Wall clock time and date at job start Mon Mar 30 2020 01:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38238 * 119.99520 * 2 1 4 4 C 1.38234 * 119.99842 * 179.97438 * 3 2 1 5 5 C 1.38237 * 120.00043 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99848 * 179.97438 * 5 4 3 7 7 H 1.08994 * 110.53956 * 358.61141 * 6 5 4 8 8 C 1.54228 * 110.60378 * 235.58808 * 6 5 4 9 9 C 1.51317 * 103.55646 * 241.48277 * 8 6 5 10 10 O 1.21219 * 125.39677 * 180.02562 * 9 8 6 11 11 N 1.33882 * 109.20424 * 0.02562 * 9 8 6 12 12 C 1.46497 * 122.75870 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47169 * 269.99826 * 12 11 9 14 14 H 1.07999 * 120.00011 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00535 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99275 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00309 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47339 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46826 * 120.00017 * 17 15 13 20 20 H 1.48503 * 109.47051 * 239.99714 * 17 15 13 21 21 C 1.33875 * 114.47808 * 359.97438 * 11 9 8 22 22 O 1.21224 * 125.39785 * 179.97438 * 21 11 9 23 23 C 1.38230 * 120.00107 * 0.25527 * 5 4 3 24 24 C 1.38230 * 120.00562 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47289 * 90.00372 * 1 2 3 26 26 H 1.09005 * 109.46923 * 209.99814 * 1 2 3 27 27 H 1.08999 * 109.47659 * 329.99484 * 1 2 3 28 28 H 1.08000 * 120.00569 * 0.02562 * 3 2 1 29 29 H 1.08003 * 120.00400 * 180.02562 * 4 3 2 30 30 H 1.08990 * 110.60870 * 0.02562 * 8 6 5 31 31 H 1.09007 * 110.60124 * 122.96936 * 8 6 5 32 32 H 1.09001 * 109.47331 * 30.00136 * 12 11 9 33 33 H 1.08999 * 109.47213 * 150.00069 * 12 11 9 34 34 H 0.97003 * 119.99678 * 179.97438 * 16 15 13 35 35 H 1.08001 * 120.00383 * 179.72394 * 23 5 4 36 36 H 1.08000 * 119.99883 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0002 0.0005 6 6 5.7787 0.0003 0.0005 7 1 6.1610 1.0207 -0.0242 8 6 6.3215 -0.8155 -1.1905 9 6 7.1038 -1.9297 -0.5300 10 8 7.7017 -2.8087 -1.1125 11 7 7.0309 -1.7909 0.7996 12 6 7.6851 -2.7141 1.7301 13 6 6.7407 -3.8383 2.0694 14 1 5.7522 -3.8629 1.6351 15 6 7.1385 -4.8356 2.9345 16 7 8.3425 -4.8059 3.4630 17 14 5.9682 -6.2295 3.3545 18 1 4.6848 -6.0325 2.6339 19 1 6.5723 -7.5232 2.9461 20 1 5.7168 -6.2408 4.8181 21 6 6.3110 -0.7389 1.2088 22 8 6.1158 -0.4283 2.3642 23 6 3.5806 -1.1970 -0.0053 24 6 2.1982 -1.1970 -0.0005 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6581 2.1325 0.0004 29 1 4.1204 2.1326 0.0010 30 1 5.5017 -1.2210 -1.7831 31 1 6.9762 -0.2016 -1.8092 32 1 8.5834 -3.1216 1.2663 33 1 7.9566 -2.1803 2.6408 34 1 8.6223 -5.5073 4.0719 35 1 4.1206 -2.1323 -0.0098 36 1 1.6583 -2.1324 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899897953.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:31 Heat of formation + Delta-G solvation = -71.185714 kcal Electronic energy + Delta-G solvation = -20683.452844 eV Core-core repulsion = 17517.370615 eV Total energy + Delta-G solvation = -3166.082229 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.92132 -40.23050 -39.45728 -36.90436 -36.00013 -34.66052 -32.54892 -31.82757 -29.55757 -28.14878 -26.22798 -25.21335 -23.81850 -23.14492 -21.66909 -20.41418 -19.05802 -18.22354 -17.79919 -17.46811 -16.61310 -16.46358 -16.14975 -15.90315 -15.57306 -15.16316 -14.82210 -14.63545 -14.51854 -14.29892 -14.10190 -13.74763 -13.71455 -13.17176 -13.01600 -12.82104 -12.76349 -12.59943 -12.42849 -11.99368 -11.95147 -11.82624 -11.48981 -10.98647 -10.75852 -10.54482 -9.82625 -9.42365 -8.38615 -6.53399 0.29115 0.49181 0.57421 1.30142 1.32123 1.44057 1.75116 1.93639 2.30086 2.73803 2.93828 3.21457 3.34079 3.50643 3.69809 3.93936 4.08113 4.12414 4.27115 4.53165 4.54946 4.61263 4.68633 4.77947 4.80112 4.87102 4.87777 4.94776 4.96271 5.17090 5.29695 5.49314 5.51071 5.61335 5.71031 5.79714 6.09882 6.11619 6.49650 6.50054 6.87321 7.17649 8.71882 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017248 B = 0.006006 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.997317 B = 4660.632614 C = 5531.268792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.122 4.122 4 C -0.094 4.094 5 C -0.090 4.090 6 C -0.067 4.067 7 H 0.171 0.829 8 C -0.129 4.129 9 C 0.514 3.486 10 O -0.528 6.528 11 N -0.571 5.571 12 C 0.244 3.756 13 C -0.554 4.554 14 H 0.052 0.948 15 C 0.012 3.988 16 N -0.922 5.922 17 Si 0.972 3.028 18 H -0.267 1.267 19 H -0.269 1.269 20 H -0.270 1.270 21 C 0.523 3.477 22 O -0.521 6.521 23 C -0.127 4.127 24 C -0.133 4.133 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.154 0.846 29 H 0.157 0.843 30 H 0.134 0.866 31 H 0.166 0.834 32 H 0.024 0.976 33 H 0.022 0.978 34 H 0.272 0.728 35 H 0.093 0.907 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.948 14.553 -11.099 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.139 4.139 4 C -0.112 4.112 5 C -0.090 4.090 6 C -0.088 4.088 7 H 0.188 0.812 8 C -0.168 4.168 9 C 0.305 3.695 10 O -0.403 6.403 11 N -0.311 5.311 12 C 0.124 3.876 13 C -0.592 4.592 14 H 0.071 0.929 15 C -0.188 4.188 16 N -0.561 5.561 17 Si 0.795 3.205 18 H -0.192 1.192 19 H -0.194 1.194 20 H -0.196 1.196 21 C 0.313 3.687 22 O -0.396 6.396 23 C -0.146 4.146 24 C -0.151 4.151 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.172 0.828 29 H 0.175 0.825 30 H 0.152 0.848 31 H 0.183 0.817 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.583 14.134 -10.646 22.307 hybrid contribution 0.253 -1.512 0.867 1.761 sum -13.330 12.622 -9.780 20.800 Atomic orbital electron populations 1.20849 0.89205 1.03543 1.03336 1.20316 0.97659 0.92803 0.98061 1.21393 0.93980 0.98448 1.00122 1.21340 0.94725 0.97322 0.97808 1.19240 0.92012 0.94321 1.03453 1.21115 0.94018 1.03290 0.90341 0.81179 1.22743 1.01914 0.94327 0.97817 1.21688 0.79520 0.86529 0.81742 1.90688 1.43658 1.37423 1.68556 1.47138 1.46639 1.27017 1.10289 1.19055 0.93206 0.87691 0.87648 1.21491 1.00290 1.08706 1.28678 0.92942 1.25879 0.97258 1.00713 0.94931 1.70041 1.19635 1.35230 1.31151 0.85299 0.78556 0.78219 0.78399 1.19164 1.19383 1.19558 1.21421 0.76133 0.79960 0.91149 1.90673 1.57289 1.69144 1.22462 1.21062 0.95470 0.97382 1.00660 1.21158 0.93432 0.98962 1.01524 0.89757 0.91662 0.90019 0.82802 0.82493 0.84818 0.81656 0.95784 0.96002 0.91912 0.88852 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 10.01 71.23 0.71 -0.83 16 2 C -0.09 -1.77 5.88 -19.87 -0.12 -1.89 16 3 C -0.12 -2.14 9.70 22.27 0.22 -1.92 16 4 C -0.09 -1.80 9.68 22.27 0.22 -1.58 16 5 C -0.09 -2.26 4.81 -19.86 -0.10 -2.36 16 6 C -0.07 -1.68 3.32 -11.67 -0.04 -1.72 16 7 H 0.17 2.75 7.94 -2.39 -0.02 2.73 16 8 C -0.13 -3.02 6.38 30.46 0.19 -2.83 16 9 C 0.51 20.17 8.08 87.99 0.71 20.88 16 10 O -0.53 -24.85 17.48 -2.84 -0.05 -24.90 16 11 N -0.57 -25.90 2.54 -760.73 -1.93 -27.83 16 12 C 0.24 13.90 5.31 85.63 0.45 14.36 16 13 C -0.55 -33.43 9.39 25.60 0.24 -33.19 16 14 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 15 C 0.01 0.73 5.46 84.66 0.46 1.20 16 16 N -0.92 -56.83 13.29 21.45 0.28 -56.55 16 17 Si 0.97 46.10 29.54 68.60 2.03 48.13 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 21 C 0.52 21.00 7.05 87.99 0.62 21.62 16 22 O -0.52 -25.13 17.48 -2.86 -0.05 -25.18 16 23 C -0.13 -3.74 8.51 22.27 0.19 -3.55 16 24 C -0.13 -3.36 9.70 22.27 0.22 -3.14 16 25 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.06 0.92 8.09 -2.38 -0.02 0.90 16 27 H 0.08 0.88 8.09 -2.39 -0.02 0.86 16 28 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 29 H 0.16 1.94 7.98 -2.91 -0.02 1.92 16 30 H 0.13 2.78 7.26 -2.39 -0.02 2.77 16 31 H 0.17 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.02 1.47 7.83 -2.39 -0.02 1.45 16 33 H 0.02 1.34 7.83 -2.39 -0.02 1.32 16 34 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.09 3.22 7.98 -2.91 -0.02 3.20 16 36 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -80.51 316.42 5.35 -75.17 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.08 Total: 6.12 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 3.98 Total: 5.05 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -1.65 Total: -84.38 kcal Atomic # 8 Polarization: -49.98 SS G_CDS: -0.10 Total: -50.08 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -80.51 5.35 -75.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899897953.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.981 kcal (2) G-P(sol) polarization free energy of solvation -80.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds