Wall clock time and date at job start Mon Mar 30 2020 01:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86801 * 119.99860 * 2 1 4 4 H 1.48504 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47414 * 300.00289 * 3 2 1 6 6 H 1.48498 * 109.46858 * 60.00457 * 3 2 1 7 7 C 1.40227 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00528 * 197.90037 * 7 2 1 9 9 C 1.41110 * 119.99683 * 17.89595 * 7 2 1 10 10 C 1.40893 * 120.10379 * 204.64296 * 9 7 2 11 11 C 1.36317 * 119.89018 * 179.97438 * 10 9 7 12 12 C 1.40007 * 120.11036 * 359.97438 * 11 10 9 13 13 C 1.47638 * 119.90023 * 179.97438 * 12 11 10 14 14 O 1.21595 * 119.99532 * 0.27803 * 13 12 11 15 15 N 1.34771 * 120.00377 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99986 * 180.02562 * 15 13 12 17 17 C 1.53008 * 119.80663 * 250.22848 * 16 15 13 18 18 C 1.53000 * 60.65072 * 247.68838 * 17 16 15 19 19 H 1.08997 * 119.80642 * 112.31500 * 18 17 16 20 20 C 1.54480 * 118.06411 * 269.58706 * 18 17 16 21 21 O 1.44423 * 104.80002 * 86.83522 * 20 18 17 22 22 C 1.46764 * 105.42228 * 319.29054 * 21 20 18 23 23 C 1.40016 * 120.20609 * 0.27846 * 12 11 10 24 24 C 1.36318 * 120.11083 * 359.48204 * 23 12 11 25 25 H 0.96995 * 120.00217 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.04921 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.94459 * 180.02562 * 11 10 9 28 28 H 0.96997 * 119.99855 * 359.97438 * 15 13 12 29 29 H 1.08998 * 117.42855 * 355.36854 * 17 16 15 30 30 H 1.08994 * 117.42910 * 140.00904 * 17 16 15 31 31 H 1.09003 * 110.37044 * 205.65898 * 20 18 17 32 32 H 1.08993 * 110.37716 * 328.00047 * 20 18 17 33 33 H 1.09006 * 110.29087 * 282.46604 * 22 21 20 34 34 H 1.09000 * 111.53777 * 159.38910 * 22 21 20 35 35 H 1.08004 * 119.94670 * 179.71834 * 23 12 11 36 36 H 1.07995 * 120.05467 * 180.27809 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7005 1.3464 0.0006 5 1 1.8817 2.3965 -1.2124 6 1 1.8817 2.3964 1.2126 7 6 2.0077 -1.2144 -0.0005 8 1 3.0485 -1.2371 0.2869 9 6 1.3533 -2.4067 -0.3766 10 6 1.8267 -3.6495 0.0886 11 6 1.1909 -4.7986 -0.2770 12 6 0.0690 -4.7452 -1.1129 13 6 -0.6156 -5.9926 -1.5064 14 8 -0.2080 -7.0638 -1.1005 15 7 -1.6954 -5.9436 -2.3114 16 6 -2.3750 -7.1814 -2.7014 17 6 -2.2810 -7.6782 -4.1455 18 6 -3.6266 -7.1878 -3.6073 19 1 -4.0664 -6.2716 -4.0014 20 6 -4.5645 -8.2210 -2.9446 21 8 -4.1476 -8.2646 -1.5625 22 6 -2.6812 -8.2157 -1.5955 23 6 -0.4018 -3.5128 -1.5820 24 6 0.2243 -2.3580 -1.2180 25 1 -0.4850 0.8400 0.0004 26 1 2.6912 -3.6915 0.7344 27 1 1.5527 -5.7517 0.0795 28 1 -2.0230 -5.0888 -2.6319 29 1 -1.7647 -7.0407 -4.8632 30 1 -2.1631 -8.7506 -4.3009 31 1 -5.6017 -7.8938 -3.0178 32 1 -4.4406 -9.1990 -3.4093 33 1 -2.2764 -9.1911 -1.8656 34 1 -2.2703 -7.8843 -0.6418 35 1 -1.2649 -3.4768 -2.2303 36 1 -0.1424 -1.4076 -1.5767 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894183662.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:40 Heat of formation + Delta-G solvation = -47.958437 kcal Electronic energy + Delta-G solvation = -20111.871635 eV Core-core repulsion = 16946.796616 eV Total energy + Delta-G solvation = -3165.075018 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.61716 -40.21529 -38.77196 -36.17833 -35.68942 -33.96026 -31.86926 -31.31070 -29.40522 -27.67921 -26.40130 -24.22678 -22.87183 -22.40817 -21.58534 -20.69728 -19.38740 -18.68566 -17.71181 -17.23141 -16.64143 -16.41031 -15.88628 -15.76582 -15.55674 -15.25727 -15.08664 -14.53990 -14.25537 -13.94101 -13.79368 -13.54395 -13.31227 -13.06101 -12.86459 -12.63345 -12.39624 -12.16360 -11.92156 -11.77430 -11.63506 -11.39525 -11.13403 -10.78194 -10.58753 -9.88304 -9.59365 -9.42125 -8.81242 -6.50248 0.40998 1.13262 1.37980 1.41442 1.55232 2.04989 2.11154 2.16594 2.39845 2.77137 2.97892 3.35529 3.46081 3.66909 3.91308 3.99669 4.13598 4.27893 4.38174 4.42939 4.45377 4.71287 4.73811 4.78016 4.89105 4.90606 5.01504 5.07694 5.13855 5.27784 5.54442 5.57487 5.61238 5.79880 5.91969 5.97604 6.20756 6.52035 6.63619 6.75364 6.86801 7.39443 8.14158 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.036472 B = 0.003739 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.534737 B = 7486.226017 C = 7856.120917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.257 1.257 5 H -0.259 1.259 6 H -0.264 1.264 7 C -0.472 4.472 8 H 0.086 0.914 9 C 0.102 3.898 10 C -0.253 4.253 11 C -0.031 4.031 12 C -0.294 4.294 13 C 0.577 3.423 14 O -0.594 6.594 15 N -0.689 5.689 16 C 0.032 3.968 17 C -0.130 4.130 18 C -0.170 4.170 19 H 0.143 0.857 20 C 0.067 3.933 21 O -0.400 6.400 22 C 0.087 3.913 23 C -0.054 4.054 24 C -0.198 4.198 25 H 0.297 0.703 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.409 0.591 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.388 -5.937 -8.948 13.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.184 1.184 6 H -0.189 1.189 7 C -0.500 4.500 8 H 0.104 0.896 9 C 0.098 3.902 10 C -0.272 4.272 11 C -0.050 4.050 12 C -0.299 4.299 13 C 0.371 3.629 14 O -0.478 6.478 15 N -0.340 5.340 16 C -0.056 4.056 17 C -0.168 4.168 18 C -0.189 4.189 19 H 0.161 0.839 20 C -0.009 4.009 21 O -0.320 6.320 22 C 0.010 3.990 23 C -0.073 4.073 24 C -0.217 4.217 25 H 0.109 0.891 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.247 0.753 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.139 0.861 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.488 -6.541 -8.442 13.043 hybrid contribution 0.461 1.211 0.072 1.298 sum -7.027 -5.330 -8.370 12.159 Atomic orbital electron populations 1.69764 1.09284 1.31636 1.31451 1.26936 0.95527 1.04865 0.90754 0.85060 0.79461 0.75434 0.79277 1.18012 1.18374 1.18862 1.20161 0.98808 0.92244 1.38741 0.89614 1.18147 0.91220 0.92910 0.87885 1.20860 1.05235 0.92727 1.08417 1.20508 0.93373 0.97129 0.94014 1.19134 1.04480 0.92002 1.14275 1.18376 0.79028 0.88703 0.76816 1.90602 1.67388 1.32077 1.57703 1.44902 1.29562 1.08242 1.51270 1.22476 1.01664 0.89647 0.91856 1.23721 0.96419 1.03366 0.93331 1.24829 0.89002 1.03405 1.01685 0.83896 1.23177 0.99196 0.98034 0.80454 1.89539 1.20229 1.95424 1.26808 1.23226 0.80212 0.97202 0.98324 1.20714 0.97702 0.91576 0.97301 1.21010 1.00525 0.97384 1.02803 0.89139 0.87729 0.87766 0.75326 0.86795 0.86567 0.86304 0.89830 0.89817 0.90452 0.86071 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.97 10.95 21.87 0.24 -37.73 16 2 C 0.04 1.77 5.14 85.35 0.44 2.20 16 3 Si 0.99 34.48 29.60 68.60 2.03 36.51 16 4 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 5 H -0.26 -8.61 7.11 99.48 0.71 -7.91 16 6 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 7 C -0.47 -23.78 9.04 23.46 0.21 -23.57 16 8 H 0.09 4.15 7.91 -2.91 -0.02 4.12 16 9 C 0.10 5.27 5.58 -21.28 -0.12 5.15 16 10 C -0.25 -12.54 9.73 22.47 0.22 -12.33 16 11 C -0.03 -1.49 9.52 22.25 0.21 -1.28 16 12 C -0.29 -13.42 5.89 -19.94 -0.12 -13.54 16 13 C 0.58 24.18 7.49 86.73 0.65 24.83 16 14 O -0.59 -27.60 14.53 -4.02 -0.06 -27.66 16 15 N -0.69 -22.64 5.63 -421.34 -2.37 -25.01 16 16 C 0.03 0.88 3.17 4.62 0.01 0.89 16 17 C -0.13 -2.57 10.04 30.60 0.31 -2.27 16 18 C -0.17 -3.22 7.21 -9.78 -0.07 -3.29 16 19 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 20 C 0.07 1.24 7.45 72.49 0.54 1.78 16 21 O -0.40 -11.30 11.72 -148.98 -1.75 -13.04 16 22 C 0.09 2.65 6.67 72.48 0.48 3.13 16 23 C -0.05 -2.36 9.47 22.25 0.21 -2.15 16 24 C -0.20 -9.75 8.64 22.47 0.19 -9.55 16 25 H 0.30 12.50 8.29 -92.71 -0.77 11.74 16 26 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 27 H 0.10 4.84 7.63 -2.91 -0.02 4.82 16 28 H 0.41 11.76 6.83 -92.71 -0.63 11.12 16 29 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 34 H 0.08 2.88 6.70 -2.39 -0.02 2.87 16 35 H 0.12 4.33 6.37 -2.91 -0.02 4.31 16 36 H 0.11 5.67 6.15 -2.91 -0.02 5.65 16 Total: -1.00 -62.17 305.58 1.75 -60.42 By element: Atomic # 1 Polarization: 36.02 SS G_CDS: 0.48 Total: 36.50 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 3.17 Total: -29.98 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -2.13 Total: -62.74 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -1.80 Total: -40.71 kcal Atomic # 14 Polarization: 34.48 SS G_CDS: 2.03 Total: 36.51 kcal Total: -62.17 1.75 -60.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894183662.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.459 kcal (2) G-P(sol) polarization free energy of solvation -62.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds