Wall clock time and date at job start Mon Mar 30 2020 01:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99794 * 2 1 4 4 H 1.48501 * 109.46844 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46936 * 299.99277 * 3 2 1 6 6 H 1.48492 * 109.47279 * 59.99793 * 3 2 1 7 7 C 1.37874 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99641 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.45582 * 111.00250 * 55.56203 * 10 9 7 12 12 C 1.52908 * 109.23161 * 226.10049 * 11 10 9 13 13 C 1.53843 * 115.30343 * 318.38727 * 12 11 10 14 14 S 1.80065 * 112.96211 * 316.11573 * 13 12 11 15 15 O 1.42102 * 108.59222 * 331.21345 * 14 13 12 16 16 O 1.42096 * 108.59425 * 200.13588 * 14 13 12 17 17 C 1.83501 * 101.81077 * 85.67354 * 14 13 12 18 18 C 1.45729 * 109.65690 * 291.55085 * 17 14 13 19 19 H 1.09003 * 108.16788 * 303.07389 * 18 17 14 20 20 C 1.53001 * 108.30732 * 186.00880 * 18 17 14 21 21 C 1.52995 * 117.50224 * 128.65566 * 20 18 17 22 22 C 1.52991 * 59.99977 * 252.50483 * 21 20 18 23 23 H 0.97005 * 119.99912 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47519 * 60.00315 * 9 7 2 25 25 H 1.09004 * 109.47608 * 299.99918 * 9 7 2 26 26 H 1.09004 * 109.51230 * 106.17268 * 11 10 9 27 27 H 1.09000 * 109.55359 * 346.05202 * 11 10 9 28 28 H 1.08997 * 108.31411 * 79.89767 * 12 11 10 29 29 H 1.09004 * 108.31657 * 196.87563 * 12 11 10 30 30 H 1.08999 * 108.78808 * 77.01383 * 13 12 11 31 31 H 1.09003 * 108.78278 * 195.21987 * 13 12 11 32 32 H 1.09002 * 109.43665 * 171.49013 * 17 14 13 33 33 H 1.09002 * 109.40523 * 51.58756 * 17 14 13 34 34 H 1.09001 * 115.54473 * 274.35758 * 20 18 17 35 35 H 1.09007 * 117.50031 * 359.97438 * 21 20 18 36 36 H 1.09002 * 117.50609 * 145.01594 * 21 20 18 37 37 H 1.09002 * 117.50150 * 252.50985 * 22 21 20 38 38 H 1.09009 * 117.49914 * 107.48598 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 3.1280 -3.5123 1.1233 12 6 4.5530 -3.7617 0.6281 13 6 4.7057 -4.9093 -0.3850 14 16 3.7702 -6.3786 0.0717 15 8 3.6596 -6.4233 1.4877 16 8 4.3153 -7.4951 -0.6177 17 6 2.1174 -6.0056 -0.6329 18 6 1.5071 -4.9063 0.1038 19 1 1.4592 -5.1875 1.1559 20 6 0.0770 -4.7207 -0.4071 21 6 -1.0448 -4.6792 0.6324 22 6 -0.8820 -5.9048 -0.2688 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 2.8692 -4.2559 1.8772 27 1 3.0630 -2.5150 1.5584 28 1 4.9201 -2.8455 0.1658 29 1 5.1821 -3.9805 1.4910 30 1 4.3631 -4.5643 -1.3605 31 1 5.7605 -5.1738 -0.4593 32 1 1.4834 -6.8890 -0.5578 33 1 2.2254 -5.7245 -1.6805 34 1 -0.0290 -4.0875 -1.2880 35 1 -0.7641 -4.7845 1.6804 36 1 -1.8892 -4.0184 0.4357 37 1 -1.6191 -6.0504 -1.0584 38 1 -0.4940 -6.8161 0.1864 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933928613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:10 Heat of formation + Delta-G solvation = -49.794338 kcal Electronic energy + Delta-G solvation = -20617.472022 eV Core-core repulsion = 17587.761345 eV Total energy + Delta-G solvation = -3029.710678 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.68146 -38.03322 -37.20940 -37.01028 -34.96170 -33.76894 -32.48313 -28.84349 -27.52242 -24.82599 -24.17656 -23.21138 -21.68765 -20.61923 -19.63373 -18.58532 -17.83250 -17.69218 -16.80239 -16.67008 -16.46205 -15.85454 -15.56132 -15.32419 -14.78176 -14.54574 -14.22391 -13.79487 -13.74429 -13.17746 -13.12895 -13.00497 -12.78766 -12.72468 -12.63134 -12.54496 -12.42927 -12.27216 -12.03557 -11.47574 -11.30143 -11.20785 -11.11374 -11.09757 -10.68935 -10.55344 -9.12312 -8.16528 -6.23236 -0.83514 1.41522 1.44104 1.54752 1.81875 2.41717 2.75028 2.89067 2.97483 3.17276 3.25875 3.66729 3.82067 3.93168 4.02263 4.07330 4.14557 4.27550 4.36889 4.48535 4.52479 4.55591 4.77112 4.85748 4.98833 5.03444 5.09204 5.23676 5.25312 5.26388 5.28875 5.39003 5.49626 5.71998 6.08152 6.28620 6.59277 6.94321 7.44955 8.94460 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.020115 B = 0.007156 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.673043 B = 3911.863094 C = 4982.393985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.524 4.524 8 H 0.069 0.931 9 C 0.212 3.788 10 N -0.518 5.518 11 C 0.013 3.987 12 C -0.080 4.080 13 C -0.587 4.587 14 S 2.417 3.583 15 O -0.974 6.974 16 O -0.980 6.980 17 C -0.560 4.560 18 C 0.106 3.894 19 H 0.052 0.948 20 C -0.157 4.157 21 C -0.188 4.188 22 C -0.157 4.157 23 H 0.261 0.739 24 H 0.021 0.979 25 H -0.027 1.027 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.485 -10.891 -1.523 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.783 3.217 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.563 4.563 8 H 0.088 0.912 9 C 0.086 3.914 10 N -0.242 5.242 11 C -0.115 4.115 12 C -0.119 4.119 13 C -0.719 4.719 14 S 2.605 3.395 15 O -0.971 6.971 16 O -0.977 6.977 17 C -0.691 4.691 18 C -0.004 4.004 19 H 0.070 0.930 20 C -0.177 4.177 21 C -0.225 4.225 22 C -0.194 4.194 23 H 0.070 0.930 24 H 0.039 0.961 25 H -0.009 1.009 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.168 0.832 31 H 0.169 0.831 32 H 0.174 0.826 33 H 0.176 0.824 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.948 -11.539 -1.503 12.645 hybrid contribution -0.745 1.929 0.342 2.096 sum 4.203 -9.610 -1.161 10.553 Atomic orbital electron populations 1.70082 1.07497 1.27441 1.51966 1.25755 0.95565 1.02641 0.95243 0.85507 0.79307 0.79535 0.77308 1.18553 1.20925 1.21089 1.21641 0.93975 0.91203 1.49465 0.91241 1.19490 0.90213 0.86983 0.94714 1.62653 1.18274 1.01276 1.42023 1.22608 0.93142 1.03222 0.92574 1.21089 0.96274 0.97135 0.97427 1.29972 1.15044 1.15377 1.11506 1.07839 0.79447 0.77014 0.75198 1.93497 1.86343 1.87465 1.29775 1.93523 1.78159 1.49647 1.76395 1.28886 1.20303 1.06529 1.13374 1.19747 0.92558 0.90265 0.97785 0.93015 1.22431 0.90387 1.03147 1.01713 1.22971 1.00868 1.02316 0.96394 1.23140 1.01710 0.92239 1.02307 0.93007 0.96061 1.00869 0.92266 0.90515 0.90512 0.90184 0.83168 0.83124 0.82598 0.82443 0.88187 0.89570 0.89783 0.87217 0.87178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.20 13.29 21.45 0.28 -52.91 16 2 C 0.01 0.34 5.46 84.65 0.46 0.80 16 3 Si 0.96 42.30 29.54 68.60 2.03 44.33 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.52 -27.19 7.92 25.60 0.20 -26.98 16 8 H 0.07 3.47 7.03 -2.91 -0.02 3.45 16 9 C 0.21 10.07 3.64 85.56 0.31 10.38 16 10 N -0.52 -19.25 4.18 -891.86 -3.72 -22.97 16 11 C 0.01 0.47 4.64 86.52 0.40 0.88 16 12 C -0.08 -2.24 5.60 30.85 0.17 -2.07 16 13 C -0.59 -13.38 5.70 72.27 0.41 -12.97 16 14 S 2.42 61.66 5.17 -56.49 -0.29 61.37 16 15 O -0.97 -30.99 15.50 -127.38 -1.97 -32.97 16 16 O -0.98 -29.28 18.10 -127.38 -2.31 -31.59 16 17 C -0.56 -13.18 5.34 69.76 0.37 -12.80 16 18 C 0.11 3.30 1.76 42.65 0.08 3.38 16 19 H 0.05 1.69 6.07 -2.39 -0.01 1.67 16 20 C -0.16 -4.98 3.49 -10.80 -0.04 -5.02 16 21 C -0.19 -5.92 9.58 30.59 0.29 -5.63 16 22 C -0.16 -3.80 9.57 30.59 0.29 -3.51 16 23 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 24 H 0.02 1.10 6.08 -2.39 -0.01 1.08 16 25 H -0.03 -1.40 7.44 -2.39 -0.02 -1.41 16 26 H 0.06 2.05 5.42 -2.39 -0.01 2.04 16 27 H 0.08 3.10 6.15 -2.39 -0.01 3.09 16 28 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.15 3.12 8.08 -2.52 -0.02 3.10 16 31 H 0.15 2.61 8.14 -2.51 -0.02 2.59 16 32 H 0.16 2.89 6.78 -2.39 -0.02 2.87 16 33 H 0.16 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.10 3.60 6.47 -2.39 -0.02 3.59 16 35 H 0.09 2.73 8.03 -2.38 -0.02 2.71 16 36 H 0.08 2.79 8.14 -2.39 -0.02 2.78 16 37 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.11 2.22 7.45 -2.38 -0.02 2.20 16 Total: -1.00 -67.36 301.94 -1.98 -69.34 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 1.05 Total: 18.94 kcal Atomic # 6 Polarization: -56.51 SS G_CDS: 2.96 Total: -53.55 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -3.44 Total: -75.88 kcal Atomic # 8 Polarization: -60.27 SS G_CDS: -4.28 Total: -64.55 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: 61.66 SS G_CDS: -0.29 Total: 61.37 kcal Total: -67.36 -1.98 -69.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933928613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.544 kcal (2) G-P(sol) polarization free energy of solvation -67.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds