Wall clock time and date at job start Mon Mar 30 2020 01:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86805 * 120.00057 * 2 1 4 4 H 1.48491 * 109.47203 * 240.00305 * 3 2 1 5 5 H 1.48504 * 109.46670 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46856 * 119.99843 * 3 2 1 7 7 C 1.37880 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00171 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99566 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46803 * 180.02562 * 9 7 2 11 11 S 1.81405 * 109.47100 * 179.97438 * 10 9 7 12 12 O 1.42108 * 110.54121 * 68.37443 * 11 10 9 13 13 O 1.42100 * 110.54268 * 291.62435 * 11 10 9 14 14 N 1.65596 * 104.45125 * 179.97438 * 11 10 9 15 15 C 1.46508 * 119.99969 * 65.00147 * 14 11 10 16 16 C 1.51872 * 108.55759 * 90.94768 * 15 14 11 17 17 C 1.53029 * 110.76080 * 187.50962 * 16 15 14 18 18 C 1.51376 * 108.61350 * 274.28983 * 17 16 15 19 19 C 1.29521 * 120.35897 * 71.92013 * 18 17 16 20 20 C 1.51368 * 120.36592 * 359.97438 * 19 18 17 21 21 C 1.51846 * 108.65224 * 215.00201 * 15 14 11 22 22 H 0.97001 * 120.00427 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47510 * 60.00131 * 9 7 2 24 24 H 1.09000 * 109.47131 * 299.99602 * 9 7 2 25 25 H 1.08997 * 109.47571 * 59.99635 * 10 9 7 26 26 H 1.08999 * 109.47530 * 299.99345 * 10 9 7 27 27 H 0.96994 * 120.00635 * 245.00407 * 14 11 10 28 28 H 1.09003 * 108.60300 * 333.01940 * 15 14 11 29 29 H 1.09002 * 109.19818 * 67.18585 * 16 15 14 30 30 H 1.09003 * 109.23746 * 307.85451 * 16 15 14 31 31 H 1.08996 * 109.61401 * 154.54781 * 17 16 15 32 32 H 1.09007 * 109.61034 * 34.02360 * 17 16 15 33 33 H 1.07998 * 119.81373 * 251.89593 * 18 17 16 34 34 H 1.08006 * 119.81476 * 179.97438 * 19 18 17 35 35 H 1.09005 * 109.61186 * 47.83692 * 20 19 18 36 36 H 1.09003 * 109.61765 * 168.18474 * 20 19 18 37 37 H 1.09007 * 109.22116 * 52.20474 * 21 15 14 38 38 H 1.08998 * 109.21839 * 292.86391 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 16 1.3383 -5.2330 0.0002 12 8 0.6639 -5.4200 -1.2365 13 8 0.6648 -5.4193 1.2375 14 7 2.5205 -6.3927 -0.0006 15 6 3.4197 -6.5228 1.1487 16 6 2.8144 -7.5151 2.1262 17 6 3.6167 -7.5517 3.4288 18 6 4.7644 -8.5245 3.2622 19 6 5.7737 -8.2233 2.5083 20 6 5.8181 -6.8950 1.7838 21 6 4.7951 -6.9245 0.6462 22 1 -0.4851 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8902 24 1 0.6248 -2.5571 0.8897 25 1 2.8720 -3.6043 0.8894 26 1 2.8719 -3.6044 -0.8905 27 1 2.6177 -6.9858 -0.7618 28 1 3.4978 -5.5532 1.6407 29 1 2.8155 -8.5078 1.6760 30 1 1.7875 -7.2225 2.3453 31 1 2.9739 -7.8805 4.2453 32 1 4.0081 -6.5576 3.6454 33 1 4.7417 -9.4747 3.7750 34 1 6.5880 -8.9238 2.3961 35 1 5.5706 -6.0914 2.4775 36 1 6.8165 -6.7330 1.3775 37 1 5.1078 -6.2323 -0.1357 38 1 4.7462 -7.9322 0.2336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885835298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:39 Heat of formation + Delta-G solvation = -104.597936 kcal Electronic energy + Delta-G solvation = -19524.906060 eV Core-core repulsion = 16492.818920 eV Total energy + Delta-G solvation = -3032.087140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.92797 -38.10118 -36.99090 -35.89054 -35.83220 -33.12755 -32.69399 -31.10504 -27.59242 -25.52946 -24.87102 -23.61550 -21.65332 -20.29607 -19.12204 -18.78107 -18.29111 -17.74132 -17.00541 -16.76655 -16.51754 -16.13984 -15.23962 -15.07975 -14.84378 -14.44557 -14.30956 -13.82764 -13.74255 -13.45194 -13.18208 -13.08431 -12.90185 -12.81076 -12.74844 -12.67631 -12.23821 -12.17167 -12.01619 -11.97369 -11.71564 -11.53543 -11.15990 -11.10511 -10.63296 -10.35619 -9.85916 -8.25193 -6.39446 -0.65949 1.41535 1.45001 1.50688 1.53146 1.86007 2.38804 2.81951 3.08260 3.28232 3.63705 3.91512 3.98814 4.08582 4.10308 4.17726 4.29227 4.32749 4.51469 4.56967 4.67440 4.76170 4.90054 4.94062 4.98365 5.19139 5.27602 5.27882 5.29117 5.33876 5.36512 5.49677 5.68777 5.87730 6.06678 6.12353 6.17580 6.74091 7.30841 8.86931 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022662 B = 0.004735 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.247304 B = 5911.958218 C = 6555.451855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.020 3.980 10 C -0.589 4.589 11 S 2.617 3.383 12 O -1.002 7.002 13 O -0.993 6.993 14 N -1.106 6.106 15 C 0.148 3.852 16 C -0.136 4.136 17 C -0.093 4.093 18 C -0.163 4.163 19 C -0.159 4.159 20 C -0.094 4.094 21 C -0.115 4.115 22 H 0.267 0.733 23 H 0.005 0.995 24 H 0.007 0.993 25 H 0.141 0.859 26 H 0.143 0.857 27 H 0.424 0.576 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.315 -16.388 3.912 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.095 0.905 9 C -0.019 4.019 10 C -0.721 4.721 11 S 2.714 3.286 12 O -0.993 6.993 13 O -0.983 6.983 14 N -0.866 5.866 15 C 0.042 3.958 16 C -0.175 4.175 17 C -0.131 4.131 18 C -0.181 4.181 19 C -0.176 4.176 20 C -0.132 4.132 21 C -0.154 4.154 22 H 0.076 0.924 23 H 0.023 0.977 24 H 0.025 0.975 25 H 0.159 0.841 26 H 0.161 0.839 27 H 0.261 0.739 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.178 -16.361 4.049 21.394 hybrid contribution 0.280 0.941 -0.314 1.031 sum 13.457 -15.420 3.735 20.804 Atomic orbital electron populations 1.70094 1.08115 1.28388 1.50837 1.26116 0.95827 1.03880 0.94350 0.85369 0.78142 0.77297 0.79480 1.18761 1.21040 1.18704 1.21493 0.94000 0.90763 1.51612 0.90534 1.18813 0.93611 0.93124 0.96312 1.30343 1.12824 1.16615 1.12288 1.04553 0.74787 0.76535 0.72769 1.93499 1.73220 1.85850 1.46701 1.93502 1.72739 1.85326 1.46721 1.55502 1.52228 1.50385 1.28535 1.20766 0.90012 0.99975 0.85087 1.21884 0.99688 1.00318 0.95597 1.20784 0.96064 0.99442 0.96824 1.22635 0.95542 0.99847 1.00079 1.22707 0.98669 0.98253 0.98014 1.20830 0.99752 0.95840 0.96807 1.21588 0.91607 1.03450 0.98717 0.92403 0.97662 0.97507 0.84106 0.83867 0.73922 0.90465 0.90743 0.92084 0.90897 0.90816 0.86624 0.86161 0.91016 0.89444 0.89665 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.97 13.29 21.45 0.28 -56.69 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 3 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.54 -29.77 9.11 25.60 0.23 -29.54 16 8 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 9 C 0.02 1.06 4.98 29.85 0.15 1.21 16 10 C -0.59 -21.94 5.88 71.98 0.42 -21.51 16 11 S 2.62 92.64 5.38 -56.49 -0.30 92.33 16 12 O -1.00 -42.15 18.08 -127.65 -2.31 -44.45 16 13 O -0.99 -41.08 16.50 -127.65 -2.11 -43.18 16 14 N -1.11 -26.57 5.28 -172.52 -0.91 -27.48 16 15 C 0.15 3.11 2.11 44.24 0.09 3.20 16 16 C -0.14 -2.98 5.18 30.23 0.16 -2.82 16 17 C -0.09 -1.72 5.62 30.07 0.17 -1.55 16 18 C -0.16 -2.49 9.34 27.37 0.26 -2.23 16 19 C -0.16 -2.17 9.34 27.37 0.26 -1.91 16 20 C -0.09 -1.29 5.62 30.07 0.17 -1.12 16 21 C -0.11 -1.74 5.13 30.22 0.15 -1.59 16 22 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 23 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 24 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.14 4.53 7.39 -2.39 -0.02 4.51 16 26 H 0.14 4.65 8.14 -2.39 -0.02 4.63 16 27 H 0.42 8.22 8.77 -96.75 -0.85 7.37 16 28 H 0.08 1.65 6.80 -2.39 -0.02 1.63 16 29 H 0.07 1.48 7.86 -2.39 -0.02 1.46 16 30 H 0.06 1.68 6.80 -2.39 -0.02 1.67 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.36 6.68 -2.38 -0.02 1.34 16 33 H 0.12 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.12 1.29 8.06 -2.91 -0.02 1.27 16 35 H 0.07 1.06 6.68 -2.38 -0.02 1.05 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.08 1.09 7.86 -2.39 -0.02 1.07 16 Total: -1.00 -73.96 316.99 -0.60 -74.56 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.20 Total: 17.47 kcal Atomic # 6 Polarization: -60.12 SS G_CDS: 2.52 Total: -57.60 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -0.63 Total: -84.17 kcal Atomic # 8 Polarization: -83.22 SS G_CDS: -4.41 Total: -87.64 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 92.64 SS G_CDS: -0.30 Total: 92.33 kcal Total: -73.96 -0.60 -74.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885835298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.036 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds