Wall clock time and date at job start Mon Mar 30 2020 01:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38238 * 119.99520 * 2 1 4 4 C 1.38234 * 119.99842 * 179.97438 * 3 2 1 5 5 C 1.38237 * 120.00043 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99848 * 179.97438 * 5 4 3 7 7 H 1.08994 * 110.53956 * 358.61141 * 6 5 4 8 8 C 1.54228 * 110.60378 * 235.58808 * 6 5 4 9 9 C 1.51317 * 103.55646 * 241.48277 * 8 6 5 10 10 O 1.21219 * 125.39677 * 180.02562 * 9 8 6 11 11 N 1.33882 * 109.20424 * 0.02562 * 9 8 6 12 12 C 1.46497 * 122.75870 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47169 * 269.99826 * 12 11 9 14 14 H 1.07999 * 120.00011 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00535 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99275 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00309 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47339 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46826 * 120.00017 * 17 15 13 20 20 H 1.48503 * 109.47051 * 239.99714 * 17 15 13 21 21 C 1.33875 * 114.47808 * 359.97438 * 11 9 8 22 22 O 1.21224 * 125.39785 * 179.97438 * 21 11 9 23 23 C 1.38230 * 120.00107 * 0.25527 * 5 4 3 24 24 C 1.38230 * 120.00562 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47289 * 90.00372 * 1 2 3 26 26 H 1.09005 * 109.46923 * 209.99814 * 1 2 3 27 27 H 1.08999 * 109.47659 * 329.99484 * 1 2 3 28 28 H 1.08000 * 120.00569 * 0.02562 * 3 2 1 29 29 H 1.08003 * 120.00400 * 180.02562 * 4 3 2 30 30 H 1.08990 * 110.60870 * 0.02562 * 8 6 5 31 31 H 1.09007 * 110.60124 * 122.96936 * 8 6 5 32 32 H 1.09001 * 109.47331 * 30.00136 * 12 11 9 33 33 H 1.08999 * 109.47213 * 150.00069 * 12 11 9 34 34 H 0.97003 * 119.99678 * 179.97438 * 16 15 13 35 35 H 1.08001 * 120.00383 * 179.72394 * 23 5 4 36 36 H 1.08000 * 119.99883 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0002 0.0005 6 6 5.7787 0.0003 0.0005 7 1 6.1610 1.0207 -0.0242 8 6 6.3215 -0.8155 -1.1905 9 6 7.1038 -1.9297 -0.5300 10 8 7.7017 -2.8087 -1.1125 11 7 7.0309 -1.7909 0.7996 12 6 7.6851 -2.7141 1.7301 13 6 6.7407 -3.8383 2.0694 14 1 5.7522 -3.8629 1.6351 15 6 7.1385 -4.8356 2.9345 16 7 8.3425 -4.8059 3.4630 17 14 5.9682 -6.2295 3.3545 18 1 4.6848 -6.0325 2.6339 19 1 6.5723 -7.5232 2.9461 20 1 5.7168 -6.2408 4.8181 21 6 6.3110 -0.7389 1.2088 22 8 6.1158 -0.4283 2.3642 23 6 3.5806 -1.1970 -0.0053 24 6 2.1982 -1.1970 -0.0005 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6581 2.1325 0.0004 29 1 4.1204 2.1326 0.0010 30 1 5.5017 -1.2210 -1.7831 31 1 6.9762 -0.2016 -1.8092 32 1 8.5834 -3.1216 1.2663 33 1 7.9566 -2.1803 2.6408 34 1 8.6223 -5.5073 4.0719 35 1 4.1206 -2.1323 -0.0098 36 1 1.6583 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899897953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:31 Heat of formation + Delta-G solvation = -49.613242 kcal Electronic energy + Delta-G solvation = -20682.517391 eV Core-core repulsion = 17517.370615 eV Total energy + Delta-G solvation = -3165.146776 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.42223 -39.20613 -37.82162 -35.28826 -34.46025 -32.82105 -31.31635 -30.89446 -27.84764 -26.85842 -24.95936 -23.23869 -22.77978 -21.90353 -20.58052 -18.83194 -17.16486 -16.69861 -16.14682 -15.96632 -15.34354 -15.02206 -14.85944 -14.56757 -14.01551 -13.70418 -13.57504 -13.43717 -13.33618 -13.22403 -12.69318 -12.33013 -12.22708 -11.90470 -11.63898 -11.53118 -11.13556 -10.99082 -10.91662 -10.78797 -10.42485 -9.99017 -9.80400 -9.37820 -8.89856 -8.60151 -8.53919 -8.45878 -6.15877 -4.21022 1.25811 1.42649 2.10380 3.25881 3.26686 3.33738 3.39726 3.46047 3.73773 4.36809 4.46264 4.59612 4.60716 4.78193 4.83532 4.92381 5.03448 5.19629 5.20959 5.33040 5.45844 5.47852 5.63017 5.68737 5.72378 5.81153 6.04775 6.08219 6.40146 6.51451 6.57895 6.58869 6.86845 6.99753 7.19459 7.76812 7.81681 8.01440 8.04351 8.49508 8.80530 9.43843 10.93837 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017248 B = 0.006006 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.997317 B = 4660.632614 C = 5531.268792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.122 4.122 4 C -0.100 4.100 5 C -0.072 4.072 6 C -0.089 4.089 7 H 0.124 0.876 8 C -0.154 4.154 9 C 0.522 3.478 10 O -0.484 6.484 11 N -0.555 5.555 12 C 0.231 3.769 13 C -0.532 4.532 14 H 0.059 0.941 15 C 0.065 3.935 16 N -0.890 5.890 17 Si 0.903 3.097 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.531 3.469 22 O -0.476 6.476 23 C -0.102 4.102 24 C -0.115 4.115 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.266 0.734 35 H 0.124 0.876 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.526 12.423 -9.697 19.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.118 4.118 5 C -0.072 4.072 6 C -0.111 4.111 7 H 0.142 0.858 8 C -0.194 4.194 9 C 0.310 3.690 10 O -0.357 6.357 11 N -0.296 5.296 12 C 0.113 3.887 13 C -0.571 4.571 14 H 0.078 0.922 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.730 3.270 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.207 1.207 21 C 0.318 3.682 22 O -0.347 6.347 23 C -0.120 4.120 24 C -0.133 4.133 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.142 0.858 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.147 11.975 -9.213 18.776 hybrid contribution -0.473 -0.876 0.410 1.077 sum -11.620 11.099 -8.803 18.322 Atomic orbital electron populations 1.20784 0.91319 1.02769 1.02139 1.19932 0.96017 0.93248 0.99632 1.20951 0.93955 0.97432 1.01656 1.20967 0.94165 0.97115 0.99594 1.19205 0.92419 0.93834 1.01743 1.21053 0.93742 1.02061 0.94203 0.85816 1.22646 1.01834 0.96801 0.98098 1.20535 0.80133 0.85691 0.82648 1.90722 1.41644 1.35198 1.68106 1.47011 1.46131 1.26839 1.09611 1.19667 0.93853 0.87335 0.87804 1.21239 1.00257 1.07513 1.28045 0.92240 1.24904 0.95459 0.98071 0.95348 1.69936 1.17962 1.34154 1.30775 0.86356 0.80796 0.81564 0.78257 1.19677 1.20667 1.20692 1.20303 0.77493 0.80613 0.89838 1.90714 1.55905 1.68067 1.20001 1.21117 0.94545 0.97854 0.98457 1.21003 0.93896 0.97692 1.00667 0.91281 0.91539 0.91632 0.86046 0.85744 0.86664 0.86593 0.93053 0.93131 0.92475 0.85805 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.00 0.36 -0.60 16 2 C -0.09 -1.00 5.88 -104.63 -0.62 -1.62 16 3 C -0.12 -1.32 9.70 -39.58 -0.38 -1.71 16 4 C -0.10 -1.17 9.68 -39.58 -0.38 -1.55 16 5 C -0.07 -0.98 4.81 -104.62 -0.50 -1.49 16 6 C -0.09 -1.23 3.32 -91.97 -0.31 -1.54 16 7 H 0.12 1.31 7.94 -51.93 -0.41 0.90 16 8 C -0.15 -2.00 6.38 -26.94 -0.17 -2.17 16 9 C 0.52 10.09 8.08 -11.08 -0.09 10.00 16 10 O -0.48 -11.01 17.48 5.61 0.10 -10.91 16 11 N -0.56 -12.08 2.54 -116.63 -0.30 -12.38 16 12 C 0.23 6.15 5.31 -5.20 -0.03 6.12 16 13 C -0.53 -15.27 9.39 -34.44 -0.32 -15.60 16 14 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 15 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 16 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 17 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C 0.53 10.50 7.05 -11.08 -0.08 10.42 16 22 O -0.48 -11.09 17.48 5.61 0.10 -10.99 16 23 C -0.10 -1.50 8.51 -39.58 -0.34 -1.84 16 24 C -0.11 -1.49 9.70 -39.58 -0.38 -1.87 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.12 1.14 7.98 -52.48 -0.42 0.72 16 30 H 0.12 1.36 7.26 -51.93 -0.38 0.98 16 31 H 0.12 1.13 8.14 -51.92 -0.42 0.70 16 32 H 0.05 1.45 7.83 -51.93 -0.41 1.04 16 33 H 0.05 1.43 7.83 -51.93 -0.41 1.02 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.12 2.02 7.98 -52.49 -0.42 1.60 16 36 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 316.42 15.07 4.77 4.77 Total: -1.00 -34.08 316.42 -7.47 -41.55 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -4.52 Total: -1.63 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -3.34 Total: -1.66 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.44 Total: -38.12 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.20 Total: -21.90 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.08 -7.47 -41.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899897953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.067 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds