Wall clock time and date at job start Mon Mar 30 2020 01:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36652 * 120.14689 * 2 1 4 4 C 1.38790 * 120.44549 * 180.02562 * 3 2 1 5 5 C 1.37838 * 120.74189 * 0.02562 * 4 3 2 6 6 C 1.38987 * 119.85734 * 359.97438 * 5 4 3 7 7 O 1.34713 * 133.25188 * 180.02562 * 6 5 4 8 8 C 1.34948 * 110.86416 * 180.02562 * 7 6 5 9 9 C 1.46976 * 125.12468 * 179.97438 * 8 7 6 10 10 O 1.21658 * 119.99668 * 180.02562 * 9 8 7 11 11 N 1.34777 * 120.00207 * 0.03133 * 9 8 7 12 12 C 1.46506 * 120.00033 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46566 * 324.99334 * 12 11 9 14 14 C 1.52997 * 109.47289 * 84.99600 * 12 11 9 15 15 C 1.50697 * 109.47015 * 205.00057 * 12 11 9 16 16 H 1.07998 * 120.00039 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99815 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99524 * 179.97438 * 17 15 12 19 19 Si 1.86794 * 120.00267 * 359.97438 * 17 15 12 20 20 H 1.48506 * 109.46589 * 89.99875 * 19 17 15 21 21 H 1.48490 * 109.47303 * 209.99928 * 19 17 15 22 22 H 1.48497 * 109.46869 * 330.00523 * 19 17 15 23 23 C 1.35802 * 109.74651 * 0.23253 * 8 7 6 24 24 C 1.39665 * 120.14042 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47037 * 269.97960 * 1 2 3 26 26 H 1.09002 * 109.47345 * 29.97277 * 1 2 3 27 27 H 1.08994 * 109.47620 * 149.97847 * 1 2 3 28 28 H 1.08001 * 119.77746 * 0.04541 * 3 2 1 29 29 H 1.08002 * 119.63178 * 179.97438 * 4 3 2 30 30 H 1.08003 * 120.07210 * 180.02562 * 5 4 3 31 31 H 0.96992 * 119.99904 * 359.97438 * 11 9 8 32 32 H 1.09002 * 109.47153 * 179.97438 * 14 12 11 33 33 H 1.09001 * 109.46832 * 60.00146 * 14 12 11 34 34 H 1.09004 * 109.47261 * 300.00128 * 14 12 11 35 35 H 0.97001 * 119.99599 * 179.97438 * 18 17 15 36 36 H 1.07999 * 126.95934 * 179.76348 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1817 0.0000 4 6 3.5812 1.1889 -0.0005 5 6 4.2919 0.0079 -0.0016 6 6 3.6159 -1.2065 -0.0016 7 8 4.0243 -2.4902 -0.0021 8 6 2.9683 -3.3305 -0.0024 9 6 3.0551 -4.7977 -0.0035 10 8 2.0393 -5.4671 -0.0042 11 7 4.2601 -5.4015 -0.0035 12 6 4.3466 -6.8640 -0.0052 13 1 3.5274 -7.2770 0.5835 14 6 4.2518 -7.3789 -1.4428 15 6 5.6613 -7.2901 0.5955 16 1 6.3625 -6.5460 0.9432 17 6 5.9690 -8.6300 0.7011 18 7 7.1166 -9.0018 1.2248 19 14 4.7558 -9.9171 0.1003 20 1 5.0251 -10.2224 -1.3279 21 1 4.9061 -11.1541 0.9078 22 1 3.3720 -9.3977 0.2430 23 6 1.8135 -2.6160 -0.0074 24 6 2.2083 -1.2078 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8897 -0.5141 28 1 1.6521 2.1163 0.0007 29 1 4.1103 2.1305 -0.0009 30 1 5.3718 0.0262 -0.0016 31 1 5.0700 -4.8678 -0.0033 32 1 4.3166 -8.4670 -1.4440 33 1 5.0710 -6.9659 -2.0313 34 1 3.3008 -7.0707 -1.8772 35 1 7.3329 -9.9444 1.2994 36 1 0.8073 -3.0083 -0.0124 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931157870.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:18 Heat of formation + Delta-G solvation = -10.003114 kcal Electronic energy + Delta-G solvation = -20056.154042 eV Core-core repulsion = 16892.724890 eV Total energy + Delta-G solvation = -3163.429152 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.50295 -39.12082 -38.17455 -35.21724 -33.45755 -32.49401 -31.63953 -30.55223 -29.30456 -27.01884 -25.26613 -24.07806 -22.75741 -21.31613 -20.63287 -19.91937 -18.38877 -17.23149 -16.53242 -16.34495 -16.04894 -15.47920 -15.04364 -14.45076 -14.18865 -13.93637 -13.74730 -13.42671 -13.16125 -13.07325 -12.95470 -12.52152 -12.24204 -11.95183 -11.86376 -11.81736 -11.37252 -11.12252 -10.86623 -10.23441 -10.16136 -9.95027 -9.52061 -9.29620 -8.82210 -8.75452 -8.39900 -8.13699 -6.23578 -4.27074 0.54730 1.20133 1.88893 2.53006 3.21488 3.33707 3.37223 3.47178 3.54324 3.66540 4.28821 4.38773 4.62228 4.64328 4.93120 4.97895 5.10606 5.14490 5.22665 5.36181 5.39723 5.52336 5.58516 5.81800 6.02231 6.11114 6.23385 6.25507 6.30265 6.33592 6.45523 6.48421 6.76561 6.93189 7.13801 7.14834 7.42072 8.02804 8.40758 8.59482 8.76927 9.35630 10.88481 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.037008 B = 0.003930 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.413842 B = 7123.261654 C = 7679.707523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.030 4.030 3 C -0.145 4.145 4 C -0.085 4.085 5 C -0.115 4.115 6 C 0.070 3.930 7 O -0.181 6.181 8 C -0.006 4.006 9 C 0.583 3.417 10 O -0.530 6.530 11 N -0.682 5.682 12 C 0.235 3.765 13 H 0.053 0.947 14 C -0.163 4.163 15 C -0.538 4.538 16 H 0.082 0.918 17 C 0.080 3.920 18 N -0.890 5.890 19 Si 0.885 3.115 20 H -0.275 1.275 21 H -0.293 1.293 22 H -0.261 1.261 23 C -0.130 4.130 24 C -0.140 4.140 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.128 0.872 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.403 0.597 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.037 0.963 35 H 0.268 0.732 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.341 19.746 -3.524 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.030 4.030 3 C -0.163 4.163 4 C -0.103 4.103 5 C -0.133 4.133 6 C 0.021 3.979 7 O -0.082 6.082 8 C -0.056 4.056 9 C 0.367 3.633 10 O -0.409 6.409 11 N -0.328 5.328 12 C 0.132 3.868 13 H 0.071 0.929 14 C -0.221 4.221 15 C -0.576 4.576 16 H 0.100 0.900 17 C -0.124 4.124 18 N -0.527 5.527 19 Si 0.715 3.285 20 H -0.202 1.202 21 H -0.220 1.220 22 H -0.186 1.186 23 C -0.150 4.150 24 C -0.141 4.141 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.146 0.854 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.237 0.763 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.615 18.959 -3.466 21.538 hybrid contribution -0.079 -0.489 -0.304 0.581 sum -9.694 18.470 -3.771 21.197 Atomic orbital electron populations 1.20819 0.90676 1.03120 1.02746 1.19143 0.96115 0.90723 0.97013 1.20639 0.94184 0.97367 1.04135 1.20925 0.93999 0.96997 0.98414 1.19985 1.00393 0.87605 1.05348 1.19768 0.92744 0.84049 1.01328 1.84077 1.34348 1.13993 1.75781 1.22467 0.85387 0.91278 1.06496 1.16778 0.85270 0.82728 0.78538 1.90840 1.35301 1.62544 1.52245 1.46222 1.06608 1.10000 1.70005 1.19250 0.99289 0.74936 0.93353 0.92909 1.22467 0.99937 1.00311 0.99367 1.21006 1.01094 0.93680 1.41790 0.90018 1.24822 0.95138 0.98229 0.94255 1.69867 1.21987 1.17014 1.43800 0.86875 0.82506 0.80855 0.78290 1.20190 1.22029 1.18585 1.22623 0.99146 0.89944 1.03325 1.19780 0.93056 0.93547 1.07708 0.90682 0.91195 0.91119 0.85369 0.84719 0.84767 0.76288 0.93129 0.92573 0.94360 0.92192 0.81484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.96 36.01 0.36 -0.60 16 2 C -0.03 -0.32 5.88 -104.66 -0.62 -0.94 16 3 C -0.15 -1.32 9.63 -39.95 -0.38 -1.70 16 4 C -0.09 -0.76 10.01 -39.52 -0.40 -1.16 16 5 C -0.11 -1.28 10.07 -39.45 -0.40 -1.67 16 6 C 0.07 0.99 7.41 -38.35 -0.28 0.71 16 7 O -0.18 -2.93 10.28 2.78 0.03 -2.90 16 8 C -0.01 -0.10 7.07 -36.92 -0.26 -0.36 16 9 C 0.58 11.71 7.76 -12.72 -0.10 11.61 16 10 O -0.53 -11.92 16.49 5.23 0.09 -11.83 16 11 N -0.68 -14.22 5.07 -56.15 -0.28 -14.50 16 12 C 0.23 5.63 2.15 -69.08 -0.15 5.48 16 13 H 0.05 1.37 6.63 -51.93 -0.34 1.03 16 14 C -0.16 -3.63 8.97 37.16 0.33 -3.30 16 15 C -0.54 -14.61 9.31 -34.44 -0.32 -14.93 16 16 H 0.08 2.34 7.98 -52.49 -0.42 1.93 16 17 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 18 N -0.89 -26.32 13.96 55.43 0.77 -25.54 16 19 Si 0.89 21.55 24.38 -169.99 -4.14 17.41 16 20 H -0.28 -6.47 6.87 56.52 0.39 -6.08 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 23 C -0.13 -1.94 10.51 -37.24 -0.39 -2.34 16 24 C -0.14 -1.91 6.15 -105.19 -0.65 -2.56 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 27 H 0.07 0.59 7.91 -51.93 -0.41 0.18 16 28 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 30 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.40 7.72 8.25 -40.82 -0.34 7.38 16 32 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.17 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 308.07 15.07 4.64 4.64 Total: -1.00 -31.30 308.07 -6.49 -37.79 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.24 Total: 4.57 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -3.35 Total: -9.63 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.49 Total: -40.05 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.11 Total: -14.73 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.14 Total: 17.41 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.30 -6.49 -37.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931157870.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.783 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds