Wall clock time and date at job start Mon Mar 30 2020 01:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99922 * 2 1 4 4 H 1.48503 * 109.47447 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47391 * 300.00158 * 3 2 1 6 6 H 1.48502 * 109.46933 * 60.00509 * 3 2 1 7 7 C 1.37878 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99961 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47491 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47395 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99883 * 180.02562 * 11 10 9 13 13 O 1.21546 * 120.00463 * 359.97438 * 12 11 10 14 14 C 1.47869 * 119.99819 * 179.97438 * 12 11 10 15 15 C 1.39673 * 120.07409 * 359.97438 * 14 12 11 16 16 C 1.38046 * 120.13926 * 180.02562 * 15 14 12 17 17 C 1.38110 * 120.29793 * 359.71592 * 16 15 14 18 18 C 1.39614 * 120.14346 * 0.55916 * 17 16 15 19 19 C 1.43206 * 120.06556 * 179.71703 * 18 17 16 20 20 C 9.66845 * 162.16867 * 179.97438 * 9 1 2 21 21 C 9.74785 * 155.58625 * 179.97438 * 10 1 2 22 22 O 1.42898 * 109.47232 * 273.54504 * 21 20 19 23 23 C 1.39304 * 119.86296 * 359.44630 * 18 17 16 24 24 H 0.96991 * 120.00430 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47172 * 59.99887 * 9 7 2 26 26 H 1.09005 * 109.47232 * 300.00247 * 9 7 2 27 27 H 1.09001 * 109.47122 * 59.99713 * 10 9 7 28 28 H 1.09001 * 109.47121 * 299.99786 * 10 9 7 29 29 H 0.97000 * 119.99909 * 359.97438 * 11 10 9 30 30 H 1.08004 * 119.93433 * 359.97438 * 15 14 12 31 31 H 1.07998 * 119.84845 * 180.02562 * 16 15 14 32 32 H 1.07995 * 119.92980 * 180.28331 * 17 16 15 33 33 H 1.09002 * 109.47120 * 153.54271 * 21 20 19 34 34 H 1.09001 * 109.46952 * 33.54408 * 21 20 19 35 35 H 0.96701 * 113.99881 * 180.02562 * 22 21 20 36 36 H 1.07998 * 120.14812 * 180.25342 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 7 1.5129 -4.9308 -0.0032 12 6 2.1869 -6.0980 -0.0028 13 8 3.4024 -6.0980 -0.0014 14 6 1.4476 -7.3786 -0.0040 15 6 0.0509 -7.3804 -0.0050 16 6 -0.6407 -8.5752 -0.0056 17 6 0.0423 -9.7756 -0.0111 18 6 1.4384 -9.7879 -0.0043 19 6 2.1449 -11.0336 -0.0039 20 6 2.7241 -12.0547 -0.0069 21 6 3.4504 -13.3351 -0.0035 22 8 3.6114 -13.7879 1.3423 23 6 2.1427 -8.5860 -0.0037 24 1 -0.4850 0.8399 0.0004 25 1 0.6248 -2.5563 -0.8920 26 1 0.6241 -2.5575 0.8880 27 1 2.8714 -3.6047 0.8890 28 1 2.8727 -3.6039 -0.8910 29 1 0.5429 -4.9308 -0.0039 30 1 -0.4893 -6.4452 -0.0045 31 1 -1.7206 -8.5712 -0.0068 32 1 -0.5047 -10.7067 -0.0161 33 1 4.4304 -13.1982 -0.4605 34 1 2.8852 -14.0749 -0.5705 35 1 4.0831 -14.6283 1.4207 36 1 3.2227 -8.5902 -0.0026 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907320237.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:52 Heat of formation + Delta-G solvation = -22.813014 kcal Electronic energy + Delta-G solvation = -18606.591562 eV Core-core repulsion = 15442.606931 eV Total energy + Delta-G solvation = -3163.984631 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.09083 -38.35072 -37.45391 -34.96833 -34.17274 -32.89487 -31.45276 -31.02791 -29.43990 -27.07522 -25.20678 -23.58741 -22.89216 -21.05179 -20.47511 -18.58052 -17.98723 -16.73835 -16.56955 -16.06075 -15.74890 -15.40995 -15.09042 -14.97963 -14.56749 -14.46241 -13.90352 -13.53230 -13.28078 -12.93719 -12.62623 -12.32213 -12.05796 -11.63192 -11.23786 -11.21813 -11.19467 -11.05941 -10.64216 -10.37202 -10.08925 -9.88165 -9.52522 -9.23690 -9.19214 -8.80511 -8.56869 -8.37869 -6.11078 -4.13794 0.52351 0.92331 2.29382 2.36638 3.12621 3.27723 3.35187 3.39820 3.51145 3.68129 3.88992 4.39253 4.40650 4.67406 4.68794 4.78356 4.88226 4.95434 5.02204 5.16741 5.26196 5.29006 5.60146 5.76881 6.09697 6.12518 6.14992 6.31944 6.33535 6.59165 6.70485 6.84470 7.09290 7.22750 7.49068 7.58740 7.86982 7.93541 8.25303 8.55487 8.92265 9.51194 11.00583 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.040762 B = 0.002568 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.748561 B =10900.820034 C =11491.805183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.714 5.714 12 C 0.548 3.452 13 O -0.545 6.545 14 C -0.125 4.125 15 C -0.073 4.073 16 C -0.125 4.125 17 C -0.073 4.073 18 C -0.003 4.003 19 C -0.104 4.104 20 C -0.172 4.172 21 C 0.195 3.805 22 O -0.567 6.567 23 C -0.035 4.035 24 H 0.262 0.738 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.397 0.603 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.388 0.612 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.448 -25.414 -1.012 25.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.026 4.026 10 C -0.001 4.001 11 N -0.364 5.364 12 C 0.334 3.666 13 O -0.424 6.424 14 C -0.128 4.128 15 C -0.092 4.092 16 C -0.143 4.143 17 C -0.091 4.091 18 C -0.004 4.004 19 C -0.104 4.104 20 C -0.172 4.172 21 C 0.118 3.882 22 O -0.374 6.374 23 C -0.054 4.054 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.232 0.768 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.236 0.764 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.038 -24.686 -0.890 24.702 hybrid contribution 0.142 0.465 -0.159 0.512 sum 0.105 -24.221 -1.050 24.244 Atomic orbital electron populations 1.69957 1.06082 1.26798 1.50442 1.25002 0.94913 0.99455 0.94983 0.86448 0.80172 0.83286 0.77611 1.19572 1.20934 1.20933 1.21082 0.93310 0.90316 1.51245 0.92144 1.19342 0.94218 0.91117 0.97912 1.21789 0.96121 0.81162 1.01061 1.46273 1.10590 1.06444 1.73119 1.18200 0.87305 0.83753 0.77355 1.90751 1.13403 1.87635 1.50593 1.20058 0.93793 0.93932 1.05053 1.21570 0.93057 0.99109 0.95484 1.21043 1.00500 0.91566 1.01191 1.21370 0.92468 0.98779 0.96516 1.15774 0.92056 0.87748 1.04778 1.19106 0.99313 0.93473 0.98509 1.21661 0.98300 0.94829 1.02446 1.18696 0.97336 0.87866 0.84290 1.86569 1.80987 1.43838 1.26023 1.21343 1.00933 0.89603 0.93504 0.92883 0.95864 0.95862 0.92277 0.92293 0.76790 0.84730 0.84617 0.85206 0.90726 0.90860 0.76430 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.28 5.09 -27.89 -0.14 0.14 16 10 C 0.12 2.57 5.61 -4.04 -0.02 2.55 16 11 N -0.71 -12.64 5.51 -61.24 -0.34 -12.98 16 12 C 0.55 9.78 7.77 -12.32 -0.10 9.69 16 13 O -0.54 -11.63 16.34 5.33 0.09 -11.54 16 14 C -0.13 -1.79 5.87 -105.02 -0.62 -2.41 16 15 C -0.07 -0.83 9.54 -39.12 -0.37 -1.21 16 16 C -0.13 -1.18 10.02 -39.70 -0.40 -1.58 16 17 C -0.07 -0.74 9.74 -39.12 -0.38 -1.12 16 18 C 0.00 -0.04 5.72 -107.06 -0.61 -0.66 16 19 C -0.10 -1.31 13.23 -38.83 -0.51 -1.82 16 20 C -0.17 -1.95 13.73 -37.12 -0.51 -2.46 16 21 C 0.19 1.37 7.52 34.37 0.26 1.63 16 22 O -0.57 -4.45 13.62 -35.23 -0.48 -4.93 16 23 C -0.03 -0.49 9.29 -38.78 -0.36 -0.85 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.40 5.96 6.50 -40.82 -0.27 5.70 16 30 H 0.13 1.30 6.39 -52.48 -0.34 0.96 16 31 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.39 0.77 9.12 45.56 0.42 1.19 16 36 H 0.14 2.04 7.65 -52.49 -0.40 1.64 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -34.85 327.98 -7.76 -42.61 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -3.51 Total: 2.08 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -4.18 Total: -11.28 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.40 Total: -38.20 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.39 Total: -16.47 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.85 -7.76 -42.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907320237.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.795 kcal (2) G-P(sol) polarization free energy of solvation -34.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds