Wall clock time and date at job start Mon Mar 30 2020 01:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 C 1.46507 * 120.00266 * 180.02562 * 18 16 15 20 20 C 1.53845 * 113.65681 * 254.00577 * 19 18 16 21 21 C 1.51774 * 86.68477 * 220.75858 * 20 19 18 22 22 O 1.20757 * 135.74724 * 205.15284 * 21 20 19 23 23 C 1.51582 * 88.46706 * 25.08017 * 21 20 19 24 24 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 25 25 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 27 27 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 28 28 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 29 29 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 30 30 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 31 31 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 32 32 H 1.08991 * 112.88023 * 25.33305 * 19 18 16 33 33 H 1.09005 * 113.66549 * 335.19245 * 20 19 18 34 34 H 1.08999 * 113.66691 * 106.26164 * 20 19 18 35 35 H 1.09001 * 113.66310 * 220.45507 * 23 21 20 36 36 H 1.08995 * 113.66793 * 89.38982 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 6 6.6732 -3.8078 -0.3884 20 6 7.4305 -2.4840 -0.5907 21 6 8.6778 -3.3282 -0.7781 22 8 9.8654 -3.1595 -0.6390 23 6 7.7870 -4.4748 -1.2136 24 1 -0.4849 -0.8357 -0.0852 25 1 0.0691 -1.3040 1.8430 26 1 -0.9698 -3.3393 2.7431 27 1 -0.2416 -5.5537 1.9556 28 1 1.5304 -5.7534 0.2610 29 1 2.7709 -4.7177 -1.4995 30 1 2.8121 -2.9465 -1.6708 31 1 5.2988 -3.9312 -2.0021 32 1 6.6401 -4.1384 0.6497 33 1 7.1308 -1.9411 -1.4872 34 1 7.4566 -1.8545 0.2987 35 1 8.0995 -5.4438 -0.8243 36 1 7.5876 -4.4914 -2.2850 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908469535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:03 Heat of formation + Delta-G solvation = -59.560692 kcal Electronic energy + Delta-G solvation = -20303.608665 eV Core-core repulsion = 17138.030535 eV Total energy + Delta-G solvation = -3165.578130 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.42540 -40.40883 -39.25980 -37.55283 -35.71043 -34.08318 -33.19789 -31.07399 -28.63113 -27.13979 -26.80894 -24.29678 -22.80105 -22.15787 -21.24653 -20.10642 -19.55478 -17.87486 -17.72929 -16.85338 -16.75817 -16.59194 -16.27216 -15.99364 -15.62263 -15.19260 -15.17701 -14.45934 -14.19990 -13.91924 -13.79936 -13.62128 -13.45554 -12.95132 -12.87741 -12.61552 -12.52162 -12.32484 -12.21144 -11.98058 -11.45600 -11.18785 -10.82848 -10.78034 -10.52034 -10.00987 -9.41592 -9.39806 -9.02579 -6.36449 0.77070 0.94557 1.01645 1.48704 1.63768 1.77185 1.80173 2.29926 2.33245 2.74292 2.86779 3.41614 3.62492 3.74728 3.97750 4.11213 4.18474 4.33749 4.42417 4.53128 4.54987 4.62157 4.71544 4.77191 4.87343 4.97033 5.05879 5.10939 5.36014 5.53153 5.55686 5.83088 5.87339 6.02062 6.08382 6.32422 6.38159 6.48253 6.69813 6.89532 7.06054 7.45088 8.11620 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.005752 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.444248 B = 4867.019860 C = 6269.206211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.004 3.996 3 Si 1.105 2.895 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.249 1.249 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.086 3.914 10 C -0.247 4.247 11 C -0.099 4.099 12 C -0.252 4.252 13 C -0.080 4.080 14 C -0.190 4.190 15 C -0.070 4.070 16 C 0.519 3.481 17 O -0.575 6.575 18 N -0.706 5.706 19 C 0.128 3.872 20 C -0.211 4.211 21 C 0.368 3.632 22 O -0.465 6.465 23 C -0.170 4.170 24 H 0.284 0.716 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.420 0.580 32 H 0.098 0.902 33 H 0.141 0.859 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.667 -6.794 -7.997 14.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.212 4.212 3 Si 0.923 3.077 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.173 1.173 7 C -0.568 4.568 8 H 0.091 0.909 9 C 0.083 3.917 10 C -0.266 4.266 11 C -0.117 4.117 12 C -0.271 4.271 13 C -0.098 4.098 14 C -0.191 4.191 15 C -0.110 4.110 16 C 0.307 3.693 17 O -0.453 6.453 18 N -0.359 5.359 19 C 0.021 3.979 20 C -0.250 4.250 21 C 0.244 3.756 22 O -0.339 6.339 23 C -0.207 4.207 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.124 0.876 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.117 0.883 31 H 0.259 0.741 32 H 0.116 0.884 33 H 0.159 0.841 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 11.082 -4.997 -7.021 14.038 hybrid contribution -0.385 -1.452 0.178 1.513 sum 10.697 -6.449 -6.842 14.242 Atomic orbital electron populations 1.70554 1.08966 1.33227 1.31817 1.28179 0.95709 1.07163 0.90119 0.83164 0.74971 0.70629 0.78953 1.19775 1.20196 1.17266 1.20553 1.02799 0.94735 1.38668 0.90888 1.17788 0.90724 0.93442 0.89749 1.21148 1.05296 0.96827 1.03368 1.20891 0.98757 0.93298 0.98786 1.20713 1.04540 0.96232 1.05630 1.20823 0.95700 0.97194 0.96103 1.19550 1.03234 0.92755 1.03610 1.20292 0.88683 1.04791 0.97186 1.21137 0.86934 0.74028 0.87182 1.90683 1.87926 1.49563 1.17085 1.45647 1.03809 1.75221 1.11269 1.21864 0.81708 0.95905 0.98382 1.24712 0.94709 0.99942 1.05594 1.25645 0.87437 0.92827 0.69709 1.90421 1.18054 1.82064 1.43319 1.24292 0.92060 0.99867 1.04515 0.90389 0.90091 0.87566 0.86500 0.86080 0.86447 0.88346 0.74121 0.88365 0.84124 0.89903 0.86702 0.82418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.58 12.32 21.82 0.27 -44.32 16 2 C 0.00 0.23 4.94 85.25 0.42 0.65 16 3 Si 1.10 43.72 30.00 68.60 2.06 45.78 16 4 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 7 C -0.54 -28.24 8.08 23.46 0.19 -28.05 16 8 H 0.07 3.68 6.73 -2.91 -0.02 3.66 16 9 C 0.09 4.53 5.30 -21.29 -0.11 4.42 16 10 C -0.25 -13.32 7.95 22.73 0.18 -13.13 16 11 C -0.10 -4.74 10.02 22.22 0.22 -4.52 16 12 C -0.25 -11.04 10.05 22.46 0.23 -10.81 16 13 C -0.08 -3.42 9.66 22.22 0.21 -3.20 16 14 C -0.19 -8.65 4.43 -19.40 -0.09 -8.73 16 15 C -0.07 -2.40 5.18 29.10 0.15 -2.25 16 16 C 0.52 17.66 7.46 87.66 0.65 18.31 16 17 O -0.57 -26.05 15.65 -3.04 -0.05 -26.10 16 18 N -0.71 -15.23 5.37 -440.12 -2.36 -17.59 16 19 C 0.13 2.54 4.24 45.50 0.19 2.74 16 20 C -0.21 -4.03 7.86 30.48 0.24 -3.79 16 21 C 0.37 7.01 9.14 29.67 0.27 7.28 16 22 O -0.46 -12.44 17.99 -1.44 -0.03 -12.47 16 23 C -0.17 -2.02 7.80 30.41 0.24 -1.78 16 24 H 0.28 16.00 6.68 -92.71 -0.62 15.38 16 25 H 0.08 4.62 6.49 -2.91 -0.02 4.60 16 26 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 27 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 28 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 29 H 0.12 3.02 8.05 -2.39 -0.02 3.01 16 30 H 0.10 3.36 7.06 -2.39 -0.02 3.35 16 31 H 0.42 5.52 8.71 -92.71 -0.81 4.71 16 32 H 0.10 2.49 7.50 -2.39 -0.02 2.47 16 33 H 0.14 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.16 0.84 8.11 -2.39 -0.02 0.82 16 Total: -1.00 -72.86 312.70 3.35 -69.51 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.45 Total: 28.07 kcal Atomic # 6 Polarization: -45.88 SS G_CDS: 3.00 Total: -42.88 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -2.09 Total: -61.91 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -0.07 Total: -38.57 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.06 Total: 45.78 kcal Total: -72.86 3.35 -69.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908469535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.952 kcal (2) G-P(sol) polarization free energy of solvation -72.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds