Wall clock time and date at job start Mon Mar 30 2020 01:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36663 * 120.14386 * 2 1 4 4 C 1.38796 * 120.44439 * 179.97438 * 3 2 1 5 5 C 1.37840 * 120.74067 * 0.02562 * 4 3 2 6 6 C 1.38983 * 119.85803 * 0.25319 * 5 4 3 7 7 O 1.34721 * 133.24854 * 180.42108 * 6 5 4 8 8 C 1.34949 * 110.86478 * 179.54150 * 7 6 5 9 9 C 1.46979 * 125.12882 * 179.73517 * 8 7 6 10 10 O 1.21653 * 120.00198 * 180.02562 * 9 8 7 11 11 N 1.34769 * 119.99656 * 0.02775 * 9 8 7 12 12 C 1.46508 * 119.99901 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.46815 * 34.99592 * 12 11 9 14 14 C 1.53001 * 109.46742 * 274.99882 * 12 11 9 15 15 C 1.50695 * 109.47278 * 154.99757 * 12 11 9 16 16 H 1.08007 * 119.99956 * 35.00413 * 15 12 11 17 17 C 1.37874 * 120.00128 * 214.99922 * 15 12 11 18 18 N 1.31513 * 120.00151 * 184.91285 * 17 15 12 19 19 Si 1.86796 * 120.00009 * 4.91947 * 17 15 12 20 20 H 1.48508 * 109.47243 * 84.82723 * 19 17 15 21 21 H 1.48501 * 109.47291 * 204.82976 * 19 17 15 22 22 H 1.48495 * 109.47138 * 324.83247 * 19 17 15 23 23 C 1.35811 * 109.74494 * 359.75785 * 8 7 6 24 24 C 1.39668 * 120.14815 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46857 * 90.00222 * 1 2 3 26 26 H 1.09002 * 109.47073 * 210.00003 * 1 2 3 27 27 H 1.08999 * 109.47105 * 330.00040 * 1 2 3 28 28 H 1.07996 * 119.77714 * 0.02562 * 3 2 1 29 29 H 1.07995 * 119.62830 * 179.97438 * 4 3 2 30 30 H 1.07995 * 120.06870 * 179.97438 * 5 4 3 31 31 H 0.97002 * 120.00767 * 359.97438 * 11 9 8 32 32 H 1.08998 * 109.47036 * 55.03927 * 14 12 11 33 33 H 1.09008 * 109.46580 * 175.03381 * 14 12 11 34 34 H 1.08997 * 109.47438 * 295.03479 * 14 12 11 35 35 H 0.96996 * 120.00531 * 180.02562 * 18 17 15 36 36 H 1.08001 * 126.96277 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1818 0.0000 4 6 3.5812 1.1891 0.0005 5 6 4.2920 0.0081 0.0005 6 6 3.6161 -1.2063 -0.0053 7 8 4.0245 -2.4901 0.0004 8 6 2.9686 -3.3304 0.0002 9 6 3.0554 -4.7976 0.0000 10 8 2.0396 -5.4671 -0.0006 11 7 4.2603 -5.4013 0.0006 12 6 4.3468 -6.8638 -0.0001 13 1 3.5284 -7.2759 -0.5903 14 6 4.2504 -7.3811 1.4366 15 6 5.6624 -7.2889 -0.5998 16 1 6.5483 -6.6933 -0.4357 17 6 5.7351 -8.4382 -1.3579 18 7 6.8990 -8.8615 -1.8004 19 14 4.1805 -9.3940 -1.7568 20 1 3.5337 -8.8080 -2.9584 21 1 4.5266 -10.8132 -2.0233 22 1 3.2452 -9.3203 -0.6058 23 6 1.8136 -2.6159 -0.0003 24 6 2.2084 -1.2077 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6520 2.1164 0.0004 29 1 4.1102 2.1306 0.0001 30 1 5.3718 0.0264 0.0005 31 1 5.0703 -4.8676 0.0008 32 1 3.3400 -7.0003 1.8995 33 1 4.2260 -8.4709 1.4295 34 1 5.1164 -7.0407 2.0043 35 1 6.9501 -9.6698 -2.3341 36 1 0.8073 -3.0082 -0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931157872.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:20 Heat of formation + Delta-G solvation = -18.710369 kcal Electronic energy + Delta-G solvation = -20069.928018 eV Core-core repulsion = 16906.121291 eV Total energy + Delta-G solvation = -3163.806727 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.47541 -39.06672 -38.14881 -35.09738 -33.43687 -32.46180 -31.61675 -30.50618 -29.21513 -26.99350 -25.38162 -24.00146 -22.73498 -21.17064 -20.58014 -19.84293 -18.41747 -17.21102 -16.67358 -16.31424 -16.04792 -15.40584 -14.96643 -14.28277 -14.14037 -13.91168 -13.72768 -13.40942 -13.13570 -13.08168 -12.57916 -12.54502 -12.37861 -11.89044 -11.82608 -11.56567 -11.17270 -11.10080 -10.87801 -10.66354 -10.13951 -9.94891 -9.67375 -9.27175 -8.76410 -8.73606 -8.36610 -8.09561 -6.27217 -4.31933 0.57145 1.21893 1.91729 2.55910 3.23598 3.31815 3.38100 3.49831 3.58170 3.71393 4.28880 4.40682 4.64133 4.65892 4.94777 4.99414 5.10715 5.16648 5.26469 5.39661 5.41425 5.54664 5.60544 5.83416 6.04481 6.12786 6.25188 6.27547 6.35129 6.45320 6.47849 6.60246 6.82805 6.96468 7.14227 7.27648 7.41801 8.02286 8.43714 8.65002 8.76042 9.33330 10.84312 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.031975 B = 0.004093 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.474206 B = 6839.117108 C = 7284.484623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.030 4.030 3 C -0.145 4.145 4 C -0.086 4.086 5 C -0.115 4.115 6 C 0.069 3.931 7 O -0.181 6.181 8 C -0.005 4.005 9 C 0.580 3.420 10 O -0.533 6.533 11 N -0.684 5.684 12 C 0.229 3.771 13 H 0.054 0.946 14 C -0.148 4.148 15 C -0.533 4.533 16 H 0.081 0.919 17 C 0.083 3.917 18 N -0.886 5.886 19 Si 0.874 3.126 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.259 1.259 23 C -0.132 4.132 24 C -0.139 4.139 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.401 0.599 32 H 0.030 0.970 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.269 0.731 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.936 19.226 3.929 21.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.030 4.030 3 C -0.163 4.163 4 C -0.104 4.104 5 C -0.133 4.133 6 C 0.020 3.980 7 O -0.082 6.082 8 C -0.055 4.055 9 C 0.363 3.637 10 O -0.413 6.413 11 N -0.331 5.331 12 C 0.127 3.873 13 H 0.071 0.929 14 C -0.207 4.207 15 C -0.571 4.571 16 H 0.099 0.901 17 C -0.122 4.122 18 N -0.522 5.522 19 Si 0.700 3.300 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.184 1.184 23 C -0.153 4.153 24 C -0.140 4.140 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.146 0.854 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.235 0.765 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.223 18.435 3.820 20.965 hybrid contribution -0.302 -0.265 -0.336 0.524 sum -9.525 18.170 3.484 20.809 Atomic orbital electron populations 1.20817 0.90696 1.03104 1.02729 1.19145 0.96103 0.90732 0.97064 1.20639 0.94183 0.97352 1.04160 1.20920 0.93995 0.96986 0.98496 1.19980 1.00375 0.87613 1.05343 1.19772 0.92745 0.84077 1.01365 1.84080 1.34376 1.13971 1.75749 1.22557 0.85341 0.91410 1.06227 1.16879 0.85485 0.82661 0.78634 1.90829 1.35377 1.62546 1.52572 1.46737 1.06426 1.10334 1.69576 1.19278 0.98625 0.75236 0.94168 0.92858 1.22228 0.99238 1.00865 0.98398 1.20982 0.93412 1.09970 1.32701 0.90131 1.24936 0.96226 0.96805 0.94265 1.69873 1.23978 1.23405 1.34917 0.86901 0.83790 0.79254 0.80066 1.19733 1.21027 1.18378 1.22625 0.99162 0.89938 1.03551 1.19783 0.93061 0.93552 1.07640 0.90701 0.91126 0.91208 0.85390 0.84740 0.84786 0.76499 0.95075 0.92545 0.93167 0.92120 0.81528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.96 36.00 0.36 -0.62 16 2 C -0.03 -0.34 5.88 -104.66 -0.62 -0.95 16 3 C -0.15 -1.35 9.63 -39.94 -0.38 -1.73 16 4 C -0.09 -0.78 10.01 -39.52 -0.40 -1.18 16 5 C -0.11 -1.30 10.07 -39.45 -0.40 -1.70 16 6 C 0.07 1.00 7.41 -38.35 -0.28 0.71 16 7 O -0.18 -2.98 10.28 2.75 0.03 -2.95 16 8 C -0.01 -0.09 7.07 -36.91 -0.26 -0.35 16 9 C 0.58 11.86 7.76 -12.72 -0.10 11.76 16 10 O -0.53 -12.19 16.49 5.23 0.09 -12.11 16 11 N -0.68 -14.43 5.07 -56.15 -0.28 -14.72 16 12 C 0.23 5.47 2.22 -69.08 -0.15 5.32 16 13 H 0.05 1.37 4.73 -51.93 -0.25 1.12 16 14 C -0.15 -3.24 9.47 37.16 0.35 -2.89 16 15 C -0.53 -14.34 9.05 -34.44 -0.31 -14.65 16 16 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 17 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 18 N -0.89 -25.96 13.96 55.43 0.77 -25.19 16 19 Si 0.87 21.34 26.99 -169.99 -4.59 16.75 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.26 -6.19 6.82 56.52 0.39 -5.81 16 23 C -0.13 -2.02 10.52 -37.23 -0.39 -2.42 16 24 C -0.14 -1.94 6.15 -105.19 -0.65 -2.59 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.61 7.91 -51.93 -0.41 0.19 16 27 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 29 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 30 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 31 H 0.40 7.77 8.31 -40.82 -0.34 7.43 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.17 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 314.64 15.07 4.74 4.74 Total: -1.00 -31.10 314.64 -6.94 -38.04 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -4.37 Total: 4.53 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -3.33 Total: -9.09 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.49 Total: -39.91 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.11 Total: -15.06 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.59 Total: 16.75 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.10 -6.94 -38.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931157872.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.334 kcal (2) G-P(sol) polarization free energy of solvation -31.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds