Wall clock time and date at job start Mon Mar 30 2020 01:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48495 * 109.47432 * 89.99547 * 3 2 1 5 5 H 1.48498 * 109.46929 * 210.00063 * 3 2 1 6 6 H 1.48504 * 109.46998 * 329.99680 * 3 2 1 7 7 C 1.39938 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99969 * 17.10260 * 7 2 1 9 9 C 1.41393 * 120.00244 * 197.10039 * 7 2 1 10 10 C 1.40730 * 120.24523 * 29.34807 * 9 7 2 11 11 C 1.37598 * 119.75045 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.24576 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50174 * 359.97438 * 12 11 10 14 14 C 1.37640 * 120.24862 * 359.67182 * 13 12 11 15 15 C 1.50700 * 120.13180 * 180.32332 * 14 13 12 16 16 C 1.50701 * 109.46813 * 265.30632 * 15 14 13 17 17 O 1.21280 * 120.00223 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99906 * 180.02562 * 16 15 14 19 19 C 1.46501 * 119.99968 * 180.02562 * 18 16 15 20 20 C 1.47198 * 109.46981 * 179.97438 * 19 18 16 21 21 C 8.16545 * 97.21357 * 234.90330 * 2 1 3 22 22 C 9.46565 * 93.03612 * 233.22718 * 2 1 3 23 23 O 1.42900 * 109.47506 * 324.43161 * 22 21 20 24 24 H 0.97004 * 119.99819 * 175.46146 * 1 2 3 25 25 H 1.08003 * 120.12932 * 359.97438 * 10 9 7 26 26 H 1.08002 * 119.87930 * 180.02562 * 11 10 9 27 27 H 1.08001 * 119.75352 * 179.97438 * 12 11 10 28 28 H 1.08005 * 119.87936 * 179.97438 * 13 12 11 29 29 H 1.08999 * 109.46812 * 25.30470 * 15 14 13 30 30 H 1.08998 * 109.47079 * 145.30506 * 15 14 13 31 31 H 0.96998 * 119.99931 * 359.97438 * 18 16 15 32 32 H 1.08998 * 109.46479 * 299.99728 * 19 18 16 33 33 H 1.09002 * 109.47252 * 59.99451 * 19 18 16 34 34 H 1.09000 * 109.47375 * 84.43245 * 22 21 20 35 35 H 1.09001 * 109.47231 * 204.43016 * 22 21 20 36 36 H 0.96696 * 114.00377 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0466 1.4000 5 1 3.5397 1.4402 -0.7000 6 1 1.4396 2.6527 -0.7001 7 6 2.0080 -1.2119 0.0005 8 1 1.5038 -2.1266 -0.2741 9 6 3.3750 -1.2388 0.3606 10 6 3.8884 -0.2916 1.2660 11 6 5.2205 -0.3268 1.6089 12 6 6.0563 -1.2905 1.0655 13 6 5.5616 -2.2284 0.1728 14 6 4.2309 -2.2166 -0.1789 15 6 3.6944 -3.2420 -1.1441 16 6 3.7033 -2.6718 -2.5390 17 8 4.1053 -1.5437 -2.7305 18 7 3.2636 -3.4153 -3.5738 19 6 3.2728 -2.8612 -4.9299 20 6 2.7487 -3.8627 -5.8727 21 6 2.3336 -4.6576 -6.6280 22 6 1.8096 -5.6586 -7.5715 23 8 0.4361 -5.9194 -7.2754 24 1 -0.4850 -0.8375 -0.0665 25 1 3.2394 0.4608 1.6895 26 1 5.6165 0.3989 2.3039 27 1 7.1007 -1.3106 1.3399 28 1 6.2217 -2.9744 -0.2447 29 1 4.3205 -4.1337 -1.1120 30 1 2.6739 -3.5044 -0.8653 31 1 2.9418 -4.3174 -3.4206 32 1 2.6474 -1.9690 -4.9620 33 1 4.2936 -2.5995 -5.2086 34 1 1.8960 -5.2786 -8.5894 35 1 2.3828 -6.5810 -7.4782 36 1 0.0249 -6.5716 -7.8589 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848040615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:13 Heat of formation + Delta-G solvation = -22.292834 kcal Electronic energy + Delta-G solvation = -19722.731566 eV Core-core repulsion = 16558.769492 eV Total energy + Delta-G solvation = -3163.962074 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.29833 -37.63337 -37.37297 -35.14121 -33.61507 -32.80197 -31.81907 -30.11175 -28.74233 -26.87199 -25.21152 -24.30499 -21.38089 -20.48680 -19.41747 -18.08202 -17.93654 -17.57449 -16.19829 -15.88272 -15.41732 -15.28062 -15.11063 -14.38170 -14.10290 -13.84882 -13.61018 -13.15436 -12.99513 -12.50351 -12.45023 -12.06252 -11.86186 -11.28728 -11.22243 -11.18865 -10.74397 -10.46301 -10.25580 -10.10498 -10.04997 -9.65546 -9.22044 -9.19694 -8.91669 -8.75605 -7.61123 -7.54670 -7.13164 -4.45073 2.15347 2.34175 2.66338 2.80046 3.29473 3.31987 3.48300 3.68594 3.71491 3.87846 4.14507 4.47511 4.66326 4.86112 5.03667 5.25701 5.41070 5.53936 5.62817 5.72181 5.87182 5.99440 6.11435 6.24777 6.26758 6.58625 6.66804 6.79369 7.11008 7.18026 7.32927 7.40501 7.56421 7.71761 7.75848 7.88785 7.90818 8.06254 8.45629 8.65228 8.80831 8.86344 10.12649 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.004537 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.873823 B = 6169.477780 C = 7044.079599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.047 3.953 3 Si 1.071 2.929 4 H -0.279 1.279 5 H -0.258 1.258 6 H -0.293 1.293 7 C -0.513 4.513 8 H 0.075 0.925 9 C 0.116 3.884 10 C -0.245 4.245 11 C -0.076 4.076 12 C -0.246 4.246 13 C -0.067 4.067 14 C -0.173 4.173 15 C -0.069 4.069 16 C 0.520 3.480 17 O -0.515 6.515 18 N -0.743 5.743 19 C 0.231 3.769 20 C -0.154 4.154 21 C -0.181 4.181 22 C 0.194 3.806 23 O -0.566 6.566 24 H 0.283 0.717 25 H 0.105 0.895 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.399 0.601 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.730 -10.680 -11.448 16.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.172 4.172 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.182 1.182 6 H -0.221 1.221 7 C -0.542 4.542 8 H 0.093 0.907 9 C 0.113 3.887 10 C -0.264 4.264 11 C -0.094 4.094 12 C -0.265 4.265 13 C -0.086 4.086 14 C -0.174 4.174 15 C -0.109 4.109 16 C 0.308 3.692 17 O -0.388 6.388 18 N -0.399 5.399 19 C 0.108 3.892 20 C -0.155 4.155 21 C -0.183 4.183 22 C 0.117 3.883 23 O -0.373 6.373 24 H 0.094 0.906 25 H 0.122 0.878 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.233 0.767 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.842 -7.774 -11.071 14.063 hybrid contribution -0.234 -2.637 -0.525 2.699 sum 3.607 -10.411 -11.595 15.996 Atomic orbital electron populations 1.70568 1.08031 1.32730 1.33240 1.27161 0.95542 1.04429 0.90044 0.83639 0.76107 0.73025 0.77474 1.20653 1.18188 1.22065 1.20537 0.94850 0.96398 1.42415 0.90729 1.17506 0.92853 0.89889 0.88492 1.21128 0.95672 1.04882 1.04694 1.20606 0.93879 0.96895 0.98016 1.20323 0.98064 1.01393 1.06750 1.20424 0.94059 0.97352 0.96746 1.19010 0.93328 1.02233 1.02842 1.20257 1.02989 0.97704 0.89943 1.21074 0.76064 0.85743 0.86325 1.90693 1.44952 1.18240 1.84900 1.46126 1.68809 1.18903 1.06036 1.18058 1.01018 0.91615 0.78482 1.22354 0.97679 0.97924 0.97526 1.21729 1.02202 0.96811 0.97537 1.18688 0.82416 0.93544 0.93627 1.86586 1.24013 1.65677 1.61033 0.90589 0.87777 0.88882 0.89010 0.89175 0.90353 0.88798 0.76748 0.88871 0.89156 0.90983 0.90987 0.76532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.88 13.65 55.55 0.76 -22.12 16 2 C 0.05 1.29 5.42 -17.34 -0.09 1.19 16 3 Si 1.07 26.36 24.89 -169.99 -4.23 22.13 16 4 H -0.28 -6.44 6.44 56.52 0.36 -6.08 16 5 H -0.26 -6.59 7.02 56.52 0.40 -6.20 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.51 -13.96 8.80 -37.75 -0.33 -14.29 16 8 H 0.07 2.03 6.60 -52.49 -0.35 1.69 16 9 C 0.12 3.02 5.13 -106.82 -0.55 2.47 16 10 C -0.24 -6.18 7.26 -38.87 -0.28 -6.47 16 11 C -0.08 -1.72 10.02 -39.66 -0.40 -2.12 16 12 C -0.25 -5.37 10.05 -39.29 -0.39 -5.76 16 13 C -0.07 -1.48 9.66 -39.66 -0.38 -1.86 16 14 C -0.17 -4.04 4.43 -103.91 -0.46 -4.50 16 15 C -0.07 -1.35 5.36 -29.03 -0.16 -1.50 16 16 C 0.52 10.39 7.82 -10.98 -0.09 10.31 16 17 O -0.51 -12.52 16.03 5.56 0.09 -12.44 16 18 N -0.74 -11.69 5.54 -63.16 -0.35 -12.04 16 19 C 0.23 3.36 6.15 -6.83 -0.04 3.31 16 20 C -0.15 -2.08 13.45 -37.14 -0.50 -2.58 16 21 C -0.18 -2.23 13.72 -37.14 -0.51 -2.74 16 22 C 0.19 1.57 7.52 34.37 0.26 1.83 16 23 O -0.57 -5.19 13.62 -35.23 -0.48 -5.67 16 24 H 0.28 7.62 8.73 -40.82 -0.36 7.26 16 25 H 0.10 2.61 4.43 -52.48 -0.23 2.38 16 26 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 27 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 29 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 30 H 0.09 1.82 6.51 -51.93 -0.34 1.48 16 31 H 0.40 5.25 8.45 -40.82 -0.34 4.91 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.39 1.25 9.12 45.56 0.42 1.67 16 LS Contribution 317.74 15.07 4.79 4.79 Total: -1.00 -34.14 317.74 -6.77 -40.91 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -3.42 Total: 7.15 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -3.93 Total: -22.72 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.41 Total: -34.16 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.39 Total: -18.10 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -4.23 Total: 22.13 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.14 -6.77 -40.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848040615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.621 kcal (2) G-P(sol) polarization free energy of solvation -34.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds