Wall clock time and date at job start Mon Mar 30 2020 01:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00102 * 2 1 4 4 H 1.48497 * 109.46943 * 240.00370 * 3 2 1 5 5 H 1.48506 * 109.46925 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47119 * 119.99867 * 3 2 1 7 7 C 1.38693 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1 9 9 O 1.34809 * 120.00349 * 359.97438 * 7 2 1 10 10 C 1.35519 * 117.00488 * 185.05920 * 9 7 2 11 11 C 1.38838 * 120.15882 * 354.40380 * 10 9 7 12 12 C 1.38024 * 120.07104 * 179.97438 * 11 10 9 13 13 C 1.38567 * 120.40539 * 359.97438 * 12 11 10 14 14 C 1.37828 * 120.32100 * 0.02562 * 13 12 11 15 15 C 1.39664 * 119.92228 * 359.97438 * 14 13 12 16 16 C 1.47536 * 120.20003 * 180.02562 * 15 14 13 17 17 O 1.21589 * 119.99931 * 180.02562 * 16 15 14 18 18 N 1.34771 * 120.00007 * 359.97438 * 16 15 14 19 19 C 1.46495 * 120.00197 * 179.97438 * 18 16 15 20 20 H 1.09006 * 110.34158 * 34.30532 * 19 18 16 21 21 C 1.51102 * 110.38843 * 272.01651 * 19 18 16 22 22 C 1.30527 * 111.10300 * 224.75192 * 21 19 18 23 23 C 1.51104 * 111.10382 * 359.97438 * 22 21 19 24 24 C 1.54633 * 110.38944 * 156.58929 * 19 18 16 25 25 H 0.96996 * 120.00218 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.96607 * 359.95179 * 11 10 9 27 27 H 1.08006 * 119.79708 * 180.02562 * 12 11 10 28 28 H 1.08003 * 119.84200 * 180.02562 * 13 12 11 29 29 H 1.08001 * 120.03758 * 180.27400 * 14 13 12 30 30 H 0.97005 * 120.00094 * 0.02562 * 18 16 15 31 31 H 1.07992 * 124.45138 * 44.77072 * 21 19 18 32 32 H 1.08002 * 124.44719 * 180.02562 * 22 21 19 33 33 H 1.09001 * 110.38474 * 135.25621 * 23 22 21 34 34 H 1.09009 * 110.38745 * 257.51136 * 23 22 21 35 35 H 1.09003 * 111.03886 * 261.47910 * 24 19 18 36 36 H 1.08997 * 111.03660 * 25.41039 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0086 -1.2011 -0.0005 8 1 3.0887 -1.2012 -0.0010 9 8 1.3346 -2.3686 -0.0005 10 6 2.0686 -3.5029 0.1054 11 6 3.4555 -3.4401 0.0909 12 6 4.2013 -4.5964 0.1995 13 6 3.5747 -5.8260 0.3240 14 6 2.1989 -5.9074 0.3402 15 6 1.4310 -4.7459 0.2313 16 6 -0.0421 -4.8259 0.2486 17 8 -0.7071 -3.8124 0.1530 18 7 -0.6506 -6.0223 0.3692 19 6 -2.1133 -6.1017 0.3869 20 1 -2.5421 -5.3389 -0.2632 21 6 -2.6321 -5.9435 1.7973 22 6 -3.5568 -6.8265 2.0597 23 6 -3.8094 -7.7204 0.8678 24 6 -2.5819 -7.5086 -0.0515 25 1 -0.4850 0.8400 -0.0004 26 1 3.9514 -2.4856 -0.0058 27 1 5.2800 -4.5425 0.1881 28 1 4.1672 -6.7251 0.4087 29 1 1.7153 -6.8677 0.4419 30 1 -0.1201 -6.8309 0.4451 31 1 -2.2837 -5.1977 2.4963 32 1 -4.0741 -6.9071 3.0043 33 1 -3.8741 -8.7622 1.1816 34 1 -4.7242 -7.4213 0.3560 35 1 -2.8723 -7.5145 -1.1022 36 1 -1.8128 -8.2557 0.1442 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855425725.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:57 Heat of formation + Delta-G solvation = -35.777924 kcal Electronic energy + Delta-G solvation = -20390.390424 eV Core-core repulsion = 17225.843592 eV Total energy + Delta-G solvation = -3164.546832 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.37899 -40.27221 -38.79595 -38.00291 -34.77047 -34.31753 -32.04432 -30.57294 -29.94192 -28.12337 -27.28282 -24.57248 -23.15185 -21.91400 -21.57298 -19.89801 -19.66142 -19.23650 -17.91309 -17.47998 -16.70604 -16.35458 -16.11397 -15.90153 -15.73829 -15.34354 -15.04124 -14.84283 -14.27228 -14.01364 -13.55525 -13.34386 -12.98851 -12.89411 -12.70003 -12.61800 -12.50464 -12.38800 -12.31208 -12.15744 -12.11981 -11.43901 -10.83298 -10.64279 -10.10745 -9.93788 -9.78442 -9.04190 -8.45178 -6.16627 0.12404 0.72478 1.22946 1.31180 1.44586 1.49509 2.10483 2.15533 2.39726 2.87225 3.22000 3.46836 3.57913 3.74072 3.98152 4.07780 4.18411 4.28833 4.40605 4.48547 4.52049 4.61775 4.75858 4.83462 4.95351 4.98183 5.06446 5.12133 5.15886 5.24400 5.48143 5.53785 5.61025 5.61801 5.69174 5.88008 5.95341 6.17068 6.72824 6.93801 7.51275 7.80152 8.75346 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017927 B = 0.005429 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.542395 B = 5156.519143 C = 6516.673152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.023 4.023 3 Si 1.023 2.977 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.429 4.429 8 H 0.107 0.893 9 O -0.190 6.190 10 C 0.147 3.853 11 C -0.258 4.258 12 C -0.040 4.040 13 C -0.200 4.200 14 C -0.030 4.030 15 C -0.246 4.246 16 C 0.546 3.454 17 O -0.571 6.571 18 N -0.709 5.709 19 C 0.158 3.842 20 H 0.057 0.943 21 C -0.206 4.206 22 C -0.138 4.138 23 C -0.094 4.094 24 C -0.117 4.117 25 H 0.271 0.729 26 H 0.123 0.877 27 H 0.155 0.845 28 H 0.165 0.835 29 H 0.161 0.839 30 H 0.411 0.589 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.246 -18.351 1.789 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.222 4.222 3 Si 0.841 3.159 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.505 4.505 8 H 0.124 0.876 9 O -0.092 6.092 10 C 0.092 3.908 11 C -0.277 4.277 12 C -0.058 4.058 13 C -0.218 4.218 14 C -0.048 4.048 15 C -0.251 4.251 16 C 0.336 3.664 17 O -0.450 6.450 18 N -0.364 5.364 19 C 0.054 3.946 20 H 0.075 0.925 21 C -0.226 4.226 22 C -0.157 4.157 23 C -0.131 4.131 24 C -0.155 4.155 25 H 0.080 0.920 26 H 0.141 0.859 27 H 0.172 0.828 28 H 0.183 0.817 29 H 0.178 0.822 30 H 0.250 0.750 31 H 0.107 0.893 32 H 0.162 0.838 33 H 0.122 0.878 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.323 -17.438 1.673 17.521 hybrid contribution 0.305 1.330 0.123 1.370 sum 0.628 -16.109 1.796 16.221 Atomic orbital electron populations 1.70326 1.08433 1.28641 1.46866 1.26790 0.96736 1.03193 0.95481 0.84613 0.77334 0.73757 0.80177 1.17686 1.19785 1.17794 1.22017 0.92707 0.81858 1.53924 0.87577 1.84181 1.35174 1.12170 1.77687 1.20121 0.91733 0.87598 0.91379 1.21303 0.92258 1.01013 1.13154 1.21442 1.00733 0.91258 0.92396 1.21187 0.93897 0.98468 1.08289 1.21311 0.94484 0.95573 0.93436 1.19345 0.92438 0.92965 1.20355 1.18616 0.88266 0.83627 0.75919 1.90921 1.67153 1.36599 1.50322 1.45751 1.06915 1.08000 1.75697 1.20912 0.79790 0.99518 0.94423 0.92490 1.23506 1.01101 1.00371 0.97576 1.23561 0.96450 0.95764 0.99902 1.21438 0.97962 1.00641 0.93076 1.22819 0.98796 0.92898 1.00941 0.92049 0.85905 0.82770 0.81702 0.82197 0.75028 0.89256 0.83823 0.87817 0.89377 0.89157 0.88154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -60.54 13.67 21.62 0.30 -60.25 16 2 C -0.02 -1.39 5.49 84.85 0.47 -0.92 16 3 Si 1.02 44.95 29.55 68.60 2.03 46.98 16 4 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 7 C -0.43 -26.51 9.49 67.93 0.64 -25.87 16 8 H 0.11 5.86 5.21 -2.91 -0.02 5.84 16 9 O -0.19 -12.37 7.84 0.90 0.01 -12.36 16 10 C 0.15 7.77 6.66 22.91 0.15 7.92 16 11 C -0.26 -11.25 9.16 22.36 0.20 -11.05 16 12 C -0.04 -1.27 10.03 22.30 0.22 -1.05 16 13 C -0.20 -5.41 10.02 22.25 0.22 -5.19 16 14 C -0.03 -0.91 9.53 22.52 0.21 -0.70 16 15 C -0.25 -11.02 5.89 -19.99 -0.12 -11.14 16 16 C 0.55 25.80 7.76 86.70 0.67 26.47 16 17 O -0.57 -35.00 14.84 16.90 0.25 -34.75 16 18 N -0.71 -23.61 5.08 -446.01 -2.27 -25.88 16 19 C 0.16 4.91 3.21 44.93 0.14 5.05 16 20 H 0.06 2.22 7.60 -2.38 -0.02 2.21 16 21 C -0.21 -6.34 10.40 26.26 0.27 -6.07 16 22 C -0.14 -2.99 10.78 26.26 0.28 -2.71 16 23 C -0.09 -1.49 6.81 30.60 0.21 -1.28 16 24 C -0.12 -2.18 6.89 31.77 0.22 -1.96 16 25 H 0.27 16.56 8.31 -92.71 -0.77 15.79 16 26 H 0.12 5.42 5.64 -2.91 -0.02 5.40 16 27 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 28 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.16 3.30 6.40 -2.91 -0.02 3.29 16 30 H 0.41 9.86 6.43 -92.70 -0.60 9.26 16 31 H 0.09 3.31 8.06 -2.91 -0.02 3.29 16 32 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.10 1.41 7.81 -2.39 -0.02 1.39 16 Total: -1.00 -90.34 308.50 4.64 -85.70 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.51 Total: 29.05 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 3.81 Total: -28.48 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -1.97 Total: -86.13 kcal Atomic # 8 Polarization: -47.37 SS G_CDS: 0.26 Total: -47.12 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -90.34 4.64 -85.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855425725.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.925 kcal (2) G-P(sol) polarization free energy of solvation -90.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds