Wall clock time and date at job start Mon Mar 30 2020 01:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36652 * 120.14640 * 2 1 4 4 C 1.38788 * 120.44846 * 179.97438 * 3 2 1 5 5 C 1.37841 * 120.74103 * 0.02562 * 4 3 2 6 6 C 1.38982 * 119.85427 * 359.95901 * 5 4 3 7 7 O 1.34716 * 133.24764 * 180.40160 * 6 5 4 8 8 C 1.34947 * 110.86711 * 180.11175 * 7 6 5 9 9 C 1.46979 * 125.12997 * 179.80884 * 8 7 6 10 10 O 1.21651 * 119.99798 * 173.47530 * 9 8 7 11 11 N 1.34776 * 119.99918 * 353.75472 * 9 8 7 12 12 C 1.46506 * 119.99604 * 354.20684 * 11 9 8 13 13 C 1.46497 * 119.99962 * 174.21401 * 11 9 8 14 14 C 1.50703 * 109.47227 * 89.99798 * 13 11 9 15 15 H 1.08001 * 119.99897 * 359.97438 * 14 13 11 16 16 C 1.37872 * 120.00208 * 179.97438 * 14 13 11 17 17 N 1.31518 * 119.99674 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00014 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46792 * 90.00677 * 18 16 14 20 20 H 1.48505 * 109.46836 * 209.99972 * 18 16 14 21 21 H 1.48491 * 109.47164 * 330.00055 * 18 16 14 22 22 C 1.35814 * 109.74270 * 359.54925 * 8 7 6 23 23 C 1.39665 * 120.14225 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47540 * 270.02344 * 1 2 3 25 25 H 1.09001 * 109.47494 * 30.02551 * 1 2 3 26 26 H 1.09005 * 109.47392 * 150.01679 * 1 2 3 27 27 H 1.08002 * 119.77563 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.62966 * 180.02562 * 4 3 2 29 29 H 1.07992 * 120.07243 * 180.02562 * 5 4 3 30 30 H 1.09006 * 109.46659 * 85.28598 * 12 11 9 31 31 H 1.09002 * 109.46767 * 205.27989 * 12 11 9 32 32 H 1.08994 * 109.47482 * 325.28391 * 12 11 9 33 33 H 1.08999 * 109.46934 * 209.99383 * 13 11 9 34 34 H 1.08995 * 109.47315 * 329.99980 * 13 11 9 35 35 H 0.97007 * 119.99574 * 179.97438 * 17 16 14 36 36 H 1.07997 * 126.95872 * 180.24689 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1817 0.0000 4 6 3.5811 1.1890 0.0005 5 6 4.2920 0.0080 0.0005 6 6 3.6160 -1.2063 0.0009 7 8 4.0244 -2.4901 0.0078 8 6 2.9686 -3.3305 0.0022 9 6 3.0554 -4.7977 0.0032 10 8 2.0458 -5.4667 0.1174 11 7 4.2542 -5.4019 -0.1168 12 6 5.4546 -4.6027 -0.3752 13 6 4.3568 -6.8576 0.0111 14 6 4.1827 -7.4945 -1.3436 15 1 4.0121 -6.8766 -2.2129 16 6 4.2410 -8.8658 -1.4734 17 7 4.4482 -9.6182 -0.4148 18 14 4.0244 -9.6552 -3.1525 19 1 5.3482 -9.7853 -3.8127 20 1 3.4168 -11.0008 -2.9922 21 1 3.1361 -8.8072 -3.9872 22 6 1.8136 -2.6160 0.0011 23 6 2.2083 -1.2078 0.0005 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3634 -0.8902 -0.5136 27 1 1.6520 2.1163 0.0004 28 1 4.1101 2.1306 0.0009 29 1 5.3717 0.0263 0.0014 30 1 5.8564 -4.2349 0.5690 31 1 6.2024 -5.2207 -0.8722 32 1 5.1981 -3.7581 -1.0146 33 1 5.3361 -7.1190 0.4122 34 1 3.5800 -7.2188 0.6849 35 1 4.4889 -10.5831 -0.5060 36 1 0.8074 -3.0084 0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930594251.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:14 Heat of formation + Delta-G solvation = -25.252147 kcal Electronic energy + Delta-G solvation = -20269.089374 eV Core-core repulsion = 17104.998974 eV Total energy + Delta-G solvation = -3164.090400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.58591 -40.60929 -39.05610 -36.87817 -34.78081 -34.33606 -32.58710 -31.19846 -29.71581 -27.89755 -27.46413 -25.82058 -23.77819 -23.57622 -21.67580 -20.91653 -18.85965 -18.69400 -18.17767 -17.53776 -17.30356 -16.78995 -16.40269 -15.90209 -15.71952 -14.90222 -14.66099 -14.50395 -14.36174 -14.28288 -14.05087 -13.92010 -13.50649 -13.20502 -13.15534 -12.87029 -12.63823 -12.59766 -12.45612 -12.26462 -11.89276 -11.77451 -11.27245 -11.19766 -10.66827 -9.72922 -9.58680 -9.11664 -8.26087 -6.41187 -0.46426 0.36112 0.81739 1.36198 1.38975 1.40099 1.50231 2.03530 2.20139 2.39061 2.69483 3.03835 3.28263 3.56312 3.87769 3.93607 4.15477 4.18603 4.31059 4.40792 4.52801 4.58059 4.72232 4.75697 4.80315 4.84764 4.88518 5.03521 5.11903 5.25713 5.28778 5.40216 5.42965 5.55127 5.62344 5.73178 5.98168 6.06423 6.45652 6.65050 7.01167 7.29805 8.81522 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.033099 B = 0.004045 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.738759 B = 6921.076720 C = 7248.411161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.038 4.038 3 C -0.140 4.140 4 C -0.067 4.067 5 C -0.128 4.128 6 C 0.043 3.957 7 O -0.182 6.182 8 C -0.035 4.035 9 C 0.576 3.424 10 O -0.564 6.564 11 N -0.594 5.594 12 C 0.084 3.916 13 C 0.259 3.741 14 C -0.548 4.548 15 H 0.051 0.949 16 C 0.012 3.988 17 N -0.925 5.925 18 Si 0.970 3.030 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.275 1.275 22 C -0.117 4.117 23 C -0.164 4.164 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.165 0.835 28 H 0.176 0.824 29 H 0.153 0.847 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.006 0.994 35 H 0.269 0.731 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.199 25.270 0.364 25.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.038 4.038 3 C -0.158 4.158 4 C -0.085 4.085 5 C -0.146 4.146 6 C -0.005 4.005 7 O -0.085 6.085 8 C -0.085 4.085 9 C 0.363 3.637 10 O -0.445 6.445 11 N -0.323 5.323 12 C -0.057 4.057 13 C 0.138 3.862 14 C -0.587 4.587 15 H 0.070 0.930 16 C -0.188 4.188 17 N -0.565 5.565 18 Si 0.794 3.206 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.200 1.200 22 C -0.138 4.138 23 C -0.165 4.165 24 H 0.101 0.899 25 H 0.113 0.887 26 H 0.078 0.922 27 H 0.182 0.818 28 H 0.193 0.807 29 H 0.171 0.829 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.025 0.975 35 H 0.078 0.922 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.356 24.608 0.491 24.651 hybrid contribution -0.180 -1.272 -0.552 1.398 sum -1.536 23.337 -0.061 23.387 Atomic orbital electron populations 1.20890 0.89212 1.03900 1.03463 1.19548 0.97467 0.90350 0.96449 1.21132 0.94666 0.97882 1.02082 1.21493 0.94123 0.97760 0.95081 1.20392 1.01575 0.86866 1.05750 1.20462 0.93510 0.84469 1.02051 1.84229 1.33285 1.14482 1.76475 1.21722 0.86636 0.89699 1.10394 1.17202 0.84071 0.84284 0.78120 1.90802 1.36214 1.64245 1.53273 1.48144 1.07441 1.09404 1.67301 1.21963 0.86572 0.95205 1.02009 1.18963 0.96581 0.74099 0.96520 1.21637 1.50443 0.92471 0.94113 0.93029 1.25839 0.94225 0.97445 1.01287 1.70042 1.49720 1.05760 1.30954 0.85379 0.78878 0.77524 0.78815 1.18685 1.20268 1.19973 1.22844 0.98682 0.91366 1.00942 1.19942 0.93572 0.93316 1.09660 0.89892 0.88663 0.92189 0.81798 0.80654 0.82883 0.91095 0.90001 0.90237 0.94702 0.97542 0.92167 0.81456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 9.96 71.24 0.71 -1.10 16 2 C -0.04 -0.77 5.88 -19.89 -0.12 -0.88 16 3 C -0.14 -1.99 9.63 22.03 0.21 -1.78 16 4 C -0.07 -0.89 10.01 22.31 0.22 -0.67 16 5 C -0.13 -2.44 10.07 22.35 0.23 -2.21 16 6 C 0.04 1.19 7.41 23.07 0.17 1.36 16 7 O -0.18 -6.03 7.38 -13.00 -0.10 -6.13 16 8 C -0.03 -1.33 6.66 24.00 0.16 -1.17 16 9 C 0.58 27.30 7.63 86.53 0.66 27.96 16 10 O -0.56 -31.08 16.47 -4.19 -0.07 -31.15 16 11 N -0.59 -27.89 2.86 -855.55 -2.44 -30.34 16 12 C 0.08 3.01 9.30 127.77 1.19 4.20 16 13 C 0.26 14.44 5.10 85.63 0.44 14.87 16 14 C -0.55 -32.47 9.39 25.60 0.24 -32.23 16 15 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 16 C 0.01 0.67 5.46 84.65 0.46 1.13 16 17 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 18 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 19 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 22 C -0.12 -3.94 10.52 23.79 0.25 -3.69 16 23 C -0.16 -4.57 6.15 -20.23 -0.12 -4.69 16 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 26 H 0.06 1.05 7.91 -2.38 -0.02 1.03 16 27 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 28 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 29 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.08 2.85 8.04 -2.39 -0.02 2.84 16 32 H 0.08 2.62 5.94 -2.39 -0.01 2.61 16 33 H 0.04 1.93 8.07 -2.39 -0.02 1.92 16 34 H 0.01 0.41 7.50 -2.39 -0.02 0.39 16 35 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 36 H 0.17 5.33 8.06 -2.91 -0.02 5.31 16 Total: -1.00 -75.13 314.17 5.48 -69.64 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 1.09 Total: 5.25 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 4.70 Total: 1.11 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -2.16 Total: -86.21 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -0.16 Total: -37.27 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -75.13 5.48 -69.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930594251.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.389 kcal (2) G-P(sol) polarization free energy of solvation -75.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds