Wall clock time and date at job start Mon Mar 30 2020 01:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38943 * 119.67334 * 2 1 4 4 C 1.36427 * 120.61762 * 180.22841 * 3 2 1 5 5 C 1.40125 * 119.82639 * 359.55533 * 4 3 2 6 6 C 1.41555 * 133.36182 * 180.14866 * 5 4 3 7 7 C 1.35946 * 107.72005 * 180.29164 * 6 5 4 8 8 C 1.46893 * 125.43990 * 180.02562 * 7 6 5 9 9 O 1.21567 * 120.00242 * 359.97438 * 8 7 6 10 10 O 1.34854 * 119.99785 * 179.97438 * 8 7 6 11 11 C 1.45193 * 116.99727 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47210 * 180.02562 * 11 10 8 13 13 C 1.50693 * 109.47232 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00000 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99896 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00093 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00025 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47357 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47451 * 119.99753 * 17 15 13 20 20 H 1.48502 * 109.47073 * 240.00030 * 17 15 13 21 21 N 1.38194 * 109.11628 * 359.97438 * 7 6 5 22 22 H 0.97008 * 125.60717 * 180.02562 * 21 7 6 23 23 C 1.37462 * 108.78371 * 0.02562 * 21 7 6 24 24 C 1.37672 * 119.67169 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47283 * 269.97142 * 1 2 3 26 26 H 1.09003 * 109.47527 * 29.97256 * 1 2 3 27 27 H 1.09003 * 109.47519 * 149.97355 * 1 2 3 28 28 H 1.08004 * 119.69069 * 0.02890 * 3 2 1 29 29 H 1.08003 * 120.08873 * 179.75568 * 4 3 2 30 30 H 1.08003 * 126.13529 * 0.25366 * 6 5 4 31 31 H 1.09000 * 109.47721 * 300.00707 * 11 10 8 32 32 H 1.09003 * 109.47346 * 60.00467 * 11 10 8 33 33 H 1.09000 * 109.46633 * 300.00005 * 12 11 10 34 34 H 1.08995 * 109.46952 * 59.99597 * 12 11 10 35 35 H 0.96994 * 120.00323 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.09548 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2072 0.0000 4 6 3.5589 1.2297 -0.0047 5 6 4.2758 0.0257 -0.0001 6 6 5.6574 -0.2828 -0.0003 7 6 5.7789 -1.6368 -0.0009 8 6 7.0471 -2.3782 -0.0008 9 8 8.1031 -1.7761 -0.0005 10 8 7.0397 -3.7267 -0.0010 11 6 8.3298 -4.3928 -0.0002 12 6 8.1212 -5.9086 -0.0013 13 6 9.4601 -6.6000 0.0001 14 1 10.3691 -6.0167 0.0012 15 6 9.5248 -7.9772 -0.0010 16 7 8.4180 -8.6875 -0.0028 17 14 11.1846 -8.8343 0.0015 18 1 12.2668 -7.8175 0.0039 19 1 11.3009 -9.6845 1.2135 20 1 11.3056 -9.6823 -1.2116 21 7 4.5189 -2.2043 -0.0007 22 1 4.3278 -3.1554 -0.0007 23 6 3.5809 -1.1995 -0.0004 24 6 2.1885 -1.1962 -0.0005 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5142 28 1 1.6445 2.1365 0.0005 29 1 4.0849 2.1730 -0.0086 30 1 6.4691 0.4297 -0.0005 31 1 8.8891 -4.1028 -0.8897 32 1 8.8878 -4.1032 0.8902 33 1 7.5618 -6.1989 0.8881 34 1 7.5633 -6.1979 -0.8918 35 1 8.4635 -9.6564 -0.0040 36 1 1.6448 -2.1293 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000913203748.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:34 Heat of formation + Delta-G solvation = -65.051971 kcal Electronic energy + Delta-G solvation = -19299.451717 eV Core-core repulsion = 16133.635467 eV Total energy + Delta-G solvation = -3165.816250 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.67326 -41.18430 -38.34186 -37.75016 -35.49877 -33.66668 -32.51303 -31.68971 -30.46174 -28.16712 -26.91454 -24.79599 -23.27327 -22.84795 -21.94084 -21.34210 -19.62455 -18.67981 -18.11781 -17.70015 -17.29749 -16.73470 -16.47360 -15.81640 -15.71744 -14.98658 -14.88981 -14.71039 -14.58150 -14.38967 -14.12545 -13.73173 -13.23285 -13.11143 -12.90721 -12.67763 -12.67036 -12.58561 -12.15794 -12.10083 -11.83567 -11.66255 -11.58248 -11.43860 -10.89815 -10.65360 -9.24723 -8.80597 -8.30809 -6.43972 -0.44541 0.63223 0.83517 1.37454 1.39999 1.45368 1.55212 1.93849 1.94530 2.37590 2.87011 3.04058 3.57859 3.67458 3.97723 4.07853 4.15870 4.16308 4.26894 4.33328 4.44486 4.60959 4.66805 4.81779 4.89400 4.93873 5.00115 5.11223 5.30601 5.39339 5.40484 5.46090 5.51945 5.59978 5.68438 5.72340 6.01905 6.10106 6.34662 6.52380 6.69683 7.26109 8.82099 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.038663 B = 0.002963 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.031682 B = 9446.817276 C =10145.099431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.047 4.047 3 C -0.149 4.149 4 C -0.057 4.057 5 C -0.151 4.151 6 C -0.090 4.090 7 C 0.008 3.992 8 C 0.526 3.474 9 O -0.523 6.523 10 O -0.363 6.363 11 C 0.091 3.909 12 C 0.032 3.968 13 C -0.550 4.550 14 H 0.066 0.934 15 C 0.006 3.994 16 N -0.927 5.927 17 Si 0.974 3.026 18 H -0.262 1.262 19 H -0.275 1.275 20 H -0.275 1.275 21 N -0.567 5.567 22 H 0.430 0.570 23 C 0.112 3.888 24 C -0.153 4.153 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.154 0.846 29 H 0.149 0.851 30 H 0.168 0.832 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.268 0.732 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.326 19.604 0.022 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.049 4.049 3 C -0.168 4.168 4 C -0.076 4.076 5 C -0.155 4.155 6 C -0.117 4.117 7 C -0.100 4.100 8 C 0.371 3.629 9 O -0.413 6.413 10 O -0.280 6.280 11 C 0.018 3.982 12 C -0.006 4.006 13 C -0.587 4.587 14 H 0.084 0.916 15 C -0.193 4.193 16 N -0.566 5.566 17 Si 0.798 3.202 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.200 1.200 21 N -0.171 5.171 22 H 0.270 0.730 23 C 0.001 3.999 24 C -0.173 4.173 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.172 0.828 29 H 0.166 0.834 30 H 0.185 0.815 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.077 0.923 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.004 19.376 0.021 25.130 hybrid contribution 1.075 -1.478 0.006 1.827 sum -14.928 17.898 0.028 23.307 Atomic orbital electron populations 1.20886 0.88596 1.04045 1.03451 1.20088 0.97522 0.91764 0.95519 1.20932 0.93631 0.98610 1.03580 1.20711 0.94340 0.96146 0.96366 1.18394 0.92275 0.94192 1.10668 1.21153 0.96823 0.92100 1.01643 1.18957 0.82397 0.92550 1.16071 1.20367 0.88486 0.81196 0.72805 1.90843 1.32623 1.70219 1.47619 1.86570 1.38109 1.19925 1.83396 1.23282 0.80174 0.93220 1.01492 1.18988 0.97325 0.87501 0.96742 1.21392 0.92606 0.92270 1.52474 0.91570 1.25967 1.01143 0.98159 0.94021 1.70091 1.29303 1.06800 1.50414 0.85260 0.78584 0.78334 0.78037 1.18583 1.20028 1.20036 1.41979 1.03267 1.09226 1.62666 0.72992 1.18713 0.91691 0.87449 1.02073 1.20215 0.88892 0.99979 1.08228 0.89896 0.89678 0.90921 0.82813 0.83362 0.81458 0.91731 0.91723 0.97450 0.97446 0.92293 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.99 71.24 0.71 -0.28 16 2 C -0.05 -0.71 5.88 -19.83 -0.12 -0.83 16 3 C -0.15 -2.12 9.61 22.02 0.21 -1.91 16 4 C -0.06 -1.00 10.06 22.30 0.22 -0.78 16 5 C -0.15 -3.61 6.16 -21.36 -0.13 -3.75 16 6 C -0.09 -2.44 10.53 22.56 0.24 -2.20 16 7 C 0.01 0.24 6.99 39.87 0.28 0.52 16 8 C 0.53 19.76 7.94 70.09 0.56 20.32 16 9 O -0.52 -21.55 16.63 19.62 0.33 -21.22 16 10 O -0.36 -14.96 10.23 -57.67 -0.59 -15.55 16 11 C 0.09 4.13 5.42 71.98 0.39 4.52 16 12 C 0.03 1.70 5.35 29.85 0.16 1.86 16 13 C -0.55 -31.15 9.11 25.60 0.23 -30.91 16 14 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 15 C 0.01 0.35 5.46 84.66 0.46 0.81 16 16 N -0.93 -55.34 13.29 21.45 0.28 -55.06 16 17 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 18 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 N -0.57 -15.34 6.19 -177.24 -1.10 -16.44 16 22 H 0.43 10.64 8.96 -92.70 -0.83 9.81 16 23 C 0.11 2.72 7.25 39.14 0.28 3.01 16 24 C -0.15 -2.91 9.71 22.38 0.22 -2.70 16 25 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16 27 H 0.07 0.59 8.08 -2.39 -0.02 0.57 16 28 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 29 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 30 H 0.17 3.98 8.06 -2.91 -0.02 3.96 16 31 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -68.13 320.77 4.94 -63.19 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.27 Total: 11.78 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 3.72 Total: -12.32 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -0.81 Total: -71.50 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -0.26 Total: -36.77 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -68.13 4.94 -63.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913203748.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.861 kcal (2) G-P(sol) polarization free energy of solvation -68.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds