Wall clock time and date at job start Mon Mar 30 2020 01:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36660 * 120.14424 * 2 1 4 4 C 1.38792 * 120.44115 * 179.97438 * 3 2 1 5 5 C 1.37839 * 120.74800 * 0.02562 * 4 3 2 6 6 C 1.38985 * 119.85437 * 0.25384 * 5 4 3 7 7 O 1.34715 * 133.25131 * 180.47945 * 6 5 4 8 8 C 1.34948 * 110.86745 * 179.51878 * 7 6 5 9 9 C 1.46975 * 125.12799 * 179.73215 * 8 7 6 10 10 O 1.21656 * 120.00234 * 179.97438 * 9 8 7 11 11 N 1.34782 * 119.99746 * 359.97438 * 9 8 7 12 12 C 1.46504 * 119.99600 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46998 * 179.97438 * 12 11 9 14 14 C 1.50691 * 109.46875 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00847 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99683 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00320 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46947 * 59.99954 * 18 16 14 20 20 H 1.48502 * 109.46841 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.46867 * 299.99618 * 18 16 14 22 22 C 1.35802 * 109.74541 * 359.71333 * 8 7 6 23 23 C 1.39670 * 120.14625 * 179.97438 * 2 1 3 24 24 H 1.08993 * 109.46797 * 90.00068 * 1 2 3 25 25 H 1.09001 * 109.47025 * 210.00131 * 1 2 3 26 26 H 1.08993 * 109.47353 * 329.99964 * 1 2 3 27 27 H 1.07993 * 119.77846 * 0.02562 * 3 2 1 28 28 H 1.08009 * 119.62695 * 179.97438 * 4 3 2 29 29 H 1.08002 * 120.07108 * 179.97438 * 5 4 3 30 30 H 0.97001 * 120.00187 * 359.97438 * 11 9 8 31 31 H 1.09004 * 109.46818 * 299.99516 * 12 11 9 32 32 H 1.08994 * 109.47545 * 59.99270 * 12 11 9 33 33 H 1.08995 * 109.46499 * 300.00092 * 13 12 11 34 34 H 1.08997 * 109.46886 * 59.99752 * 13 12 11 35 35 H 0.96997 * 119.99909 * 179.97438 * 17 16 14 36 36 H 1.07995 * 126.96273 * 180.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1933 1.1818 0.0000 4 6 3.5812 1.1890 0.0005 5 6 4.2921 0.0080 0.0005 6 6 3.6161 -1.2064 -0.0053 7 8 4.0245 -2.4901 0.0014 8 6 2.9686 -3.3304 0.0011 9 6 3.0553 -4.7976 0.0019 10 8 2.0395 -5.4671 0.0020 11 7 4.2604 -5.4014 0.0023 12 6 4.3468 -6.8639 0.0024 13 6 5.8170 -7.2878 0.0023 14 6 5.9059 -8.7921 0.0031 15 1 5.0042 -9.3865 0.0040 16 6 7.1386 -9.4098 0.0037 17 7 8.2368 -8.6861 0.0030 18 14 7.2489 -11.2746 0.0039 19 1 6.5798 -11.8101 -1.2088 20 1 8.6758 -11.6860 0.0039 21 1 6.5789 -11.8099 1.2162 22 6 1.8137 -2.6160 0.0006 23 6 2.2085 -1.2078 0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.6521 2.1163 0.0004 28 1 4.1103 2.1306 0.0001 29 1 5.3719 0.0264 0.0005 30 1 5.0703 -4.8676 0.0018 31 1 3.8551 -7.2568 0.8924 32 1 3.8556 -7.2570 -0.8875 33 1 6.3082 -6.8948 -0.8877 34 1 6.3085 -6.8946 0.8922 35 1 9.1040 -9.1207 0.0038 36 1 0.8074 -3.0082 0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935340368.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:16 Heat of formation + Delta-G solvation = -44.117740 kcal Electronic energy + Delta-G solvation = -19448.210999 eV Core-core repulsion = 16283.302526 eV Total energy + Delta-G solvation = -3164.908473 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.60760 -40.69538 -39.10680 -36.79250 -34.90910 -34.37990 -32.63083 -32.01499 -30.61842 -27.91669 -26.98001 -24.82185 -23.73065 -22.88070 -21.87904 -21.64351 -19.46446 -18.52121 -18.19731 -17.59183 -17.08491 -16.81179 -16.49709 -16.37339 -15.87630 -15.05708 -14.89852 -14.71635 -14.46309 -14.36888 -14.22233 -14.05376 -13.28660 -13.21698 -12.95640 -12.67210 -12.57629 -12.55462 -12.29906 -11.94660 -11.85560 -11.58058 -11.30316 -11.24652 -10.62848 -10.25763 -9.67361 -9.18042 -8.25368 -6.36722 -0.53336 0.31592 0.74907 1.34332 1.41853 1.44361 1.52333 1.96036 2.06468 2.41880 2.65557 3.09425 3.32117 3.53182 3.83926 3.94307 4.12125 4.16048 4.36832 4.38066 4.42801 4.53890 4.71556 4.75274 4.78741 4.81579 4.97296 5.06308 5.23481 5.24642 5.36948 5.40173 5.51581 5.52378 5.58681 5.74801 5.99772 6.11296 6.36220 6.75643 6.88158 7.32826 8.86580 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.040403 B = 0.003061 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.843523 B = 9146.122412 C = 9813.217813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.034 4.034 3 C -0.141 4.141 4 C -0.065 4.065 5 C -0.134 4.134 6 C 0.048 3.952 7 O -0.197 6.197 8 C -0.047 4.047 9 C 0.593 3.407 10 O -0.555 6.555 11 N -0.704 5.704 12 C 0.138 3.862 13 C 0.021 3.979 14 C -0.548 4.548 15 H 0.064 0.936 16 C 0.006 3.994 17 N -0.928 5.928 18 Si 0.968 3.032 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.267 1.267 22 C -0.104 4.104 23 C -0.166 4.166 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.165 0.835 28 H 0.174 0.826 29 H 0.148 0.852 30 H 0.412 0.588 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.008 0.992 34 H 0.008 0.992 35 H 0.266 0.734 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.033 23.511 -0.033 26.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.034 4.034 3 C -0.158 4.158 4 C -0.082 4.082 5 C -0.152 4.152 6 C 0.000 4.000 7 O -0.100 6.100 8 C -0.096 4.096 9 C 0.379 3.621 10 O -0.436 6.436 11 N -0.353 5.353 12 C 0.015 3.985 13 C -0.016 4.016 14 C -0.586 4.586 15 H 0.082 0.918 16 C -0.193 4.193 17 N -0.567 5.567 18 Si 0.792 3.208 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.192 1.192 22 C -0.124 4.124 23 C -0.167 4.167 24 H 0.102 0.898 25 H 0.083 0.917 26 H 0.112 0.888 27 H 0.183 0.817 28 H 0.192 0.808 29 H 0.166 0.834 30 H 0.247 0.753 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -12.252 22.888 -0.030 25.961 hybrid contribution 0.857 -1.099 -0.009 1.394 sum -11.395 21.789 -0.039 24.589 Atomic orbital electron populations 1.20903 0.88826 1.04120 1.03599 1.19575 0.97637 0.90212 0.95988 1.21158 0.94480 0.98152 1.02041 1.21491 0.94298 0.97607 0.94842 1.20398 1.01522 0.87208 1.06090 1.20345 0.93709 0.83872 1.02082 1.83994 1.34196 1.14993 1.76787 1.21734 0.86549 0.89923 1.11416 1.16925 0.84057 0.84074 0.77012 1.90824 1.35879 1.63936 1.52932 1.46144 1.07997 1.09042 1.72074 1.21439 0.99140 0.77022 1.00888 1.19146 0.89994 0.96084 0.96381 1.21431 0.93040 0.92358 1.51795 0.91828 1.25919 0.95252 1.03814 0.94310 1.70066 0.98188 1.37639 1.50854 0.85455 0.77197 0.78922 0.79222 1.19208 1.20665 1.19196 1.22920 0.98941 0.90887 0.99678 1.19977 0.93162 0.93777 1.09771 0.89756 0.91692 0.88765 0.81702 0.80826 0.83414 0.75268 0.92342 0.92348 0.97403 0.97410 0.92500 0.80366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.96 71.24 0.71 -0.71 16 2 C -0.03 -0.59 5.88 -19.89 -0.12 -0.71 16 3 C -0.14 -1.78 9.63 22.03 0.21 -1.57 16 4 C -0.06 -0.82 10.01 22.31 0.22 -0.60 16 5 C -0.13 -2.54 10.07 22.35 0.23 -2.31 16 6 C 0.05 1.26 7.41 23.07 0.17 1.43 16 7 O -0.20 -6.14 10.28 -13.00 -0.13 -6.27 16 8 C -0.05 -1.52 7.07 24.00 0.17 -1.35 16 9 C 0.59 22.33 7.79 86.53 0.67 23.00 16 10 O -0.55 -23.51 16.83 -4.21 -0.07 -23.58 16 11 N -0.70 -27.02 5.55 -466.78 -2.59 -29.61 16 12 C 0.14 6.06 5.61 86.38 0.48 6.54 16 13 C 0.02 1.10 5.09 29.85 0.15 1.26 16 14 C -0.55 -30.82 9.11 25.60 0.23 -30.59 16 15 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 16 C 0.01 0.33 5.46 84.65 0.46 0.79 16 17 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 18 Si 0.97 43.81 29.54 68.60 2.03 45.83 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 C -0.10 -2.88 10.52 23.79 0.25 -2.63 16 23 C -0.17 -4.08 6.15 -20.23 -0.12 -4.21 16 24 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.86 7.91 -2.39 -0.02 0.84 16 26 H 0.09 0.69 8.08 -2.39 -0.02 0.67 16 27 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 28 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 29 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 30 H 0.41 14.60 8.19 -92.71 -0.76 13.84 16 31 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.01 0.41 8.14 -2.39 -0.02 0.40 16 34 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.18 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -69.27 319.71 3.58 -65.69 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.34 Total: 14.46 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 3.73 Total: -11.65 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -2.31 Total: -84.50 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.20 Total: -29.85 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -69.27 3.58 -65.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935340368.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.577 kcal (2) G-P(sol) polarization free energy of solvation -69.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds