Wall clock time and date at job start Mon Mar 30 2020 01:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 120.00147 * 2 1 4 4 H 1.48500 * 109.47495 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47119 * 300.00288 * 3 2 1 6 6 H 1.48501 * 109.46899 * 59.99815 * 3 2 1 7 7 C 1.38950 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00189 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00065 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00187 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99721 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00023 * 179.97438 * 10 9 7 13 13 O 1.45201 * 109.47187 * 179.97438 * 12 10 9 14 14 C 1.34222 * 116.99867 * 180.02562 * 13 12 10 15 15 O 1.20830 * 120.00323 * 359.72425 * 14 13 12 16 16 C 1.50706 * 120.00024 * 180.02562 * 14 13 12 17 17 H 1.09001 * 109.46564 * 299.72723 * 16 14 13 18 18 C 1.52997 * 109.46859 * 59.72071 * 16 14 13 19 19 C 1.53006 * 109.46797 * 180.02562 * 18 16 14 20 20 C 1.52998 * 109.47298 * 300.00115 * 19 18 16 21 21 C 1.52996 * 109.46805 * 59.99968 * 20 19 18 22 22 H 1.09000 * 109.47163 * 60.00335 * 21 20 19 23 23 F 1.39905 * 109.47210 * 179.97438 * 21 20 19 24 24 C 1.52996 * 109.47408 * 299.99744 * 21 20 19 25 25 H 0.97000 * 119.99579 * 0.02562 * 1 2 3 26 26 H 0.96997 * 119.99500 * 359.97438 * 9 7 2 27 27 H 1.09009 * 109.47109 * 60.00094 * 12 10 9 28 28 H 1.09001 * 109.47115 * 300.00027 * 12 10 9 29 29 H 1.08995 * 109.47505 * 300.00432 * 18 16 14 30 30 H 1.09001 * 109.47000 * 60.00919 * 18 16 14 31 31 H 1.09006 * 109.46802 * 179.97438 * 19 18 16 32 32 H 1.09001 * 109.46675 * 60.00622 * 19 18 16 33 33 H 1.09000 * 109.46986 * 300.00195 * 20 19 18 34 34 H 1.09002 * 109.47205 * 180.02562 * 20 19 18 35 35 H 1.09000 * 109.47441 * 300.00421 * 24 21 20 36 36 H 1.09002 * 109.47087 * 179.97438 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0030 12 6 1.2438 -4.8630 0.0022 13 8 2.1874 -5.9666 0.0027 14 6 1.6743 -7.2069 0.0027 15 8 0.4765 -7.3653 0.0073 16 6 2.5923 -8.4021 0.0038 17 1 3.2184 -8.3800 -0.8882 18 6 3.4788 -8.3631 1.2501 19 6 4.4113 -9.5762 1.2509 20 6 3.5785 -10.8596 1.2573 21 6 2.6920 -10.8985 0.0110 22 1 3.3180 -10.8762 -0.8810 23 9 1.9308 -12.0724 0.0165 24 6 1.7595 -9.6855 0.0102 25 1 -0.4849 0.8401 -0.0004 26 1 0.3535 -2.3906 0.0005 27 1 0.6175 -4.9213 -0.8881 28 1 0.6168 -4.9201 0.8919 29 1 4.0724 -7.4489 1.2453 30 1 2.8527 -8.3851 2.1421 31 1 5.0432 -9.5481 2.1386 32 1 5.0373 -9.5537 0.3589 33 1 2.9524 -10.8820 2.1493 34 1 4.2427 -11.7238 1.2584 35 1 1.1335 -9.7079 0.9022 36 1 1.1283 -9.7131 -0.8780 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118100321.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:57 Heat of formation + Delta-G solvation = -217.277686 kcal Electronic energy + Delta-G solvation = -20748.124797 eV Core-core repulsion = 17144.938321 eV Total energy + Delta-G solvation = -3603.186477 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.62335 -41.88646 -40.15507 -38.77305 -37.46414 -36.04391 -33.43423 -32.42840 -31.27392 -29.95778 -26.74559 -25.12747 -23.56075 -22.04669 -21.44630 -20.99365 -20.08741 -18.92345 -18.02657 -17.74818 -17.45206 -16.81919 -16.66645 -16.24643 -15.88880 -15.85313 -15.63358 -15.43427 -14.80420 -14.60567 -13.98751 -13.81805 -13.66211 -13.56336 -13.44650 -12.95037 -12.79639 -12.47495 -12.36630 -12.12972 -12.10828 -11.88974 -11.79156 -11.67666 -11.59274 -11.36369 -11.10834 -10.52337 -10.13041 -8.53581 -6.04332 1.04442 1.32890 1.34127 1.44662 1.58768 1.85392 2.28866 2.97767 3.11986 3.37818 3.45604 3.51986 3.80998 3.83820 3.97990 4.00720 4.12839 4.19567 4.21370 4.25364 4.28529 4.50655 4.56851 4.89387 4.96732 5.05613 5.13464 5.17700 5.22117 5.32624 5.36586 5.41242 5.87887 6.43753 6.60015 7.01739 7.38449 7.91547 8.63711 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.049652 B = 0.003114 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.788080 B = 8989.203762 C = 9417.630781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.999 3.001 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.085 0.915 9 N -0.559 5.559 10 C 0.437 3.563 11 O -0.616 6.616 12 C 0.070 3.930 13 O -0.339 6.339 14 C 0.461 3.539 15 O -0.534 6.534 16 C -0.067 4.067 17 H 0.137 0.863 18 C -0.117 4.117 19 C -0.106 4.106 20 C -0.145 4.145 21 C 0.094 3.906 22 H 0.110 0.890 23 F -0.227 7.227 24 C -0.127 4.127 25 H 0.281 0.719 26 H 0.399 0.601 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.021 -19.212 1.092 19.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.103 0.897 9 N -0.196 5.196 10 C 0.224 3.776 11 O -0.502 6.502 12 C -0.008 4.008 13 O -0.254 6.254 14 C 0.305 3.695 15 O -0.424 6.424 16 C -0.086 4.086 17 H 0.154 0.846 18 C -0.155 4.155 19 C -0.144 4.144 20 C -0.182 4.182 21 C 0.058 3.942 22 H 0.128 0.872 23 F -0.208 7.208 24 C -0.165 4.165 25 H 0.090 0.910 26 H 0.234 0.766 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.293 -19.100 1.100 19.850 hybrid contribution -0.874 1.024 -0.013 1.346 sum 4.419 -18.076 1.087 18.640 Atomic orbital electron populations 1.69681 1.06998 1.29683 1.49247 1.26141 0.96577 1.02636 0.95638 0.84791 0.78122 0.76522 0.78424 1.19437 1.19470 1.19483 1.19772 0.92966 0.83341 1.50576 0.89674 1.41761 1.09554 1.04243 1.64037 1.20075 0.88087 0.85325 0.84119 1.90522 1.15339 1.87677 1.56706 1.22512 0.90299 0.82786 1.05164 1.86554 1.40574 1.14967 1.83290 1.24501 0.88971 0.84740 0.71239 1.90649 1.18107 1.86869 1.46767 1.21074 0.95792 0.87417 1.04271 0.84581 1.21636 0.97859 1.00956 0.95038 1.21448 0.97057 0.91103 1.04752 1.22175 0.98976 1.00035 0.97039 1.21686 0.91117 0.79404 1.02032 0.87242 1.92794 1.78866 1.51036 1.98079 1.21972 0.98012 0.92009 1.04509 0.90966 0.76624 0.87753 0.87838 0.90535 0.91587 0.89207 0.89472 0.91119 0.88902 0.91007 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.51 13.05 21.66 0.28 -48.23 16 2 C -0.01 -0.48 5.50 84.93 0.47 -0.02 16 3 Si 1.00 41.72 29.55 68.60 2.03 43.75 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 6 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.34 -18.84 9.68 84.04 0.81 -18.03 16 8 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 9 N -0.56 -28.54 5.29 -306.98 -1.62 -30.16 16 10 C 0.44 21.19 7.86 87.66 0.69 21.88 16 11 O -0.62 -34.54 16.08 15.74 0.25 -34.29 16 12 C 0.07 2.61 5.94 71.23 0.42 3.03 16 13 O -0.34 -12.11 9.65 -44.98 -0.43 -12.55 16 14 C 0.46 13.65 7.26 71.24 0.52 14.17 16 15 O -0.53 -18.06 15.73 21.95 0.35 -17.71 16 16 C -0.07 -1.32 2.63 -11.54 -0.03 -1.35 16 17 H 0.14 2.12 8.14 -2.39 -0.02 2.10 16 18 C -0.12 -2.06 5.13 30.60 0.16 -1.90 16 19 C -0.11 -1.19 5.92 30.60 0.18 -1.01 16 20 C -0.14 -1.68 5.66 30.59 0.17 -1.51 16 21 C 0.09 1.35 3.87 30.59 0.12 1.47 16 22 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 23 F -0.23 -4.51 17.08 44.97 0.77 -3.75 16 24 C -0.13 -2.37 4.23 30.59 0.13 -2.24 16 25 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 26 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 27 H 0.10 3.53 8.14 -2.38 -0.02 3.51 16 28 H 0.10 3.52 8.13 -2.39 -0.02 3.50 16 29 H 0.08 1.58 8.11 -2.39 -0.02 1.56 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 36 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16 Total: -1.00 -68.93 312.38 5.62 -63.31 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.36 Total: 25.14 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 3.64 Total: 14.50 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -1.34 Total: -78.39 kcal Atomic # 8 Polarization: -64.72 SS G_CDS: 0.16 Total: -64.55 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.77 Total: -3.75 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -68.93 5.62 -63.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118100321.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.970 kcal (2) G-P(sol) polarization free energy of solvation -68.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds