Wall clock time and date at job start Mon Mar 30 2020 01:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48495 * 109.47432 * 89.99547 * 3 2 1 5 5 H 1.48498 * 109.46929 * 210.00063 * 3 2 1 6 6 H 1.48504 * 109.46998 * 329.99680 * 3 2 1 7 7 C 1.39938 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99969 * 17.10260 * 7 2 1 9 9 C 1.41393 * 120.00244 * 197.10039 * 7 2 1 10 10 C 1.40730 * 120.24523 * 29.34807 * 9 7 2 11 11 C 1.37598 * 119.75045 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.24576 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50174 * 359.97438 * 12 11 10 14 14 C 1.37640 * 120.24862 * 359.67182 * 13 12 11 15 15 C 1.50700 * 120.13180 * 180.32332 * 14 13 12 16 16 C 1.50701 * 109.46813 * 265.30632 * 15 14 13 17 17 O 1.21280 * 120.00223 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99906 * 180.02562 * 16 15 14 19 19 C 1.46501 * 119.99968 * 180.02562 * 18 16 15 20 20 C 1.47198 * 109.46981 * 179.97438 * 19 18 16 21 21 C 8.16545 * 97.21357 * 234.90330 * 2 1 3 22 22 C 9.46565 * 93.03612 * 233.22718 * 2 1 3 23 23 O 1.42900 * 109.47506 * 324.43161 * 22 21 20 24 24 H 0.97004 * 119.99819 * 175.46146 * 1 2 3 25 25 H 1.08003 * 120.12932 * 359.97438 * 10 9 7 26 26 H 1.08002 * 119.87930 * 180.02562 * 11 10 9 27 27 H 1.08001 * 119.75352 * 179.97438 * 12 11 10 28 28 H 1.08005 * 119.87936 * 179.97438 * 13 12 11 29 29 H 1.08999 * 109.46812 * 25.30470 * 15 14 13 30 30 H 1.08998 * 109.47079 * 145.30506 * 15 14 13 31 31 H 0.96998 * 119.99931 * 359.97438 * 18 16 15 32 32 H 1.08998 * 109.46479 * 299.99728 * 19 18 16 33 33 H 1.09002 * 109.47252 * 59.99451 * 19 18 16 34 34 H 1.09000 * 109.47375 * 84.43245 * 22 21 20 35 35 H 1.09001 * 109.47231 * 204.43016 * 22 21 20 36 36 H 0.96696 * 114.00377 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0466 1.4000 5 1 3.5397 1.4402 -0.7000 6 1 1.4396 2.6527 -0.7001 7 6 2.0080 -1.2119 0.0005 8 1 1.5038 -2.1266 -0.2741 9 6 3.3750 -1.2388 0.3606 10 6 3.8884 -0.2916 1.2660 11 6 5.2205 -0.3268 1.6089 12 6 6.0563 -1.2905 1.0655 13 6 5.5616 -2.2284 0.1728 14 6 4.2309 -2.2166 -0.1789 15 6 3.6944 -3.2420 -1.1441 16 6 3.7033 -2.6718 -2.5390 17 8 4.1053 -1.5437 -2.7305 18 7 3.2636 -3.4153 -3.5738 19 6 3.2728 -2.8612 -4.9299 20 6 2.7487 -3.8627 -5.8727 21 6 2.3336 -4.6576 -6.6280 22 6 1.8096 -5.6586 -7.5715 23 8 0.4361 -5.9194 -7.2754 24 1 -0.4850 -0.8375 -0.0665 25 1 3.2394 0.4608 1.6895 26 1 5.6165 0.3989 2.3039 27 1 7.1007 -1.3106 1.3399 28 1 6.2217 -2.9744 -0.2447 29 1 4.3205 -4.1337 -1.1120 30 1 2.6739 -3.5044 -0.8653 31 1 2.9418 -4.3174 -3.4206 32 1 2.6474 -1.9690 -4.9620 33 1 4.2936 -2.5995 -5.2086 34 1 1.8960 -5.2786 -8.5894 35 1 2.3828 -6.5810 -7.4782 36 1 0.0249 -6.5716 -7.8589 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848040615.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:13 Heat of formation + Delta-G solvation = -48.211508 kcal Electronic energy + Delta-G solvation = -19723.855484 eV Core-core repulsion = 16558.769492 eV Total energy + Delta-G solvation = -3165.085992 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.89656 -39.37282 -38.03519 -36.44244 -35.58822 -34.00419 -33.42817 -31.99850 -29.95500 -28.23044 -26.59211 -25.90345 -23.22564 -22.12265 -21.07676 -20.02892 -18.84939 -18.49063 -17.64429 -17.21845 -16.83028 -16.70969 -16.14791 -15.91301 -15.81925 -15.45246 -15.05389 -14.70943 -14.43336 -14.28905 -13.88682 -13.66841 -13.18867 -13.07871 -12.82999 -12.60224 -12.15861 -12.08304 -11.93579 -11.58065 -11.49226 -11.13738 -10.99244 -10.85033 -10.61929 -10.12301 -9.55514 -9.33669 -9.14312 -6.48270 0.79808 0.91870 1.19106 1.32284 1.38352 1.53007 1.73899 1.75183 2.16999 2.49526 2.72327 2.91685 3.53115 3.85752 4.01926 4.22874 4.26100 4.33408 4.38792 4.46576 4.51114 4.54884 4.57949 4.61516 4.68863 4.91728 4.99591 5.25996 5.33107 5.51895 5.62112 5.84011 5.90684 6.04161 6.19994 6.33097 6.48093 6.54171 6.75371 6.89434 6.89555 7.30864 8.07470 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.004537 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.873823 B = 6169.477780 C = 7044.079599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.013 3.987 3 Si 1.099 2.901 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.287 1.287 7 C -0.535 4.535 8 H 0.058 0.942 9 C 0.086 3.914 10 C -0.266 4.266 11 C -0.088 4.088 12 C -0.231 4.231 13 C -0.078 4.078 14 C -0.177 4.177 15 C -0.070 4.070 16 C 0.521 3.479 17 O -0.566 6.566 18 N -0.726 5.726 19 C 0.235 3.765 20 C -0.196 4.196 21 C -0.164 4.164 22 C 0.187 3.813 23 O -0.595 6.595 24 H 0.276 0.724 25 H 0.098 0.902 26 H 0.125 0.875 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.413 0.587 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.960 -12.404 -12.147 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.200 4.200 3 Si 0.923 3.077 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.214 1.214 7 C -0.565 4.565 8 H 0.076 0.924 9 C 0.083 3.917 10 C -0.285 4.285 11 C -0.106 4.106 12 C -0.250 4.250 13 C -0.096 4.096 14 C -0.179 4.179 15 C -0.110 4.110 16 C 0.309 3.691 17 O -0.444 6.444 18 N -0.381 5.381 19 C 0.112 3.888 20 C -0.197 4.197 21 C -0.165 4.165 22 C 0.111 3.889 23 O -0.406 6.406 24 H 0.087 0.913 25 H 0.116 0.884 26 H 0.143 0.857 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.140 0.860 30 H 0.107 0.893 31 H 0.249 0.751 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 6.045 -9.560 -11.783 16.333 hybrid contribution -0.714 -2.305 -0.370 2.441 sum 5.331 -11.865 -12.153 17.802 Atomic orbital electron populations 1.70614 1.08378 1.32239 1.36698 1.27893 0.95800 1.06385 0.89887 0.83249 0.74480 0.71506 0.78475 1.18241 1.20146 1.21448 1.20493 0.95887 0.95842 1.44306 0.92399 1.17785 0.92905 0.91515 0.89461 1.21309 0.97087 1.04929 1.05156 1.21013 0.93008 0.97978 0.98551 1.20901 0.99733 0.99683 1.04650 1.20909 0.93868 0.98274 0.96570 1.19493 0.94027 1.01770 1.02564 1.20314 1.03497 0.98272 0.88872 1.21107 0.75610 0.85187 0.87186 1.90670 1.47700 1.20296 1.85698 1.45933 1.67066 1.19086 1.05966 1.17939 1.01263 0.91527 0.78029 1.22164 0.99459 0.99203 0.98863 1.22817 1.00680 0.96253 0.96780 1.19084 0.82354 0.93809 0.93647 1.86508 1.24587 1.66991 1.62516 0.91330 0.88441 0.85732 0.85248 0.85509 0.85982 0.89305 0.75109 0.90661 0.88443 0.88159 0.87958 0.73688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.66 13.65 21.82 0.30 -49.36 16 2 C 0.01 0.75 5.42 85.26 0.46 1.21 16 3 Si 1.10 54.72 24.89 68.60 1.71 56.43 16 4 H -0.26 -11.64 6.44 99.48 0.64 -11.00 16 5 H -0.28 -14.41 7.02 99.48 0.70 -13.71 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.53 -30.27 8.80 23.46 0.21 -30.06 16 8 H 0.06 3.34 6.60 -2.91 -0.02 3.32 16 9 C 0.09 4.52 5.13 -21.29 -0.11 4.41 16 10 C -0.27 -13.31 7.26 22.73 0.16 -13.15 16 11 C -0.09 -3.76 10.02 22.22 0.22 -3.54 16 12 C -0.23 -9.15 10.05 22.46 0.23 -8.93 16 13 C -0.08 -3.17 9.66 22.22 0.21 -2.95 16 14 C -0.18 -8.09 4.43 -19.40 -0.09 -8.17 16 15 C -0.07 -2.65 5.36 29.10 0.16 -2.49 16 16 C 0.52 20.72 7.82 87.66 0.69 21.41 16 17 O -0.57 -27.96 16.03 -3.03 -0.05 -28.01 16 18 N -0.73 -22.59 5.54 -472.12 -2.61 -25.20 16 19 C 0.23 6.90 6.15 84.57 0.52 7.42 16 20 C -0.20 -5.17 13.45 31.14 0.42 -4.75 16 21 C -0.16 -3.75 13.72 31.14 0.43 -3.32 16 22 C 0.19 2.45 7.52 70.18 0.53 2.98 16 23 O -0.59 -9.45 13.62 -148.98 -2.03 -11.48 16 24 H 0.28 15.76 8.73 -92.71 -0.81 14.95 16 25 H 0.10 4.91 4.43 -2.91 -0.01 4.90 16 26 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 27 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 28 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 29 H 0.12 3.46 8.05 -2.39 -0.02 3.44 16 30 H 0.09 3.46 6.51 -2.39 -0.02 3.45 16 31 H 0.41 10.45 8.45 -92.71 -0.78 9.66 16 32 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.41 1.56 9.12 -74.06 -0.68 0.89 16 Total: -1.00 -76.27 317.74 0.91 -75.35 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -0.44 Total: 22.21 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: 4.04 Total: -39.94 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -2.32 Total: -74.56 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -2.08 Total: -39.49 kcal Atomic # 14 Polarization: 54.72 SS G_CDS: 1.71 Total: 56.43 kcal Total: -76.27 0.91 -75.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848040615.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.141 kcal (2) G-P(sol) polarization free energy of solvation -76.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds