Wall clock time and date at job start Mon Mar 30 2020 01:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47100 * 21.87443 * 3 2 1 5 5 H 1.09009 * 109.46898 * 55.00008 * 4 3 2 6 6 C 1.52997 * 109.47249 * 174.99906 * 4 3 2 7 7 O 1.42899 * 109.47106 * 54.99890 * 6 4 3 8 8 N 1.46494 * 109.47485 * 295.00191 * 4 3 2 9 9 C 1.34776 * 120.00009 * 154.99621 * 8 4 3 10 10 O 1.21609 * 120.00181 * 0.02562 * 9 8 4 11 11 C 1.47435 * 119.99851 * 180.02562 * 9 8 4 12 12 C 1.39235 * 120.28378 * 356.68142 * 11 9 8 13 13 C 1.38223 * 120.09183 * 180.28231 * 12 11 9 14 14 C 1.38824 * 120.67578 * 359.69536 * 13 12 11 15 15 C 1.37601 * 120.57302 * 0.02562 * 14 13 12 16 16 C 1.40712 * 119.87956 * 0.02562 * 15 14 13 17 17 C 1.40891 * 120.32906 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00234 * 145.79747 * 17 16 15 19 19 C 1.40273 * 119.99571 * 325.79352 * 17 16 15 20 20 N 1.30635 * 120.00253 * 340.74281 * 19 17 16 21 21 Si 1.86798 * 119.99912 * 160.74547 * 19 17 16 22 22 H 1.48507 * 109.47415 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.47275 * 299.99863 * 21 19 17 24 24 H 1.48501 * 109.47305 * 59.99898 * 21 19 17 25 25 H 4.44646 * 5.63215 * 180.02562 * 4 1 2 26 26 H 1.08998 * 109.47110 * 261.87793 * 3 2 1 27 27 H 1.08998 * 109.47285 * 141.87802 * 3 2 1 28 28 H 1.09006 * 109.47288 * 175.00380 * 6 4 3 29 29 H 1.09002 * 109.47269 * 295.00532 * 6 4 3 30 30 H 0.96699 * 114.00037 * 179.97438 * 7 6 4 31 31 H 0.96994 * 119.99831 * 334.99693 * 8 4 3 32 32 H 1.08001 * 119.94893 * 359.97438 * 12 11 9 33 33 H 1.07988 * 119.65914 * 179.72052 * 13 12 11 34 34 H 1.08002 * 119.71756 * 180.02562 * 14 13 12 35 35 H 1.07997 * 120.06577 * 180.02562 * 15 14 13 36 36 H 0.97003 * 120.00071 * 354.83739 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3377 -0.5374 5 1 2.7220 -1.5245 -1.5195 6 6 4.6814 -1.2920 -0.6548 7 8 5.2457 -0.9323 0.6078 8 7 2.7695 -2.4122 0.3801 9 6 2.6432 -3.6744 -0.0753 10 8 2.8510 -3.9215 -1.2477 11 6 2.2531 -4.7555 0.8481 12 6 2.0809 -4.4925 2.2045 13 6 1.7208 -5.5103 3.0675 14 6 1.5206 -6.8008 2.5965 15 6 1.6777 -7.0904 1.2605 16 6 2.0449 -6.0725 0.3610 17 6 2.2088 -6.3585 -1.0088 18 1 1.9455 -5.6188 -1.7502 19 6 2.7142 -7.6042 -1.4094 20 7 3.3752 -8.3448 -0.5602 21 14 2.4422 -8.2040 -3.1575 22 1 3.0709 -9.5388 -3.3263 23 1 0.9851 -8.3053 -3.4250 24 1 3.0550 -7.2447 -4.1111 25 1 -1.0497 -0.0002 -0.0003 26 1 3.0093 0.1460 1.0173 27 1 3.0090 0.8093 -0.6344 28 1 5.0525 -2.2726 -0.9527 29 1 4.9661 -0.5529 -1.4037 30 1 6.2115 -0.8842 0.6076 31 1 2.6042 -2.2151 1.3153 32 1 2.2338 -3.4928 2.5835 33 1 1.5936 -5.2995 4.1190 34 1 1.2391 -7.5842 3.2845 35 1 1.5194 -8.0970 0.9028 36 1 3.5815 -8.0026 0.3237 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868473522.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:51 Heat of formation + Delta-G solvation = -45.094830 kcal Electronic energy + Delta-G solvation = -20605.813720 eV Core-core repulsion = 17440.862877 eV Total energy + Delta-G solvation = -3164.950843 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97989 -39.21628 -37.98959 -36.22625 -35.78549 -34.09416 -32.24499 -31.38422 -30.55238 -27.62931 -27.11806 -24.53524 -22.97053 -22.16824 -21.19612 -19.99450 -19.25705 -18.35999 -18.00793 -17.05686 -16.55025 -16.21045 -15.93354 -15.84191 -15.47396 -15.17493 -14.91216 -14.52836 -14.28392 -14.14557 -13.90546 -13.68984 -12.99816 -12.89400 -12.70784 -12.60218 -12.49693 -12.02521 -11.95197 -11.48703 -11.25657 -11.12397 -10.96687 -10.88458 -10.33608 -9.97402 -9.61652 -9.50232 -9.10463 -6.46670 0.39793 0.89601 1.45680 1.61111 1.76026 1.85021 1.90414 2.25264 2.30446 2.40638 2.73920 3.37035 3.46002 3.56666 3.92227 4.17237 4.21320 4.25948 4.35775 4.43349 4.51488 4.66593 4.72952 4.82434 4.87036 5.03346 5.13527 5.16919 5.41987 5.60379 5.66149 5.71503 5.89103 5.96146 6.19370 6.32494 6.66923 6.72044 6.85142 6.87197 6.92380 7.61200 8.03704 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016107 B = 0.006094 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.002146 B = 4593.354836 C = 5243.997254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.213 4.213 3 C -0.002 4.002 4 C 0.151 3.849 5 H 0.077 0.923 6 C 0.073 3.927 7 O -0.576 6.576 8 N -0.715 5.715 9 C 0.561 3.439 10 O -0.579 6.579 11 C -0.283 4.283 12 C -0.042 4.042 13 C -0.245 4.245 14 C -0.072 4.072 15 C -0.226 4.226 16 C 0.096 3.904 17 C -0.510 4.510 18 H 0.081 0.919 19 C -0.002 4.002 20 N -0.817 5.817 21 Si 1.115 2.885 22 H -0.264 1.264 23 H -0.260 1.260 24 H -0.271 1.271 25 H 0.238 0.762 26 H 0.107 0.893 27 H 0.125 0.875 28 H 0.022 0.978 29 H 0.087 0.913 30 H 0.396 0.604 31 H 0.402 0.598 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.125 0.875 35 H 0.090 0.910 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.531 13.863 2.518 14.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.213 4.213 3 C -0.039 4.039 4 C 0.046 3.954 5 H 0.095 0.905 6 C -0.006 4.006 7 O -0.384 6.384 8 N -0.368 5.368 9 C 0.354 3.646 10 O -0.461 6.461 11 C -0.288 4.288 12 C -0.061 4.061 13 C -0.264 4.264 14 C -0.090 4.090 15 C -0.245 4.245 16 C 0.092 3.908 17 C -0.538 4.538 18 H 0.099 0.901 19 C -0.218 4.218 20 N -0.441 5.441 21 Si 0.932 3.068 22 H -0.188 1.188 23 H -0.184 1.184 24 H -0.196 1.196 25 H 0.254 0.746 26 H 0.125 0.875 27 H 0.143 0.857 28 H 0.041 0.959 29 H 0.104 0.896 30 H 0.245 0.755 31 H 0.239 0.761 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.143 0.857 35 H 0.108 0.892 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.362 12.418 0.880 12.454 hybrid contribution 0.116 1.016 1.299 1.653 sum 0.478 13.433 2.180 13.618 Atomic orbital electron populations 1.25622 0.96988 0.99891 1.00541 1.23561 0.95445 1.01233 1.01099 1.18919 0.84010 0.96221 1.04738 1.21024 0.93394 0.86665 0.94312 0.90519 1.22474 0.92743 0.98861 0.86503 1.86382 1.27058 1.92385 1.32536 1.45746 1.71720 1.06344 1.13006 1.18373 0.76012 0.82951 0.87286 1.90641 1.53030 1.83087 1.19328 1.19837 1.19578 0.95247 0.94133 1.21125 0.94611 0.98774 0.91607 1.20792 1.13036 0.92860 0.99697 1.21150 0.96311 0.97175 0.94382 1.21211 1.10026 0.98587 0.94664 1.17904 0.87994 0.91313 0.93600 1.21091 1.37076 1.01930 0.93700 0.90111 1.28474 0.91121 0.92409 1.09753 1.70500 1.26274 1.38861 1.08480 0.83035 0.78515 0.76695 0.68523 1.18770 1.18429 1.19568 0.74591 0.87505 0.85708 0.95949 0.89552 0.75466 0.76140 0.85390 0.84697 0.85683 0.89181 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.33 19.25 74.32 1.43 -3.90 16 2 C -0.21 -5.62 13.06 31.12 0.41 -5.21 16 3 C 0.00 -0.05 4.97 28.79 0.14 0.09 16 4 C 0.15 4.46 2.34 44.99 0.11 4.56 16 5 H 0.08 2.62 7.58 -2.38 -0.02 2.60 16 6 C 0.07 1.87 6.85 71.98 0.49 2.36 16 7 O -0.58 -12.72 12.83 -148.98 -1.91 -14.63 16 8 N -0.72 -25.71 4.67 -445.79 -2.08 -27.80 16 9 C 0.56 26.79 7.69 86.67 0.67 27.46 16 10 O -0.58 -31.90 13.22 -4.06 -0.05 -31.95 16 11 C -0.28 -14.16 5.92 -19.70 -0.12 -14.28 16 12 C -0.04 -1.76 9.53 22.51 0.21 -1.54 16 13 C -0.24 -9.66 10.03 22.41 0.22 -9.43 16 14 C -0.07 -3.10 10.01 22.26 0.22 -2.87 16 15 C -0.23 -11.65 7.87 22.72 0.18 -11.47 16 16 C 0.10 5.36 5.17 -21.11 -0.11 5.25 16 17 C -0.51 -29.94 7.65 23.41 0.18 -29.76 16 18 H 0.08 5.01 5.92 -2.91 -0.02 4.99 16 19 C 0.00 -0.13 5.04 85.37 0.43 0.30 16 20 N -0.82 -46.21 12.57 21.88 0.28 -45.93 16 21 Si 1.12 47.54 29.98 68.60 2.06 49.60 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 23 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H 0.24 4.29 7.80 -4.43 -0.03 4.25 16 26 H 0.11 2.21 7.73 -2.39 -0.02 2.19 16 27 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.40 5.33 9.12 -74.06 -0.68 4.65 16 31 H 0.40 12.86 6.64 -92.71 -0.62 12.24 16 32 H 0.13 4.27 6.41 -2.91 -0.02 4.25 16 33 H 0.14 4.25 8.06 -2.92 -0.02 4.23 16 34 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 35 H 0.09 4.85 6.94 -2.91 -0.02 4.83 16 36 H 0.28 16.47 6.55 -92.71 -0.61 15.86 16 Total: -1.00 -73.07 315.21 2.74 -70.32 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: -0.01 Total: 38.83 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 4.47 Total: -38.44 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -1.81 Total: -73.73 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -1.96 Total: -46.58 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.06 Total: 49.60 kcal Total: -73.07 2.74 -70.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868473522.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.230 kcal (2) G-P(sol) polarization free energy of solvation -73.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds