Wall clock time and date at job start Mon Mar 30 2020 01:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99826 * 2 1 4 4 H 1.48501 * 109.46814 * 273.62298 * 3 2 1 5 5 H 1.48495 * 109.47373 * 33.62337 * 3 2 1 6 6 H 1.48500 * 109.46704 * 153.62468 * 3 2 1 7 7 C 1.38946 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00330 * 341.21423 * 7 2 1 9 9 N 1.37101 * 119.99821 * 161.22262 * 7 2 1 10 10 C 1.34777 * 119.99640 * 320.24495 * 9 7 2 11 11 O 1.21284 * 120.00035 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99814 * 180.02562 * 10 9 7 13 13 C 1.50694 * 109.46948 * 179.97438 * 12 10 9 14 14 C 1.38408 * 119.82488 * 90.00127 * 13 12 10 15 15 C 1.37881 * 120.17257 * 180.25012 * 14 13 12 16 16 C 1.39852 * 119.82839 * 359.52265 * 15 14 13 17 17 C 1.47161 * 120.17467 * 180.20882 * 16 15 14 18 18 O 1.21260 * 119.99790 * 180.29224 * 17 16 15 19 19 C 1.39857 * 119.65177 * 0.49572 * 16 15 14 20 20 C 1.37882 * 119.82497 * 359.73031 * 19 16 15 21 21 C 1.46502 * 120.00224 * 140.25374 * 9 7 2 22 22 C 1.53003 * 117.49881 * 2.38922 * 21 9 7 23 23 C 1.52995 * 117.49503 * 293.73295 * 21 9 7 24 24 H 0.97006 * 120.00279 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47217 * 60.00100 * 12 10 9 26 26 H 1.08997 * 109.46855 * 300.00488 * 12 10 9 27 27 H 1.08003 * 119.91095 * 359.97438 * 14 13 12 28 28 H 1.08008 * 120.08618 * 179.74365 * 15 14 13 29 29 H 1.07998 * 119.99877 * 0.28916 * 17 16 15 30 30 H 1.07997 * 120.08920 * 179.70610 * 19 16 15 31 31 H 1.07997 * 119.91627 * 179.97438 * 20 19 16 32 32 H 1.08999 * 115.54955 * 148.05920 * 21 9 7 33 33 H 1.09004 * 117.49838 * 0.02562 * 22 21 9 34 34 H 1.09000 * 117.50008 * 145.02047 * 22 21 9 35 35 H 1.09003 * 117.49629 * 214.97971 * 23 21 9 36 36 H 1.09000 * 117.50318 * 359.97256 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4189 2.0906 -1.3973 5 1 1.4860 2.6294 0.7752 6 1 3.5818 1.4192 0.6220 7 6 2.0088 -1.2033 0.0005 8 1 1.5120 -2.1136 0.3021 9 7 3.3251 -1.2351 -0.3816 10 6 3.7432 -0.4858 -1.4210 11 8 2.9552 0.2169 -2.0178 12 6 5.1900 -0.5211 -1.8415 13 6 5.3936 0.3980 -3.0182 14 6 5.7266 1.7245 -2.8061 15 6 5.9096 2.5730 -3.8775 16 6 5.7675 2.0876 -5.1814 17 6 5.9655 2.9853 -6.3305 18 8 5.8364 2.5624 -7.4596 19 6 5.4304 0.7460 -5.3874 20 6 5.2462 -0.0887 -4.3055 21 6 4.2770 -2.0836 0.3395 22 6 3.7303 -2.9527 1.4739 23 6 4.5834 -1.7229 1.7945 24 1 -0.4851 0.8401 -0.0004 25 1 5.4615 -1.5382 -2.1241 26 1 5.8174 -0.1947 -1.0121 27 1 5.8392 2.0971 -1.7986 28 1 6.1654 3.6089 -3.7102 29 1 6.2258 4.0209 -6.1681 30 1 5.3143 0.3649 -6.3912 31 1 4.9855 -1.1249 -4.4628 32 1 5.0907 -2.4918 -0.2599 33 1 2.6622 -2.8934 1.6833 34 1 4.1845 -3.9325 1.6210 35 1 5.5986 -1.8942 2.1524 36 1 4.0770 -0.8540 2.2150 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858755388.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:15 Heat of formation + Delta-G solvation = 1.458657 kcal Electronic energy + Delta-G solvation = -20626.358105 eV Core-core repulsion = 17463.425973 eV Total energy + Delta-G solvation = -3162.932132 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.92517 -39.15507 -37.99417 -36.43301 -33.15341 -32.56596 -31.45015 -30.92033 -28.38888 -25.11348 -23.43116 -22.56746 -22.00279 -21.47146 -20.59575 -19.24717 -17.17159 -17.00739 -16.26653 -16.11162 -15.47130 -15.14679 -14.55930 -14.33294 -14.17786 -13.90150 -13.71204 -13.38660 -13.30823 -13.13849 -12.55243 -12.19990 -11.80316 -11.62530 -11.42977 -11.18548 -10.91948 -10.76749 -10.38883 -10.07951 -10.01811 -9.82227 -9.66670 -8.85366 -8.80344 -8.53341 -8.42512 -7.55332 -6.21699 -3.98928 0.71836 1.53459 2.47842 3.22686 3.41897 3.65677 3.74588 3.87927 4.22283 4.34023 4.43452 4.61095 4.83320 4.92713 5.03774 5.12014 5.24234 5.36897 5.44580 5.48492 5.53400 5.57930 5.65655 5.74996 5.79476 5.98410 6.10212 6.12892 6.23574 6.34825 6.46195 6.60521 6.72241 6.79124 7.01117 7.37765 7.79737 7.89895 8.71321 8.84751 9.38316 9.73997 10.82061 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022477 B = 0.005696 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.419866 B = 4914.595760 C = 5499.235581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.089 3.911 3 Si 0.917 3.083 4 H -0.248 1.248 5 H -0.314 1.314 6 H -0.284 1.284 7 C -0.350 4.350 8 H 0.097 0.903 9 N -0.434 5.434 10 C 0.448 3.552 11 O -0.532 6.532 12 C -0.107 4.107 13 C -0.009 4.009 14 C -0.126 4.126 15 C -0.066 4.066 16 C -0.208 4.208 17 C 0.386 3.614 18 O -0.470 6.470 19 C -0.057 4.057 20 C -0.121 4.121 21 C 0.061 3.939 22 C -0.172 4.172 23 C -0.199 4.199 24 H 0.272 0.728 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.124 0.876 28 H 0.129 0.871 29 H 0.101 0.899 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.956 1.288 -2.573 15.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.120 4.120 3 Si 0.750 3.250 4 H -0.174 1.174 5 H -0.245 1.245 6 H -0.210 1.210 7 C -0.475 4.475 8 H 0.115 0.885 9 N -0.154 5.154 10 C 0.238 3.762 11 O -0.415 6.415 12 C -0.147 4.147 13 C -0.010 4.010 14 C -0.144 4.144 15 C -0.085 4.085 16 C -0.209 4.209 17 C 0.246 3.754 18 O -0.344 6.344 19 C -0.075 4.075 20 C -0.139 4.139 21 C -0.044 4.044 22 C -0.210 4.210 23 C -0.238 4.238 24 H 0.082 0.918 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.142 0.858 28 H 0.147 0.853 29 H 0.117 0.883 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 14.285 1.481 -3.492 14.780 hybrid contribution 0.273 0.726 0.476 0.910 sum 14.558 2.207 -3.017 15.030 Atomic orbital electron populations 1.69736 1.06881 1.28259 1.45175 1.25321 0.94977 0.99606 0.92077 0.86275 0.78584 0.81936 0.78229 1.17365 1.24496 1.20997 1.18780 0.83244 0.96021 1.49480 0.88548 1.43141 1.07821 1.39158 1.25283 1.19988 0.89033 0.85279 0.81917 1.90561 1.55216 1.41089 1.54605 1.20811 0.97382 0.99930 0.96600 1.19758 0.92893 0.94107 0.94235 1.20977 1.01084 0.93167 0.99147 1.21263 0.96432 0.99348 0.91418 1.20805 1.08676 0.96086 0.95310 1.24024 0.71237 0.93109 0.87018 1.90499 1.38000 1.79505 1.26386 1.21321 0.94438 0.92445 0.99279 1.20989 1.00663 1.00496 0.91711 1.21834 0.95683 0.98983 0.87929 1.23135 1.01665 0.93895 1.02258 1.23286 0.99941 1.00331 1.00209 0.91784 0.88713 0.88920 0.85788 0.85317 0.88274 0.85271 0.85514 0.87091 0.87095 0.89390 0.89466 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.36 13.96 55.50 0.77 -25.58 16 2 C 0.09 2.60 4.88 -17.47 -0.09 2.52 16 3 Si 0.92 24.22 24.59 -169.99 -4.18 20.04 16 4 H -0.25 -6.86 6.10 56.52 0.34 -6.52 16 5 H -0.31 -8.26 7.11 56.52 0.40 -7.86 16 6 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.35 -9.58 8.77 -14.93 -0.13 -9.71 16 8 H 0.10 2.76 6.95 -52.49 -0.36 2.39 16 9 N -0.43 -9.98 2.56 -107.73 -0.28 -10.26 16 10 C 0.45 10.14 5.88 -10.98 -0.06 10.07 16 11 O -0.53 -14.32 10.92 5.55 0.06 -14.26 16 12 C -0.11 -1.76 4.45 -29.04 -0.13 -1.89 16 13 C -0.01 -0.15 4.38 -104.50 -0.46 -0.61 16 14 C -0.13 -1.91 9.68 -39.65 -0.38 -2.29 16 15 C -0.07 -0.86 9.80 -39.11 -0.38 -1.24 16 16 C -0.21 -2.82 5.87 -105.07 -0.62 -3.44 16 17 C 0.39 4.58 11.46 34.35 0.39 4.97 16 18 O -0.47 -7.18 17.17 5.57 0.10 -7.09 16 19 C -0.06 -0.83 9.60 -39.11 -0.38 -1.21 16 20 C -0.12 -1.87 9.68 -39.65 -0.38 -2.25 16 21 C 0.06 1.08 5.85 -67.93 -0.40 0.69 16 22 C -0.17 -2.81 9.80 -26.69 -0.26 -3.07 16 23 C -0.20 -3.20 10.37 -26.70 -0.28 -3.47 16 24 H 0.27 7.86 8.31 -40.82 -0.34 7.52 16 25 H 0.09 1.29 7.51 -51.93 -0.39 0.90 16 26 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 27 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 28 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 29 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 30 H 0.13 1.79 7.65 -52.49 -0.40 1.38 16 31 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.11 1.57 6.99 -51.93 -0.36 1.21 16 33 H 0.11 2.11 6.49 -51.93 -0.34 1.77 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 308.55 15.07 4.65 4.65 Total: -1.00 -34.97 308.55 -6.85 -41.82 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.43 Total: 1.61 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -3.55 Total: -10.94 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.50 Total: -35.84 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.16 Total: -21.34 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -4.18 Total: 20.04 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.97 -6.85 -41.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858755388.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.282 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds