Wall clock time and date at job start Mon Mar 30 2020 01:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99573 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99431 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99772 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 O 1.45195 * 109.47182 * 179.72352 * 12 10 9 14 14 C 1.34227 * 117.00234 * 179.97438 * 13 12 10 15 15 O 1.20829 * 119.99630 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99875 * 179.97438 * 14 13 12 17 17 H 1.08993 * 109.47533 * 299.99528 * 16 14 13 18 18 C 1.53007 * 109.46885 * 179.97438 * 16 14 13 19 19 C 1.53000 * 109.47177 * 179.97438 * 18 16 14 20 20 C 1.53002 * 109.46997 * 60.00125 * 19 18 16 21 21 C 1.53002 * 109.47218 * 300.00439 * 20 19 18 22 22 H 1.08996 * 109.47346 * 180.02562 * 21 20 19 23 23 F 1.39908 * 109.46561 * 299.99657 * 21 20 19 24 24 C 1.52996 * 109.47000 * 60.00329 * 16 14 13 25 25 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 28 28 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 29 29 H 1.08998 * 109.46953 * 300.00547 * 18 16 14 30 30 H 1.09004 * 109.47027 * 59.99985 * 18 16 14 31 31 H 1.09001 * 109.46984 * 179.97438 * 19 18 16 32 32 H 1.08999 * 109.47210 * 300.00452 * 19 18 16 33 33 H 1.09007 * 109.47199 * 59.99566 * 20 19 18 34 34 H 1.08994 * 109.47124 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.47250 * 299.99478 * 24 16 14 36 36 H 1.09001 * 109.47909 * 59.99818 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 8 2.1874 -5.9665 -0.0088 14 6 1.6744 -7.2069 -0.0141 15 8 0.4765 -7.3652 -0.0148 16 6 2.5925 -8.4020 -0.0192 17 1 3.2212 -8.3734 -0.9090 18 6 1.7592 -9.6852 -0.0240 19 6 2.6912 -10.8985 -0.0298 20 6 3.5747 -10.8689 1.2190 21 6 4.4079 -9.5856 1.2239 22 1 5.0377 -9.5647 2.1133 23 9 5.2143 -9.5489 0.0812 24 6 3.4750 -8.3723 1.2302 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3906 0.0005 27 1 0.6165 -4.9246 0.8846 28 1 0.6178 -4.9168 -0.8953 29 1 1.1306 -9.7135 0.8660 30 1 1.1300 -9.7065 -0.9139 31 1 2.0975 -11.8127 -0.0328 32 1 3.3195 -10.8699 -0.9200 33 1 2.9465 -10.8974 2.1094 34 1 4.2384 -11.7335 1.2151 35 1 4.0687 -7.4582 1.2342 36 1 2.8462 -8.4010 2.1202 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118100323.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:01 Heat of formation + Delta-G solvation = -196.053373 kcal Electronic energy + Delta-G solvation = -20940.205400 eV Core-core repulsion = 17337.939279 eV Total energy + Delta-G solvation = -3602.266122 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.81860 -40.53737 -38.34104 -37.51988 -36.01875 -33.99921 -31.73488 -31.35499 -30.63595 -28.36782 -24.94157 -23.95954 -22.96645 -20.92807 -19.80057 -19.57088 -18.06765 -17.68644 -16.79521 -16.52633 -15.87777 -15.66116 -15.49574 -15.14218 -14.90013 -14.46429 -13.97689 -13.87441 -13.65315 -13.16269 -12.74215 -12.62256 -12.38405 -12.06534 -11.99535 -11.80208 -11.61997 -11.41482 -11.13280 -11.04356 -10.79253 -10.44153 -10.39545 -10.37300 -10.31067 -10.13784 -9.60447 -8.51718 -8.08199 -6.49951 -3.92027 2.29761 2.71267 3.13408 3.23510 3.29772 3.73994 4.08772 4.18481 4.22951 4.38398 4.49349 4.72880 4.75435 4.83662 4.97014 5.05634 5.12555 5.15105 5.18960 5.32510 5.52858 5.61494 5.63160 5.69339 5.71719 5.82097 5.85985 5.98231 6.06494 6.10829 6.64866 7.47853 7.85094 7.96906 8.48753 9.07222 9.39497 9.89525 10.67333 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.040236 B = 0.003367 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.722034 B = 8315.020097 C = 8839.476539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.553 5.553 10 C 0.438 3.562 11 O -0.575 6.575 12 C 0.059 3.941 13 O -0.324 6.324 14 C 0.462 3.538 15 O -0.513 6.513 16 C -0.078 4.078 17 H 0.114 0.886 18 C -0.105 4.105 19 C -0.120 4.120 20 C -0.149 4.149 21 C 0.095 3.905 22 H 0.089 0.911 23 F -0.210 7.210 24 C -0.141 4.141 25 H 0.274 0.726 26 H 0.395 0.605 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.887 -19.803 2.493 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.190 5.190 10 C 0.223 3.777 11 O -0.459 6.459 12 C -0.018 4.018 13 O -0.238 6.238 14 C 0.305 3.695 15 O -0.402 6.402 16 C -0.097 4.097 17 H 0.132 0.868 18 C -0.142 4.142 19 C -0.157 4.157 20 C -0.186 4.186 21 C 0.059 3.941 22 H 0.106 0.894 23 F -0.191 7.191 24 C -0.179 4.179 25 H 0.084 0.916 26 H 0.228 0.772 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.226 -19.637 2.473 20.053 hybrid contribution -0.464 0.972 -0.082 1.080 sum 2.763 -18.665 2.391 19.019 Atomic orbital electron populations 1.69614 1.06005 1.28481 1.49720 1.25310 0.95685 0.99865 0.96894 0.85797 0.79232 0.80408 0.78511 1.20253 1.20815 1.19261 1.19731 0.93491 0.81773 1.48169 0.87611 1.41709 1.09359 1.04098 1.63876 1.19331 0.88345 0.84084 0.85941 1.90564 1.13399 1.86789 1.55181 1.22749 0.90909 0.84718 1.03426 1.86558 1.40308 1.14215 1.82720 1.23682 0.88545 0.84908 0.72390 1.90644 1.16869 1.86867 1.45841 1.21008 0.96371 0.90355 1.01965 0.86764 1.21477 0.97257 0.91499 1.04011 1.21520 0.97871 0.98054 0.98278 1.22189 0.99194 0.97206 1.00039 1.21540 0.90795 0.95827 0.85943 0.89354 1.92817 1.75166 1.97528 1.53597 1.22172 0.98369 0.99729 0.97630 0.91631 0.77173 0.89621 0.89591 0.90744 0.90572 0.90878 0.91010 0.89931 0.90612 0.88593 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.15 13.05 55.50 0.72 -23.43 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.76 29.55 -169.99 -5.02 15.73 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 8 H 0.11 3.06 7.16 -52.49 -0.38 2.68 16 9 N -0.55 -14.08 5.29 -10.96 -0.06 -14.13 16 10 C 0.44 10.66 7.86 -10.98 -0.09 10.57 16 11 O -0.58 -16.11 16.08 -14.11 -0.23 -16.33 16 12 C 0.06 1.15 5.94 36.01 0.21 1.36 16 13 O -0.32 -6.08 9.66 -45.90 -0.44 -6.52 16 14 C 0.46 7.28 7.26 36.01 0.26 7.54 16 15 O -0.51 -8.90 15.73 -18.75 -0.29 -9.20 16 16 C -0.08 -0.92 2.51 -91.77 -0.23 -1.15 16 17 H 0.11 1.34 7.80 -51.93 -0.41 0.94 16 18 C -0.10 -1.02 4.49 -26.73 -0.12 -1.14 16 19 C -0.12 -0.92 5.80 -26.73 -0.16 -1.07 16 20 C -0.15 -1.03 5.72 -26.73 -0.15 -1.18 16 21 C 0.10 0.82 4.13 -26.70 -0.11 0.71 16 22 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 23 F -0.21 -2.39 16.04 2.25 0.04 -2.35 16 24 C -0.14 -1.47 4.93 -26.71 -0.13 -1.60 16 25 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 26 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 27 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 28 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 29 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.59 7.80 -51.93 -0.41 0.18 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 1.15 8.11 -51.93 -0.42 0.73 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 310.80 15.07 4.68 4.68 Total: -1.00 -32.33 310.80 -6.22 -38.55 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.86 Total: 6.92 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -0.75 Total: 6.08 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.67 Total: -37.56 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.97 Total: -32.05 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.33 -6.22 -38.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118100323.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.504 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds