Wall clock time and date at job start Mon Mar 30 2020 01:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00102 * 2 1 4 4 H 1.48497 * 109.46943 * 240.00370 * 3 2 1 5 5 H 1.48506 * 109.46925 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47119 * 119.99867 * 3 2 1 7 7 C 1.38693 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1 9 9 O 1.34809 * 120.00349 * 359.97438 * 7 2 1 10 10 C 1.35519 * 117.00488 * 185.05920 * 9 7 2 11 11 C 1.38838 * 120.15882 * 354.40380 * 10 9 7 12 12 C 1.38024 * 120.07104 * 179.97438 * 11 10 9 13 13 C 1.38567 * 120.40539 * 359.97438 * 12 11 10 14 14 C 1.37828 * 120.32100 * 0.02562 * 13 12 11 15 15 C 1.39664 * 119.92228 * 359.97438 * 14 13 12 16 16 C 1.47536 * 120.20003 * 180.02562 * 15 14 13 17 17 O 1.21589 * 119.99931 * 180.02562 * 16 15 14 18 18 N 1.34771 * 120.00007 * 359.97438 * 16 15 14 19 19 C 1.46495 * 120.00197 * 179.97438 * 18 16 15 20 20 H 1.09006 * 110.34158 * 34.30532 * 19 18 16 21 21 C 1.51102 * 110.38843 * 272.01651 * 19 18 16 22 22 C 1.30527 * 111.10300 * 224.75192 * 21 19 18 23 23 C 1.51104 * 111.10382 * 359.97438 * 22 21 19 24 24 C 1.54633 * 110.38944 * 156.58929 * 19 18 16 25 25 H 0.96996 * 120.00218 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.96607 * 359.95179 * 11 10 9 27 27 H 1.08006 * 119.79708 * 180.02562 * 12 11 10 28 28 H 1.08003 * 119.84200 * 180.02562 * 13 12 11 29 29 H 1.08001 * 120.03758 * 180.27400 * 14 13 12 30 30 H 0.97005 * 120.00094 * 0.02562 * 18 16 15 31 31 H 1.07992 * 124.45138 * 44.77072 * 21 19 18 32 32 H 1.08002 * 124.44719 * 180.02562 * 22 21 19 33 33 H 1.09001 * 110.38474 * 135.25621 * 23 22 21 34 34 H 1.09009 * 110.38745 * 257.51136 * 23 22 21 35 35 H 1.09003 * 111.03886 * 261.47910 * 24 19 18 36 36 H 1.08997 * 111.03660 * 25.41039 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0086 -1.2011 -0.0005 8 1 3.0887 -1.2012 -0.0010 9 8 1.3346 -2.3686 -0.0005 10 6 2.0686 -3.5029 0.1054 11 6 3.4555 -3.4401 0.0909 12 6 4.2013 -4.5964 0.1995 13 6 3.5747 -5.8260 0.3240 14 6 2.1989 -5.9074 0.3402 15 6 1.4310 -4.7459 0.2313 16 6 -0.0421 -4.8259 0.2486 17 8 -0.7071 -3.8124 0.1530 18 7 -0.6506 -6.0223 0.3692 19 6 -2.1133 -6.1017 0.3869 20 1 -2.5421 -5.3389 -0.2632 21 6 -2.6321 -5.9435 1.7973 22 6 -3.5568 -6.8265 2.0597 23 6 -3.8094 -7.7204 0.8678 24 6 -2.5819 -7.5086 -0.0515 25 1 -0.4850 0.8400 -0.0004 26 1 3.9514 -2.4856 -0.0058 27 1 5.2800 -4.5425 0.1881 28 1 4.1672 -6.7251 0.4087 29 1 1.7153 -6.8677 0.4419 30 1 -0.1201 -6.8309 0.4451 31 1 -2.2837 -5.1977 2.4963 32 1 -4.0741 -6.9071 3.0043 33 1 -3.8741 -8.7622 1.1816 34 1 -4.7242 -7.4213 0.3560 35 1 -2.8723 -7.5145 -1.1022 36 1 -1.8128 -8.2557 0.1442 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855425725.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:57 Heat of formation + Delta-G solvation = -12.054383 kcal Electronic energy + Delta-G solvation = -20389.361694 eV Core-core repulsion = 17225.843592 eV Total energy + Delta-G solvation = -3163.518102 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.77406 -38.79989 -37.26944 -36.29754 -33.20816 -32.32107 -30.49174 -28.97251 -28.90590 -26.86165 -25.32842 -23.01300 -21.52852 -20.78747 -19.98273 -18.60007 -18.01335 -17.56624 -16.28147 -16.10282 -15.47803 -14.67436 -14.46785 -14.13467 -14.12455 -13.83108 -13.52089 -13.25956 -12.57165 -12.42625 -12.18845 -11.91678 -11.70222 -11.60008 -11.37171 -11.28281 -11.22642 -11.08442 -10.87246 -10.77435 -10.46634 -9.56437 -9.04517 -8.86305 -8.70970 -8.53570 -8.25446 -7.29437 -6.42834 -4.02970 1.73647 2.31474 2.33508 3.12539 3.14708 3.17126 3.76933 3.81833 3.94836 4.58980 4.61761 4.76514 5.05531 5.08520 5.19606 5.34476 5.44968 5.48329 5.55556 5.69332 5.72681 5.80220 5.83168 6.01665 6.12748 6.13973 6.23233 6.57947 6.59285 6.70899 6.84550 6.92918 7.07357 7.09676 7.25534 7.30564 7.71048 7.93764 8.17481 8.96603 9.14282 9.69287 10.70931 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017927 B = 0.005429 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.542395 B = 5156.519143 C = 6516.673152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.404 4.404 8 H 0.093 0.907 9 O -0.123 6.123 10 C 0.189 3.811 11 C -0.238 4.238 12 C -0.051 4.051 13 C -0.231 4.231 14 C -0.038 4.038 15 C -0.227 4.227 16 C 0.553 3.447 17 O -0.501 6.501 18 N -0.736 5.736 19 C 0.166 3.834 20 H 0.099 0.901 21 C -0.154 4.154 22 C -0.179 4.179 23 C -0.096 4.096 24 C -0.129 4.129 25 H 0.272 0.728 26 H 0.131 0.869 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.392 0.608 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.906 -13.745 1.425 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.480 4.480 8 H 0.111 0.889 9 O -0.022 6.022 10 C 0.129 3.871 11 C -0.257 4.257 12 C -0.070 4.070 13 C -0.250 4.250 14 C -0.057 4.057 15 C -0.232 4.232 16 C 0.343 3.657 17 O -0.375 6.375 18 N -0.391 5.391 19 C 0.062 3.938 20 H 0.117 0.883 21 C -0.173 4.173 22 C -0.198 4.198 23 C -0.134 4.134 24 C -0.167 4.167 25 H 0.082 0.918 26 H 0.149 0.851 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.227 0.773 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.878 -12.699 1.300 12.903 hybrid contribution 0.871 0.421 0.172 0.983 sum -1.007 -12.277 1.472 12.406 Atomic orbital electron populations 1.70118 1.05971 1.27818 1.42524 1.25379 0.95793 0.98938 0.96180 0.85801 0.78788 0.79694 0.79249 1.19373 1.20162 1.19370 1.21449 0.91859 0.81163 1.53555 0.88945 1.84173 1.33497 1.10949 1.73536 1.19288 0.89858 0.87429 0.90520 1.21155 0.93393 0.99319 1.11880 1.20892 0.98619 0.92325 0.95139 1.20458 0.94065 0.97109 1.13409 1.20760 0.93839 0.95528 0.95580 1.18873 0.92019 0.92132 1.20162 1.18276 0.87803 0.82992 0.76639 1.90945 1.65761 1.33824 1.46937 1.45978 1.05808 1.09180 1.78108 1.20717 0.81172 0.97427 0.94531 0.88336 1.23761 0.97414 0.98381 0.97787 1.23163 0.99839 0.98164 0.98640 1.21328 0.98154 0.99364 0.94509 1.22794 0.97835 0.96050 1.00025 0.91822 0.85102 0.87208 0.87302 0.87071 0.77348 0.85770 0.85948 0.91243 0.90602 0.90281 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.32 13.67 55.48 0.76 -24.56 16 2 C 0.04 1.26 5.49 -17.52 -0.10 1.16 16 3 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.40 -11.54 9.49 30.90 0.29 -11.25 16 8 H 0.09 2.39 5.21 -52.48 -0.27 2.11 16 9 O -0.12 -3.68 7.84 -21.04 -0.16 -3.84 16 10 C 0.19 4.74 6.66 -38.60 -0.26 4.48 16 11 C -0.24 -5.16 9.16 -39.44 -0.36 -5.53 16 12 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 13 C -0.23 -3.82 10.02 -39.61 -0.40 -4.22 16 14 C -0.04 -0.66 9.53 -39.20 -0.37 -1.04 16 15 C -0.23 -4.99 5.89 -104.81 -0.62 -5.61 16 16 C 0.55 12.33 7.76 -12.47 -0.10 12.23 16 17 O -0.50 -13.85 14.84 -16.57 -0.25 -14.10 16 18 N -0.74 -12.18 5.08 -54.94 -0.28 -12.45 16 19 C 0.17 2.52 3.21 -68.03 -0.22 2.30 16 20 H 0.10 1.74 7.60 -51.93 -0.39 1.35 16 21 C -0.15 -2.28 10.40 -35.70 -0.37 -2.65 16 22 C -0.18 -2.12 10.78 -35.70 -0.38 -2.50 16 23 C -0.10 -0.95 6.81 -26.72 -0.18 -1.13 16 24 C -0.13 -1.39 6.89 -24.91 -0.17 -1.56 16 25 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 27 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 28 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 29 H 0.11 1.48 6.40 -52.49 -0.34 1.15 16 30 H 0.39 5.21 6.43 -40.82 -0.26 4.94 16 31 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.71 7.81 -51.93 -0.41 0.31 16 LS Contribution 308.50 15.07 4.65 4.65 Total: -1.00 -34.38 308.50 -8.00 -42.38 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -4.06 Total: 8.92 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -3.63 Total: -16.62 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.48 Total: -37.01 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.41 Total: -17.94 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.38 -8.00 -42.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855425725.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.330 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds