Wall clock time and date at job start Mon Mar 30 2020 01:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86801 * 119.99860 * 2 1 4 4 H 1.48504 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47414 * 300.00289 * 3 2 1 6 6 H 1.48498 * 109.46858 * 60.00457 * 3 2 1 7 7 C 1.40227 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00528 * 197.90037 * 7 2 1 9 9 C 1.41110 * 119.99683 * 17.89595 * 7 2 1 10 10 C 1.40893 * 120.10379 * 204.64296 * 9 7 2 11 11 C 1.36317 * 119.89018 * 179.97438 * 10 9 7 12 12 C 1.40007 * 120.11036 * 359.97438 * 11 10 9 13 13 C 1.47638 * 119.90023 * 179.97438 * 12 11 10 14 14 O 1.21595 * 119.99532 * 0.27803 * 13 12 11 15 15 N 1.34771 * 120.00377 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99986 * 180.02562 * 15 13 12 17 17 C 1.53008 * 119.80663 * 250.22848 * 16 15 13 18 18 C 1.53000 * 60.65072 * 247.68838 * 17 16 15 19 19 H 1.08997 * 119.80642 * 112.31500 * 18 17 16 20 20 C 1.54480 * 118.06411 * 269.58706 * 18 17 16 21 21 O 1.44423 * 104.80002 * 86.83522 * 20 18 17 22 22 C 1.46764 * 105.42228 * 319.29054 * 21 20 18 23 23 C 1.40016 * 120.20609 * 0.27846 * 12 11 10 24 24 C 1.36318 * 120.11083 * 359.48204 * 23 12 11 25 25 H 0.96995 * 120.00217 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.04921 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.94459 * 180.02562 * 11 10 9 28 28 H 0.96997 * 119.99855 * 359.97438 * 15 13 12 29 29 H 1.08998 * 117.42855 * 355.36854 * 17 16 15 30 30 H 1.08994 * 117.42910 * 140.00904 * 17 16 15 31 31 H 1.09003 * 110.37044 * 205.65898 * 20 18 17 32 32 H 1.08993 * 110.37716 * 328.00047 * 20 18 17 33 33 H 1.09006 * 110.29087 * 282.46604 * 22 21 20 34 34 H 1.09000 * 111.53777 * 159.38910 * 22 21 20 35 35 H 1.08004 * 119.94670 * 179.71834 * 23 12 11 36 36 H 1.07995 * 120.05467 * 180.27809 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7005 1.3464 0.0006 5 1 1.8817 2.3965 -1.2124 6 1 1.8817 2.3964 1.2126 7 6 2.0077 -1.2144 -0.0005 8 1 3.0485 -1.2371 0.2869 9 6 1.3533 -2.4067 -0.3766 10 6 1.8267 -3.6495 0.0886 11 6 1.1909 -4.7986 -0.2770 12 6 0.0690 -4.7452 -1.1129 13 6 -0.6156 -5.9926 -1.5064 14 8 -0.2080 -7.0638 -1.1005 15 7 -1.6954 -5.9436 -2.3114 16 6 -2.3750 -7.1814 -2.7014 17 6 -2.2810 -7.6782 -4.1455 18 6 -3.6266 -7.1878 -3.6073 19 1 -4.0664 -6.2716 -4.0014 20 6 -4.5645 -8.2210 -2.9446 21 8 -4.1476 -8.2646 -1.5625 22 6 -2.6812 -8.2157 -1.5955 23 6 -0.4018 -3.5128 -1.5820 24 6 0.2243 -2.3580 -1.2180 25 1 -0.4850 0.8400 0.0004 26 1 2.6912 -3.6915 0.7344 27 1 1.5527 -5.7517 0.0795 28 1 -2.0230 -5.0888 -2.6319 29 1 -1.7647 -7.0407 -4.8632 30 1 -2.1631 -8.7506 -4.3009 31 1 -5.6017 -7.8938 -3.0178 32 1 -4.4406 -9.1990 -3.4093 33 1 -2.2764 -9.1911 -1.8656 34 1 -2.2703 -7.8843 -0.6418 35 1 -1.2649 -3.4768 -2.2303 36 1 -0.1424 -1.4076 -1.5767 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894183662.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:41 Heat of formation + Delta-G solvation = -30.796541 kcal Electronic energy + Delta-G solvation = -20111.127439 eV Core-core repulsion = 16946.796616 eV Total energy + Delta-G solvation = -3164.330823 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.45531 -38.65392 -37.04694 -34.99536 -33.91878 -32.56917 -30.14899 -29.48461 -28.30462 -25.94522 -25.39412 -22.61073 -21.30964 -21.07744 -20.25175 -19.25725 -17.58941 -17.29431 -16.32773 -15.66219 -15.42086 -15.29066 -14.53595 -14.09902 -14.05635 -13.95661 -13.43228 -13.15065 -12.83153 -12.54426 -12.22873 -12.06403 -11.92712 -11.41809 -11.31317 -11.22929 -10.98943 -10.87430 -10.67561 -10.54996 -10.07397 -9.70944 -9.60291 -9.38999 -9.00678 -8.55063 -7.76901 -7.59275 -7.07969 -4.64703 2.16248 2.87001 2.92655 2.98226 2.99689 3.31747 3.41823 3.70894 3.81849 3.99629 4.35825 4.45874 4.52316 4.84424 4.96083 5.20453 5.40819 5.52610 5.54637 5.58502 5.75983 5.90003 5.97266 5.99262 6.04900 6.27509 6.60309 6.72814 6.78496 6.86571 7.00689 7.08654 7.39049 7.59716 7.73565 7.81815 8.02467 8.14549 8.35527 8.58742 8.70658 8.98248 9.83939 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.036472 B = 0.003739 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.534737 B = 7486.226017 C = 7856.120917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.441 4.441 8 H 0.086 0.914 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.020 4.020 12 C -0.286 4.286 13 C 0.577 3.423 14 O -0.569 6.569 15 N -0.703 5.703 16 C 0.080 3.920 17 C -0.146 4.146 18 C -0.201 4.201 19 H 0.124 0.876 20 C 0.075 3.925 21 O -0.379 6.379 22 C 0.086 3.914 23 C -0.062 4.062 24 C -0.178 4.178 25 H 0.287 0.713 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.401 0.599 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.100 -6.224 -7.125 11.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.468 4.468 8 H 0.104 0.896 9 C 0.125 3.875 10 C -0.258 4.258 11 C -0.039 4.039 12 C -0.290 4.290 13 C 0.373 3.627 14 O -0.451 6.451 15 N -0.355 5.355 16 C -0.009 4.009 17 C -0.186 4.186 18 C -0.220 4.220 19 H 0.142 0.858 20 C -0.002 4.002 21 O -0.298 6.298 22 C 0.009 3.991 23 C -0.082 4.082 24 C -0.197 4.197 25 H 0.098 0.902 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.237 0.763 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.106 0.894 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.159 -6.813 -6.591 11.304 hybrid contribution 0.176 1.418 -0.471 1.505 sum -5.983 -5.395 -7.062 10.713 Atomic orbital electron populations 1.69748 1.07953 1.30051 1.31554 1.26116 0.94810 1.01959 0.91857 0.86163 0.81128 0.80130 0.78901 1.18015 1.19355 1.19621 1.19905 0.98490 0.91193 1.37230 0.89594 1.17801 0.90330 0.92214 0.87112 1.20718 1.04649 0.92609 1.07841 1.20354 0.92778 0.97215 0.93554 1.18823 1.04662 0.90754 1.14792 1.18613 0.78104 0.89816 0.76191 1.90621 1.66346 1.31546 1.56588 1.45137 1.30953 1.06654 1.52722 1.22214 0.98074 0.90178 0.90430 1.23611 0.96558 1.02145 0.96241 1.24648 0.89960 1.02864 1.04506 0.85811 1.22833 0.98215 0.96820 0.82317 1.89563 1.20799 1.95244 1.24177 1.23417 0.79601 0.96446 0.99626 1.20464 0.97305 0.92630 0.97756 1.20974 0.99913 0.96887 1.01953 0.90213 0.88304 0.88008 0.76253 0.87625 0.88227 0.88590 0.91967 0.90873 0.86863 0.89448 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.26 10.95 55.56 0.61 -17.65 16 2 C 0.07 1.71 5.14 -17.31 -0.09 1.62 16 3 Si 0.91 17.03 29.60 -169.99 -5.03 12.00 16 4 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 7 C -0.44 -10.84 9.04 -37.75 -0.34 -11.18 16 8 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 9 C 0.13 3.24 5.58 -106.80 -0.60 2.65 16 10 C -0.24 -5.72 9.73 -39.27 -0.38 -6.10 16 11 C -0.02 -0.46 9.52 -39.61 -0.38 -0.84 16 12 C -0.29 -6.46 5.89 -104.73 -0.62 -7.07 16 13 C 0.58 12.11 7.49 -12.43 -0.09 12.01 16 14 O -0.57 -13.04 14.53 5.28 0.08 -12.96 16 15 N -0.70 -11.99 5.63 -47.15 -0.27 -12.26 16 16 C 0.08 1.19 3.17 -130.25 -0.41 0.77 16 17 C -0.15 -1.70 10.04 -26.73 -0.27 -1.97 16 18 C -0.20 -2.27 7.21 -89.05 -0.64 -2.91 16 19 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 20 C 0.08 0.82 7.45 37.93 0.28 1.10 16 21 O -0.38 -5.64 11.72 -35.23 -0.41 -6.05 16 22 C 0.09 1.33 6.67 37.93 0.25 1.58 16 23 C -0.06 -1.37 9.47 -39.61 -0.38 -1.74 16 24 C -0.18 -4.31 8.64 -39.27 -0.34 -4.65 16 25 H 0.29 6.08 8.29 -40.82 -0.34 5.75 16 26 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 27 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 28 H 0.40 6.17 6.83 -40.82 -0.28 5.89 16 29 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.11 2.04 6.70 -51.93 -0.35 1.69 16 35 H 0.09 1.63 6.37 -52.48 -0.33 1.29 16 36 H 0.12 2.95 6.15 -52.49 -0.32 2.62 16 LS Contribution 305.58 15.07 4.61 4.61 Total: -1.00 -28.06 305.58 -8.61 -36.67 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -4.19 Total: 12.38 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -4.00 Total: -16.74 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 0.34 Total: -29.91 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.34 Total: -19.01 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.06 -8.61 -36.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894183662.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.874 kcal (2) G-P(sol) polarization free energy of solvation -28.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds