Wall clock time and date at job start Mon Mar 30 2020 01:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36660 * 120.14424 * 2 1 4 4 C 1.38792 * 120.44115 * 179.97438 * 3 2 1 5 5 C 1.37839 * 120.74800 * 0.02562 * 4 3 2 6 6 C 1.38985 * 119.85437 * 0.25384 * 5 4 3 7 7 O 1.34715 * 133.25131 * 180.47945 * 6 5 4 8 8 C 1.34948 * 110.86745 * 179.51878 * 7 6 5 9 9 C 1.46975 * 125.12799 * 179.73215 * 8 7 6 10 10 O 1.21656 * 120.00234 * 179.97438 * 9 8 7 11 11 N 1.34782 * 119.99746 * 359.97438 * 9 8 7 12 12 C 1.46504 * 119.99600 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46998 * 179.97438 * 12 11 9 14 14 C 1.50691 * 109.46875 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00847 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99683 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00320 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46947 * 59.99954 * 18 16 14 20 20 H 1.48502 * 109.46841 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.46867 * 299.99618 * 18 16 14 22 22 C 1.35802 * 109.74541 * 359.71333 * 8 7 6 23 23 C 1.39670 * 120.14625 * 179.97438 * 2 1 3 24 24 H 1.08993 * 109.46797 * 90.00068 * 1 2 3 25 25 H 1.09001 * 109.47025 * 210.00131 * 1 2 3 26 26 H 1.08993 * 109.47353 * 329.99964 * 1 2 3 27 27 H 1.07993 * 119.77846 * 0.02562 * 3 2 1 28 28 H 1.08009 * 119.62695 * 179.97438 * 4 3 2 29 29 H 1.08002 * 120.07108 * 179.97438 * 5 4 3 30 30 H 0.97001 * 120.00187 * 359.97438 * 11 9 8 31 31 H 1.09004 * 109.46818 * 299.99516 * 12 11 9 32 32 H 1.08994 * 109.47545 * 59.99270 * 12 11 9 33 33 H 1.08995 * 109.46499 * 300.00092 * 13 12 11 34 34 H 1.08997 * 109.46886 * 59.99752 * 13 12 11 35 35 H 0.96997 * 119.99909 * 179.97438 * 17 16 14 36 36 H 1.07995 * 126.96273 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1818 0.0000 4 6 3.5812 1.1890 0.0005 5 6 4.2921 0.0080 0.0005 6 6 3.6161 -1.2064 -0.0053 7 8 4.0245 -2.4901 0.0014 8 6 2.9686 -3.3304 0.0011 9 6 3.0553 -4.7976 0.0019 10 8 2.0395 -5.4671 0.0020 11 7 4.2604 -5.4014 0.0023 12 6 4.3468 -6.8639 0.0024 13 6 5.8170 -7.2878 0.0023 14 6 5.9059 -8.7921 0.0031 15 1 5.0042 -9.3865 0.0040 16 6 7.1386 -9.4098 0.0037 17 7 8.2368 -8.6861 0.0030 18 14 7.2489 -11.2746 0.0039 19 1 6.5798 -11.8101 -1.2088 20 1 8.6758 -11.6860 0.0039 21 1 6.5789 -11.8099 1.2162 22 6 1.8137 -2.6160 0.0006 23 6 2.2085 -1.2078 0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.6521 2.1163 0.0004 28 1 4.1103 2.1306 0.0001 29 1 5.3719 0.0264 0.0005 30 1 5.0703 -4.8676 0.0018 31 1 3.8551 -7.2568 0.8924 32 1 3.8556 -7.2570 -0.8875 33 1 6.3082 -6.8948 -0.8877 34 1 6.3085 -6.8946 0.8922 35 1 9.1040 -9.1207 0.0038 36 1 0.8074 -3.0082 0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935340368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:16 Heat of formation + Delta-G solvation = -24.824018 kcal Electronic energy + Delta-G solvation = -19447.374360 eV Core-core repulsion = 16283.302526 eV Total energy + Delta-G solvation = -3164.071835 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.61317 -39.26339 -38.26379 -35.07528 -33.54876 -32.91628 -31.74450 -30.45715 -29.31245 -27.13068 -25.27515 -23.45540 -22.85294 -21.12989 -20.83078 -20.45036 -18.16125 -17.33130 -16.47685 -16.43967 -16.18446 -15.29634 -14.96075 -14.83541 -14.49741 -14.04313 -13.86135 -13.67850 -13.26901 -13.11913 -13.11001 -12.58449 -12.30766 -11.96802 -11.91321 -11.26468 -11.20573 -11.05088 -10.69621 -10.39860 -10.26180 -10.22240 -9.61311 -9.31318 -8.87348 -8.68830 -8.43322 -8.26409 -6.10782 -4.14302 0.43858 1.11953 1.76226 2.40416 3.29466 3.30579 3.34234 3.35847 3.43107 3.45080 4.28837 4.38939 4.49521 4.57158 4.85332 4.89000 5.05229 5.10498 5.25950 5.26134 5.33280 5.43002 5.50084 5.74081 5.92448 6.03064 6.14583 6.20005 6.25744 6.26174 6.38666 6.62313 6.71240 6.89978 7.47526 7.57452 7.80724 7.86785 8.21091 8.36100 8.91178 9.50630 11.00757 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.040403 B = 0.003061 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.843523 B = 9146.122412 C = 9813.217813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.028 4.028 3 C -0.145 4.145 4 C -0.083 4.083 5 C -0.115 4.115 6 C 0.072 3.928 7 O -0.182 6.182 8 C -0.012 4.012 9 C 0.587 3.413 10 O -0.525 6.525 11 N -0.704 5.704 12 C 0.119 3.881 13 C 0.012 3.988 14 C -0.524 4.524 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.123 4.123 23 C -0.142 4.142 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.129 0.871 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.405 0.595 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.263 0.737 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.018 21.377 -0.033 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.029 4.029 3 C -0.163 4.163 4 C -0.101 4.101 5 C -0.134 4.134 6 C 0.023 3.977 7 O -0.083 6.083 8 C -0.063 4.063 9 C 0.371 3.629 10 O -0.403 6.403 11 N -0.352 5.352 12 C -0.003 4.003 13 C -0.025 4.025 14 C -0.562 4.562 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.144 4.144 23 C -0.143 4.143 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.147 0.853 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.239 0.761 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.231 20.729 -0.030 23.576 hybrid contribution 0.579 -0.697 -0.008 0.906 sum -10.652 20.032 -0.038 22.688 Atomic orbital electron populations 1.20825 0.90611 1.03198 1.02779 1.19157 0.96155 0.90699 0.96856 1.20659 0.94190 0.97416 1.03998 1.20951 0.94007 0.97045 0.98111 1.19999 1.00461 0.87575 1.05350 1.19762 0.92734 0.83957 1.01246 1.84064 1.34254 1.14073 1.75911 1.22310 0.85509 0.91095 1.07338 1.16749 0.84960 0.82915 0.78267 1.90861 1.35214 1.62704 1.51558 1.46338 1.07192 1.10207 1.71492 1.21895 1.01847 0.75225 1.01314 1.19336 0.88046 0.97069 0.98092 1.20990 0.92607 0.90906 1.51743 0.92194 1.25001 0.95683 0.98658 0.94908 1.69948 0.97619 1.35548 1.50092 0.86553 0.76964 0.85115 0.78793 1.20083 1.21226 1.20079 1.22646 0.99125 0.90016 1.02626 1.19775 0.93046 0.93531 1.07911 0.90642 0.91096 0.91123 0.85283 0.84628 0.84691 0.76052 0.91927 0.91934 0.95763 0.95766 0.92727 0.81400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 9.96 36.01 0.36 -0.51 16 2 C -0.03 -0.29 5.88 -104.66 -0.62 -0.90 16 3 C -0.14 -1.21 9.63 -39.95 -0.38 -1.59 16 4 C -0.08 -0.68 10.01 -39.52 -0.40 -1.08 16 5 C -0.12 -1.19 10.07 -39.45 -0.40 -1.59 16 6 C 0.07 0.95 7.41 -38.35 -0.28 0.66 16 7 O -0.18 -2.72 10.28 2.77 0.03 -2.69 16 8 C -0.01 -0.19 7.07 -36.92 -0.26 -0.46 16 9 C 0.59 10.60 7.79 -12.72 -0.10 10.50 16 10 O -0.52 -10.75 16.83 5.23 0.09 -10.66 16 11 N -0.70 -12.90 5.55 -61.52 -0.34 -13.24 16 12 C 0.12 2.52 5.61 -4.04 -0.02 2.49 16 13 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 14 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 18 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.12 -1.70 10.52 -37.24 -0.39 -2.09 16 23 C -0.14 -1.80 6.15 -105.19 -0.65 -2.44 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.54 7.91 -51.93 -0.41 0.12 16 26 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 27 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 28 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 29 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.40 6.78 8.19 -40.82 -0.33 6.45 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 319.71 15.07 4.82 4.82 Total: -1.00 -31.47 319.71 -7.89 -39.36 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.51 Total: 1.56 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -3.69 Total: -10.06 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.39 Total: -38.64 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.12 Total: -13.35 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.47 -7.89 -39.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935340368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.539 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds