Wall clock time and date at job start Mon Mar 30 2020 01:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38237 * 120.00035 * 2 1 4 4 C 1.38231 * 120.00396 * 180.02562 * 3 2 1 5 5 C 1.38238 * 119.99558 * 359.95254 * 4 3 2 6 6 C 1.50704 * 119.99481 * 180.02562 * 5 4 3 7 7 H 1.08994 * 110.54146 * 1.39527 * 6 5 4 8 8 C 1.54228 * 110.53881 * 124.45264 * 6 5 4 9 9 C 1.51312 * 103.55616 * 118.82796 * 8 6 5 10 10 O 1.21233 * 125.39940 * 179.89908 * 9 8 6 11 11 N 1.33879 * 109.20866 * 359.63118 * 9 8 6 12 12 C 1.46497 * 122.76265 * 180.24223 * 11 9 8 13 13 C 1.50699 * 109.47170 * 89.97773 * 12 11 9 14 14 H 1.08007 * 119.99857 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00110 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99754 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99971 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47017 * 90.00427 * 17 15 13 19 19 H 1.48502 * 109.47368 * 210.00565 * 17 15 13 20 20 H 1.48502 * 109.47306 * 330.00528 * 17 15 13 21 21 C 1.33875 * 114.47007 * 0.24539 * 11 9 8 22 22 O 1.21230 * 125.39255 * 179.97438 * 21 11 9 23 23 C 1.38229 * 120.00098 * 0.27895 * 5 4 3 24 24 C 1.38230 * 120.00058 * 359.53457 * 23 5 4 25 25 H 1.08999 * 109.47388 * 90.00096 * 1 2 3 26 26 H 1.09005 * 109.46808 * 209.99970 * 1 2 3 27 27 H 1.08994 * 109.47072 * 329.99701 * 1 2 3 28 28 H 1.08007 * 119.99620 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.00404 * 179.97438 * 4 3 2 30 30 H 1.09004 * 110.71582 * 0.25988 * 8 6 5 31 31 H 1.08993 * 110.49801 * 237.29275 * 8 6 5 32 32 H 1.09004 * 109.47007 * 209.97391 * 12 11 9 33 33 H 1.08991 * 109.47531 * 329.97608 * 12 11 9 34 34 H 0.96999 * 119.99577 * 179.97438 * 16 15 13 35 35 H 1.08003 * 119.99902 * 179.72297 * 23 5 4 36 36 H 1.08008 * 120.00021 * 180.20971 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0001 6 6 5.7787 0.0002 -0.0001 7 1 6.1611 1.0205 0.0244 8 6 6.3199 -0.8164 1.1911 9 6 7.1086 -1.9263 0.5312 10 8 7.7085 -2.8039 1.1140 11 7 7.0341 -1.7892 -0.7985 12 6 7.6896 -2.7118 -1.7286 13 6 6.7477 -3.8390 -2.0653 14 1 5.7595 -3.8652 -1.6303 15 6 7.1472 -4.8363 -2.9296 16 7 8.3504 -4.8041 -3.4596 17 14 5.9800 -6.2339 -3.3464 18 1 5.1736 -5.8666 -4.5380 19 1 6.7623 -7.4621 -3.6376 20 1 5.0762 -6.4841 -2.1950 21 6 6.3113 -0.7393 -1.2080 22 8 6.1150 -0.4299 -2.3636 23 6 3.5805 -1.1970 -0.0049 24 6 2.1982 -1.1971 -0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 1.6581 2.1325 -0.0004 29 1 4.1205 2.1325 -0.0010 30 1 5.5004 -1.2267 1.7814 31 1 6.9703 -0.2004 1.8120 32 1 7.9585 -2.1785 -2.6404 33 1 8.5894 -3.1164 -1.2654 34 1 8.6315 -5.5059 -4.0674 35 1 4.1206 -2.1323 -0.0091 36 1 1.6582 -2.1325 -0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899897952.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:30 Heat of formation + Delta-G solvation = -49.595371 kcal Electronic energy + Delta-G solvation = -20681.122161 eV Core-core repulsion = 17515.976160 eV Total energy + Delta-G solvation = -3165.146001 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.42223 -39.20686 -37.81908 -35.28638 -34.46007 -32.82142 -31.31703 -30.89615 -27.84816 -26.85858 -24.95736 -23.23831 -22.77969 -21.90347 -20.58126 -18.83143 -17.16408 -16.69749 -16.14428 -15.96827 -15.34375 -15.02228 -14.85875 -14.56343 -14.01493 -13.70958 -13.56965 -13.43761 -13.34012 -13.22928 -12.69097 -12.32464 -12.23355 -11.89492 -11.63655 -11.52913 -11.14517 -10.99849 -10.91935 -10.76984 -10.42425 -10.01011 -9.80289 -9.37700 -8.89965 -8.60531 -8.53451 -8.45866 -6.15665 -4.20934 1.25750 1.42602 2.10336 3.25643 3.27845 3.33318 3.38997 3.46113 3.73880 4.36852 4.45943 4.59802 4.60824 4.78119 4.83330 4.92274 5.03291 5.19294 5.21088 5.32719 5.47065 5.47820 5.63031 5.68561 5.72010 5.81155 6.04752 6.08154 6.40057 6.51472 6.57819 6.58748 6.86893 6.99690 7.19395 7.76667 7.81681 8.01536 8.04379 8.49498 8.80290 9.43878 10.94009 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.006001 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.228321 B = 4664.820180 C = 5534.597997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.122 4.122 4 C -0.100 4.100 5 C -0.072 4.072 6 C -0.089 4.089 7 H 0.124 0.876 8 C -0.154 4.154 9 C 0.522 3.478 10 O -0.484 6.484 11 N -0.555 5.555 12 C 0.231 3.769 13 C -0.533 4.533 14 H 0.059 0.941 15 C 0.066 3.934 16 N -0.890 5.890 17 Si 0.903 3.097 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.273 1.273 21 C 0.531 3.469 22 O -0.476 6.476 23 C -0.102 4.102 24 C -0.115 4.115 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.266 0.734 35 H 0.124 0.876 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.544 12.410 9.632 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.118 4.118 5 C -0.072 4.072 6 C -0.111 4.111 7 H 0.142 0.858 8 C -0.194 4.194 9 C 0.310 3.690 10 O -0.357 6.357 11 N -0.296 5.296 12 C 0.114 3.886 13 C -0.571 4.571 14 H 0.077 0.923 15 C -0.137 4.137 16 N -0.528 5.528 17 Si 0.730 3.270 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.197 1.197 21 C 0.317 3.683 22 O -0.347 6.347 23 C -0.120 4.120 24 C -0.133 4.133 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.142 0.858 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.159 11.959 9.150 18.742 hybrid contribution -0.482 -0.871 -0.419 1.080 sum -11.642 11.088 8.731 18.295 Atomic orbital electron populations 1.20785 0.91318 1.02575 1.02335 1.19934 0.96015 0.93251 0.99611 1.20950 0.93957 0.97433 1.01677 1.20965 0.94165 0.97115 0.99576 1.19208 0.92423 0.93834 1.01757 1.21055 0.93751 1.02047 0.94202 0.85807 1.22643 1.01783 0.96838 0.98099 1.20540 0.80190 0.85641 0.82648 1.90725 1.41665 1.35181 1.68093 1.47011 1.46004 1.26964 1.09609 1.19661 0.93827 0.87326 0.87805 1.21200 1.00320 1.07448 1.28160 0.92298 1.24898 0.95440 0.98069 0.95333 1.69922 1.17943 1.34250 1.30713 0.86416 0.80604 0.81154 0.78845 1.20376 1.20860 1.19746 1.20305 0.77515 0.80598 0.89838 1.90716 1.55976 1.68023 1.19983 1.21116 0.94546 0.97866 0.98429 1.21002 0.93894 0.97690 1.00704 0.91179 0.91590 0.91674 0.86048 0.85744 0.86643 0.86615 0.93142 0.93051 0.92417 0.85798 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.01 0.36 -0.59 16 2 C -0.09 -1.00 5.88 -104.62 -0.62 -1.62 16 3 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 4 C -0.10 -1.16 9.68 -39.58 -0.38 -1.55 16 5 C -0.07 -0.98 4.81 -104.62 -0.50 -1.49 16 6 C -0.09 -1.23 3.33 -91.98 -0.31 -1.54 16 7 H 0.12 1.32 7.94 -51.93 -0.41 0.90 16 8 C -0.15 -2.00 6.38 -26.94 -0.17 -2.17 16 9 C 0.52 10.10 8.08 -11.09 -0.09 10.01 16 10 O -0.48 -11.02 17.48 5.60 0.10 -10.92 16 11 N -0.56 -12.08 2.54 -116.63 -0.30 -12.38 16 12 C 0.23 6.16 5.31 -5.20 -0.03 6.13 16 13 C -0.53 -15.29 9.39 -34.44 -0.32 -15.62 16 14 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 15 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 16 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 17 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.53 10.49 7.03 -11.09 -0.08 10.42 16 22 O -0.48 -11.09 17.48 5.60 0.10 -10.99 16 23 C -0.10 -1.50 8.52 -39.59 -0.34 -1.84 16 24 C -0.11 -1.49 9.70 -39.59 -0.38 -1.87 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 27 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 29 H 0.12 1.14 7.98 -52.49 -0.42 0.72 16 30 H 0.12 1.36 7.27 -51.93 -0.38 0.98 16 31 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 1.43 7.83 -51.93 -0.41 1.02 16 33 H 0.05 1.45 7.83 -51.93 -0.41 1.04 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.12 2.02 7.98 -52.48 -0.42 1.60 16 36 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 316.43 15.07 4.77 4.77 Total: -1.00 -34.06 316.43 -7.47 -41.53 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -4.52 Total: -1.60 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -3.34 Total: -1.64 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.44 Total: -38.12 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.20 Total: -21.91 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.06 -7.47 -41.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899897952.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.065 kcal (2) G-P(sol) polarization free energy of solvation -34.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds