Wall clock time and date at job start Mon Mar 30 2020 00:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99742 * 2 1 4 4 H 1.48497 * 109.47406 * 239.99779 * 3 2 1 5 5 H 1.48501 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47290 * 119.99621 * 3 2 1 7 7 C 1.37877 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99783 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.46930 * 179.97438 * 9 7 2 11 11 C 1.38280 * 119.92698 * 89.99679 * 10 9 7 12 12 C 1.38121 * 120.07034 * 180.02562 * 11 10 9 13 13 C 1.38868 * 119.92562 * 0.02562 * 12 11 10 14 14 N 1.39929 * 120.06990 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99726 * 35.08519 * 14 13 12 16 16 O 1.21290 * 120.00208 * 355.38011 * 15 14 13 17 17 C 1.50706 * 119.99745 * 175.38128 * 15 14 13 18 18 C 1.53838 * 113.74383 * 81.07751 * 17 15 14 19 19 C 1.51579 * 86.75757 * 89.69695 * 18 17 15 20 20 O 1.20760 * 135.78614 * 205.13501 * 19 18 17 21 21 C 1.51590 * 88.43648 * 25.15346 * 19 18 17 22 22 C 1.38872 * 119.86143 * 0.25576 * 13 12 11 23 23 C 1.38108 * 119.92895 * 359.46754 * 22 13 12 24 24 H 0.96998 * 120.00296 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47122 * 59.99808 * 9 7 2 26 26 H 1.08997 * 109.46919 * 299.99222 * 9 7 2 27 27 H 1.07998 * 119.96899 * 0.02562 * 11 10 9 28 28 H 1.07994 * 120.03203 * 180.02562 * 12 11 10 29 29 H 0.96997 * 119.99998 * 215.09152 * 14 13 12 30 30 H 1.09003 * 112.88154 * 309.66384 * 17 15 14 31 31 H 1.08998 * 113.66669 * 204.16566 * 18 17 15 32 32 H 1.09007 * 113.66782 * 335.23431 * 18 17 15 33 33 H 1.08991 * 113.67079 * 220.37971 * 21 19 18 34 34 H 1.08998 * 113.66092 * 89.30615 * 21 19 18 35 35 H 1.08005 * 120.03283 * 179.74847 * 22 13 12 36 36 H 1.08004 * 119.96658 * 180.27078 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2305 -3.6446 0.0005 11 6 2.6788 -4.1688 1.1990 12 6 3.5768 -5.2183 1.2024 13 6 4.0298 -5.7465 0.0006 14 7 4.9399 -6.8093 0.0006 15 6 4.8684 -7.7578 0.9555 16 8 4.0703 -7.6467 1.8620 17 6 5.7800 -8.9564 0.8967 18 6 7.1935 -8.6868 1.4407 19 6 6.6591 -9.1070 2.7954 20 8 6.9491 -8.8863 3.9467 21 6 5.6030 -9.9250 2.0788 22 6 3.5820 -5.2138 -1.2012 23 6 2.6797 -4.1683 -1.1979 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6243 -2.5567 0.8903 27 1 2.3265 -3.7574 2.1333 28 1 3.9263 -5.6275 2.1387 29 1 5.6224 -6.8634 -0.6866 30 1 5.7721 -9.4477 -0.0763 31 1 7.9518 -9.3602 1.0413 32 1 7.4883 -7.6384 1.3926 33 1 4.6187 -9.8726 2.5439 34 1 5.9153 -10.9458 1.8585 35 1 3.9356 -5.6198 -2.1375 36 1 2.3277 -3.7564 -2.1322 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928402689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:36 Heat of formation + Delta-G solvation = -24.880082 kcal Electronic energy + Delta-G solvation = -19652.986841 eV Core-core repulsion = 16488.912575 eV Total energy + Delta-G solvation = -3164.074266 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.22010 -39.57420 -38.17565 -36.22614 -34.97743 -33.03497 -30.58897 -30.33219 -27.20262 -26.57623 -25.32123 -23.09603 -22.41723 -21.08522 -20.19852 -19.19452 -17.56549 -17.27599 -16.44696 -16.30960 -15.82900 -15.49053 -15.07353 -14.89061 -14.33786 -14.22276 -13.97690 -13.14652 -12.99068 -12.87400 -12.62856 -12.34329 -12.09572 -11.97153 -11.69550 -11.40977 -11.29495 -10.85096 -10.63446 -10.40843 -10.11167 -9.89147 -9.79016 -9.44354 -9.31056 -8.42453 -8.32624 -7.45565 -6.03926 -4.08261 1.56165 1.75757 2.02352 2.48372 2.90562 3.31963 3.36174 3.39222 3.40955 3.81776 4.29270 4.33001 4.40364 4.54639 4.68789 4.86035 4.93526 5.17519 5.29723 5.33639 5.39840 5.52103 5.54850 5.88618 6.00951 6.07732 6.16459 6.61358 6.72288 6.84562 7.12008 7.13316 7.18082 7.39416 7.50014 7.66946 7.84808 7.91516 8.03415 8.31670 8.96770 9.55500 11.05690 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.034257 B = 0.003312 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.162539 B = 8452.880904 C = 8675.176934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.047 3.953 10 C -0.039 4.039 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.097 3.903 14 N -0.661 5.661 15 C 0.519 3.481 16 O -0.514 6.514 17 C -0.129 4.129 18 C -0.180 4.180 19 C 0.361 3.639 20 O -0.419 6.419 21 C -0.174 4.174 22 C -0.140 4.140 23 C -0.109 4.109 24 H 0.263 0.737 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.407 0.593 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.127 0.873 35 H 0.115 0.885 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.543 -19.700 -2.748 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.040 4.040 11 C -0.128 4.128 12 C -0.136 4.136 13 C 0.005 3.995 14 N -0.306 5.306 15 C 0.305 3.695 16 O -0.389 6.389 17 C -0.150 4.150 18 C -0.218 4.218 19 C 0.233 3.767 20 O -0.289 6.289 21 C -0.212 4.212 22 C -0.160 4.160 23 C -0.128 4.128 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.140 0.860 28 H 0.145 0.855 29 H 0.242 0.758 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.145 0.855 35 H 0.133 0.867 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.974 -19.419 -1.454 23.400 hybrid contribution 0.745 0.957 -0.636 1.370 sum 13.719 -18.462 -2.090 23.096 Atomic orbital electron populations 1.69947 1.06037 1.26952 1.50367 1.25014 0.94886 0.99253 0.95171 0.86591 0.79529 0.82806 0.78718 1.20183 1.21232 1.20154 1.21024 0.93010 0.89877 1.51184 0.92509 1.18359 0.92573 0.89561 0.98444 1.20746 0.96237 0.95116 0.91852 1.21036 0.97557 0.95632 0.98596 1.21124 0.99211 0.96335 0.96921 1.17522 0.96384 0.91121 0.94448 1.43265 1.33234 1.23475 1.30599 1.20117 0.84024 0.83242 0.82137 1.90760 1.37631 1.77100 1.33417 1.22074 0.95383 0.95717 1.01862 1.24069 0.96666 1.05206 0.95850 1.25625 0.83585 0.78604 0.88869 1.90445 1.63734 1.53555 1.21139 1.23959 1.02818 0.99724 0.94667 1.20746 1.00158 0.99657 0.95470 1.20896 0.97405 0.95921 0.98582 0.92764 0.95280 0.95258 0.86033 0.85507 0.75802 0.85744 0.85166 0.88415 0.87237 0.85538 0.86730 0.85925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.36 9.09 -34.44 -0.31 -14.68 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.05 1.23 5.10 -29.03 -0.15 1.08 16 10 C -0.04 -0.85 5.07 -104.59 -0.53 -1.38 16 11 C -0.11 -2.25 9.69 -39.61 -0.38 -2.63 16 12 C -0.12 -2.15 8.70 -39.39 -0.34 -2.49 16 13 C 0.10 1.54 6.30 -83.69 -0.53 1.02 16 14 N -0.66 -7.51 5.34 -9.86 -0.05 -7.56 16 15 C 0.52 6.08 6.94 -10.98 -0.08 6.00 16 16 O -0.51 -8.38 13.27 5.55 0.07 -8.31 16 17 C -0.13 -0.84 4.36 -90.98 -0.40 -1.23 16 18 C -0.18 -1.01 7.64 -27.02 -0.21 -1.22 16 19 C 0.36 3.48 8.82 -28.25 -0.25 3.23 16 20 O -0.42 -5.87 17.99 6.00 0.11 -5.76 16 21 C -0.17 -1.21 7.44 -27.01 -0.20 -1.41 16 22 C -0.14 -2.20 9.97 -39.39 -0.39 -2.59 16 23 C -0.11 -2.07 9.69 -39.61 -0.38 -2.46 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 26 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 27 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 28 H 0.13 2.37 6.22 -52.49 -0.33 2.04 16 29 H 0.41 2.99 8.82 -40.82 -0.36 2.63 16 30 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.11 1.01 7.40 -51.93 -0.38 0.63 16 34 H 0.13 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.11 1.40 8.06 -52.48 -0.42 0.97 16 36 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 316.37 15.07 4.77 4.77 Total: -1.00 -34.86 316.37 -8.05 -42.90 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.41 Total: 0.38 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -4.25 Total: -17.22 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.68 Total: -33.30 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.18 Total: -14.07 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.86 -8.05 -42.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928402689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.025 kcal (2) G-P(sol) polarization free energy of solvation -34.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds