Wall clock time and date at job start Mon Mar 30 2020 01:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35735 * 120.33385 * 2 1 4 4 C 1.40833 * 119.72646 * 180.02562 * 3 2 1 5 5 C 1.34541 * 120.57920 * 359.97438 * 4 3 2 6 6 N 1.37441 * 120.74781 * 0.02562 * 5 4 3 7 7 C 1.35094 * 131.26903 * 179.97438 * 6 5 4 8 8 C 1.38132 * 108.76159 * 179.97438 * 7 6 5 9 9 C 1.47360 * 126.37941 * 179.97438 * 8 7 6 10 10 O 1.21521 * 119.99610 * 180.02562 * 9 8 7 11 11 O 1.34752 * 120.00405 * 0.03178 * 9 8 7 12 12 C 1.45198 * 117.00139 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46884 * 179.97438 * 12 11 9 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99776 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99923 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00006 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46794 * 89.99626 * 18 16 14 20 20 H 1.48502 * 109.47140 * 209.99610 * 18 16 14 21 21 H 1.48501 * 109.46982 * 329.99723 * 18 16 14 22 22 C 1.41246 * 107.23639 * 0.24436 * 8 7 6 23 23 C 1.37959 * 119.80854 * 359.97438 * 6 5 4 24 24 H 1.09001 * 109.46628 * 269.97155 * 1 2 3 25 25 H 1.09003 * 109.47074 * 29.97326 * 1 2 3 26 26 H 1.09004 * 109.46909 * 149.97731 * 1 2 3 27 27 H 1.07996 * 120.13925 * 0.02562 * 3 2 1 28 28 H 1.07994 * 119.71080 * 180.02562 * 4 3 2 29 29 H 1.07998 * 119.62213 * 180.02562 * 5 4 3 30 30 H 1.08000 * 125.61671 * 0.02562 * 7 6 5 31 31 H 1.09002 * 109.47379 * 59.99489 * 12 11 9 32 32 H 1.09001 * 109.46782 * 299.99572 * 12 11 9 33 33 H 1.09001 * 109.47194 * 299.99482 * 13 12 11 34 34 H 1.08992 * 109.47399 * 59.99654 * 13 12 11 35 35 H 0.97000 * 119.99684 * 179.97438 * 17 16 14 36 36 H 1.07998 * 126.57216 * 179.76122 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1715 0.0000 4 6 3.6007 1.1566 -0.0005 5 6 4.2729 -0.0089 -0.0006 6 7 3.6007 -1.2077 -0.0006 7 6 4.0505 -2.4815 -0.0010 8 6 2.9652 -3.3360 -0.0002 9 6 3.0123 -4.8088 -0.0009 10 8 1.9798 -5.4497 -0.0005 11 8 4.2002 -5.4450 -0.0018 12 6 4.1706 -6.8967 -0.0018 13 6 5.6024 -7.4360 -0.0036 14 6 5.5716 -8.9427 -0.0030 15 1 4.6255 -9.4634 -0.0019 16 6 6.7513 -9.6563 -0.0049 17 7 6.7245 -10.9711 -0.0038 18 14 8.3878 -8.7555 -0.0074 19 1 8.8236 -8.5168 1.3920 20 1 9.4051 -9.5790 -0.7090 21 1 8.2357 -7.4546 -0.7072 22 6 1.8019 -2.5349 -0.0049 23 6 2.2211 -1.2204 0.0000 24 1 -0.3632 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6603 2.1112 0.0004 28 1 4.1459 2.0888 -0.0001 29 1 5.3528 -0.0023 -0.0006 30 1 5.0878 -2.7822 -0.0011 31 1 3.6487 -7.2495 -0.8914 32 1 3.6501 -7.2494 0.8886 33 1 6.1224 -7.0832 -0.8942 34 1 6.1246 -7.0832 0.8857 35 1 7.5545 -11.4732 -0.0055 36 1 0.7800 -2.8843 -0.0093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924486068.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:06 Heat of formation + Delta-G solvation = -41.929356 kcal Electronic energy + Delta-G solvation = -19507.465459 eV Core-core repulsion = 16342.651881 eV Total energy + Delta-G solvation = -3164.813578 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.30351 -41.17648 -37.90592 -37.45590 -35.38719 -35.08805 -32.86143 -31.51370 -29.65292 -27.85543 -27.37058 -25.14944 -23.00760 -22.75621 -22.47250 -21.15876 -19.23793 -18.69512 -18.30961 -17.56490 -17.23993 -16.87359 -16.47762 -16.30891 -15.97327 -15.11743 -15.10951 -14.86367 -14.47892 -14.19977 -14.13135 -13.75276 -13.33846 -13.27217 -13.09949 -12.60735 -12.49699 -12.45389 -12.35994 -12.10553 -11.81067 -11.65218 -11.52771 -11.44558 -11.15305 -10.81034 -9.71320 -8.35757 -8.34134 -6.42629 -0.30526 0.29604 0.83272 1.38389 1.40583 1.48865 1.53535 1.86474 2.17850 2.35090 2.50603 3.00612 3.43468 3.70173 3.82684 3.97872 4.08399 4.15629 4.17011 4.19643 4.31916 4.45348 4.61874 4.72206 4.79531 4.79746 4.86416 5.05260 5.13632 5.23069 5.28931 5.31529 5.43570 5.49613 5.52176 5.56387 5.84712 6.16036 6.22646 6.63345 6.74251 7.22303 8.82181 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034016 B = 0.003340 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.949462 B = 8381.333174 C = 9178.532855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.065 4.065 3 C -0.129 4.129 4 C -0.120 4.120 5 C 0.015 3.985 6 N -0.340 5.340 7 C 0.024 3.976 8 C -0.188 4.188 9 C 0.530 3.470 10 O -0.548 6.548 11 O -0.354 6.354 12 C 0.093 3.907 13 C -0.001 4.001 14 C -0.544 4.544 15 H 0.034 0.966 16 C 0.011 3.989 17 N -0.946 5.946 18 Si 0.957 3.043 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.242 1.242 22 C -0.158 4.158 23 C 0.025 3.975 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.063 0.937 27 H 0.165 0.835 28 H 0.185 0.815 29 H 0.194 0.806 30 H 0.206 0.794 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.271 0.729 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.526 32.876 0.006 33.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.066 4.066 3 C -0.149 4.149 4 C -0.139 4.139 5 C -0.101 4.101 6 N -0.003 5.003 7 C -0.111 4.111 8 C -0.194 4.194 9 C 0.377 3.623 10 O -0.440 6.440 11 O -0.270 6.270 12 C 0.020 3.980 13 C -0.038 4.038 14 C -0.582 4.582 15 H 0.052 0.948 16 C -0.187 4.187 17 N -0.585 5.585 18 Si 0.779 3.221 19 H -0.187 1.187 20 H -0.206 1.206 21 H -0.165 1.165 22 C -0.181 4.181 23 C -0.080 4.080 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.082 0.918 27 H 0.183 0.817 28 H 0.203 0.797 29 H 0.211 0.789 30 H 0.223 0.777 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.500 32.669 0.003 33.129 hybrid contribution 0.348 -1.108 0.026 1.161 sum -5.153 31.561 0.029 31.979 Atomic orbital electron populations 1.20788 0.88264 1.04099 1.03541 1.19694 0.97695 0.89583 0.99637 1.21332 0.94355 0.98353 1.00830 1.21288 0.94790 0.98084 0.99751 1.22423 1.00252 0.82116 1.05323 1.41536 1.07247 1.06072 1.45428 1.22509 1.00201 0.80270 1.08120 1.18681 0.95698 0.87959 1.17031 1.20740 0.81258 0.88619 0.71669 1.90783 1.35886 1.68930 1.48435 1.86504 1.32877 1.24011 1.83630 1.22986 1.00134 0.73764 1.01113 1.19454 0.91807 0.93960 0.98622 1.21124 0.93864 0.90707 1.52483 0.94804 1.25985 1.03842 0.95550 0.93355 1.70048 1.29362 1.07700 1.51389 0.85567 0.77445 0.79554 0.79577 1.18707 1.20592 1.16540 1.21084 0.98156 0.89734 1.09160 1.18893 0.82559 0.95065 1.11491 0.89887 0.88619 0.91805 0.81743 0.79736 0.78933 0.77727 0.92546 0.92528 0.94419 0.94529 0.92029 0.83035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.91 71.24 0.71 -0.58 16 2 C -0.07 -1.05 5.91 -19.67 -0.12 -1.17 16 3 C -0.13 -1.36 9.72 22.32 0.22 -1.14 16 4 C -0.12 -1.04 9.97 22.06 0.22 -0.82 16 5 C 0.02 0.19 10.89 82.97 0.90 1.09 16 6 N -0.34 -7.10 2.92 -345.02 -1.01 -8.10 16 7 C 0.02 0.58 11.41 84.17 0.96 1.54 16 8 C -0.19 -5.95 6.12 -20.16 -0.12 -6.07 16 9 C 0.53 20.75 7.96 70.22 0.56 21.31 16 10 O -0.55 -24.63 16.71 19.77 0.33 -24.30 16 11 O -0.35 -14.25 10.05 -56.62 -0.57 -14.81 16 12 C 0.09 4.25 5.41 71.98 0.39 4.64 16 13 C 0.00 -0.05 4.42 29.85 0.13 0.08 16 14 C -0.54 -32.17 9.66 25.60 0.25 -31.92 16 15 H 0.03 2.21 7.99 -2.91 -0.02 2.18 16 16 C 0.01 0.62 5.47 84.65 0.46 1.08 16 17 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 18 Si 0.96 43.63 27.47 68.60 1.88 45.52 16 19 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 22 C -0.16 -4.48 10.27 22.95 0.24 -4.25 16 23 C 0.02 0.57 6.60 38.90 0.26 0.83 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.10 0.65 8.09 -2.39 -0.02 0.63 16 26 H 0.06 0.88 7.69 -2.39 -0.02 0.86 16 27 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 28 H 0.19 0.17 8.06 -2.91 -0.02 0.15 16 29 H 0.19 1.12 8.06 -2.91 -0.02 1.09 16 30 H 0.21 4.04 8.06 -2.91 -0.02 4.02 16 31 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.04 1.77 7.20 -2.39 -0.02 1.75 16 34 H 0.04 1.69 7.57 -2.39 -0.02 1.67 16 35 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 36 H 0.15 4.16 7.93 -2.91 -0.02 4.13 16 Total: -1.00 -77.05 316.98 7.01 -70.04 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 1.02 Total: 6.25 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 5.05 Total: -15.36 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: -0.71 Total: -67.33 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -0.24 Total: -39.12 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.52 kcal Total: -77.05 7.01 -70.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924486068.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.109 kcal (2) G-P(sol) polarization free energy of solvation -77.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds