.27 -27.62 -0.09 0.91 16 18 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 19 C -0.15 -1.65 5.49 -26.33 -0.14 -1.79 16 20 C -0.08 -0.69 6.23 -27.87 -0.17 -0.86 16 21 C -0.29 -2.73 9.97 -36.06 -0.36 -3.09 16 22 C 0.06 0.65 10.88 29.10 0.32 0.97 16 23 O -0.30 -4.38 9.60 -36.79 -0.35 -4.73 16 24 C -0.24 -5.82 9.70 -38.68 -0.38 -6.19 16 25 H 0.28 6.63 8.30 -40.82 -0.34 6.30 16 26 H 0.12 3.22 6.17 -52.49 -0.32 2.89 16 27 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 28 H 0.10 2.41 6.48 -52.48 -0.34 2.07 16 29 H 0.40 5.36 8.45 -40.82 -0.34 5.01 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 0.79 7.78 -51.93 -0.40 0.39 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 306.75 15.07 4.62 4.62 Total: -1.00 -31.60 306.75 -8.28 -39.87 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -4.34 Total: 9.38 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -3.53 Total: -19.29 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.56 Total: -31.72 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.55 Total: -16.35 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.60 -8.28 -39.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837072752.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.907 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds