Wall clock time and date at job start Mon Mar 30 2020 01:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99573 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99431 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99772 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 O 1.45195 * 109.47182 * 179.72352 * 12 10 9 14 14 C 1.34227 * 117.00234 * 179.97438 * 13 12 10 15 15 O 1.20829 * 119.99630 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99875 * 179.97438 * 14 13 12 17 17 H 1.08993 * 109.47533 * 299.99528 * 16 14 13 18 18 C 1.53007 * 109.46885 * 179.97438 * 16 14 13 19 19 C 1.53000 * 109.47177 * 179.97438 * 18 16 14 20 20 C 1.53002 * 109.46997 * 60.00125 * 19 18 16 21 21 C 1.53002 * 109.47218 * 300.00439 * 20 19 18 22 22 H 1.08996 * 109.47346 * 180.02562 * 21 20 19 23 23 F 1.39908 * 109.46561 * 299.99657 * 21 20 19 24 24 C 1.52996 * 109.47000 * 60.00329 * 16 14 13 25 25 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 26 26 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 28 28 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 29 29 H 1.08998 * 109.46953 * 300.00547 * 18 16 14 30 30 H 1.09004 * 109.47027 * 59.99985 * 18 16 14 31 31 H 1.09001 * 109.46984 * 179.97438 * 19 18 16 32 32 H 1.08999 * 109.47210 * 300.00452 * 19 18 16 33 33 H 1.09007 * 109.47199 * 59.99566 * 20 19 18 34 34 H 1.08994 * 109.47124 * 179.97438 * 20 19 18 35 35 H 1.09001 * 109.47250 * 299.99478 * 24 16 14 36 36 H 1.09001 * 109.47909 * 59.99818 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 8 2.1874 -5.9665 -0.0088 14 6 1.6744 -7.2069 -0.0141 15 8 0.4765 -7.3652 -0.0148 16 6 2.5925 -8.4020 -0.0192 17 1 3.2212 -8.3734 -0.9090 18 6 1.7592 -9.6852 -0.0240 19 6 2.6912 -10.8985 -0.0298 20 6 3.5747 -10.8689 1.2190 21 6 4.4079 -9.5856 1.2239 22 1 5.0377 -9.5647 2.1133 23 9 5.2143 -9.5489 0.0812 24 6 3.4750 -8.3723 1.2302 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3906 0.0005 27 1 0.6165 -4.9246 0.8846 28 1 0.6178 -4.9168 -0.8953 29 1 1.1306 -9.7135 0.8660 30 1 1.1300 -9.7065 -0.9139 31 1 2.0975 -11.8127 -0.0328 32 1 3.3195 -10.8699 -0.9200 33 1 2.9465 -10.8974 2.1094 34 1 4.2384 -11.7335 1.2151 35 1 4.0687 -7.4582 1.2342 36 1 2.8462 -8.4010 2.1202 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118100323.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:00 Heat of formation + Delta-G solvation = -215.628206 kcal Electronic energy + Delta-G solvation = -20941.054229 eV Core-core repulsion = 17337.939279 eV Total energy + Delta-G solvation = -3603.114950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.60183 -41.85741 -40.14645 -38.55946 -37.40004 -36.05582 -33.44605 -32.52588 -31.37177 -30.00900 -26.74850 -25.10409 -23.70010 -22.01064 -21.45513 -20.63097 -20.09590 -18.92732 -18.07303 -17.83256 -17.49675 -16.79045 -16.51989 -16.34846 -16.07023 -15.83935 -15.68291 -15.34831 -14.67308 -14.45554 -14.00113 -13.75507 -13.58309 -13.40543 -13.29823 -12.97486 -12.93142 -12.57124 -12.49434 -12.23271 -12.12738 -11.91507 -11.84002 -11.62714 -11.59388 -11.15100 -11.06038 -10.53451 -10.13920 -8.54152 -6.05110 1.02963 1.33772 1.35179 1.44317 1.56951 1.84631 2.28558 2.97971 3.11205 3.39484 3.47566 3.60658 3.83595 3.87064 3.97876 4.08726 4.11929 4.14431 4.19402 4.27057 4.31596 4.48756 4.64310 4.90157 4.94991 5.06662 5.11266 5.16551 5.25437 5.32051 5.35612 5.45110 5.86946 6.43171 6.59737 7.00873 7.37370 7.90982 8.62911 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.040236 B = 0.003367 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.722034 B = 8315.020097 C = 8839.476539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.340 4.340 8 H 0.084 0.916 9 N -0.557 5.557 10 C 0.435 3.565 11 O -0.618 6.618 12 C 0.070 3.930 13 O -0.344 6.344 14 C 0.462 3.538 15 O -0.528 6.528 16 C -0.075 4.075 17 H 0.112 0.888 18 C -0.100 4.100 19 C -0.116 4.116 20 C -0.144 4.144 21 C 0.092 3.908 22 H 0.110 0.890 23 F -0.228 7.228 24 C -0.141 4.141 25 H 0.281 0.719 26 H 0.400 0.600 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.621 -20.829 3.066 21.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.102 0.898 9 N -0.194 5.194 10 C 0.222 3.778 11 O -0.505 6.505 12 C -0.007 4.007 13 O -0.259 6.259 14 C 0.307 3.693 15 O -0.418 6.418 16 C -0.094 4.094 17 H 0.130 0.870 18 C -0.138 4.138 19 C -0.154 4.154 20 C -0.182 4.182 21 C 0.056 3.944 22 H 0.128 0.872 23 F -0.209 7.209 24 C -0.179 4.179 25 H 0.091 0.909 26 H 0.234 0.766 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.926 -20.682 3.043 21.109 hybrid contribution -0.414 1.260 -0.265 1.352 sum 2.512 -19.422 2.778 19.780 Atomic orbital electron populations 1.69670 1.06966 1.29786 1.49085 1.26134 0.96589 1.02598 0.95562 0.84850 0.77916 0.76286 0.78822 1.19453 1.19321 1.19502 1.19733 0.92961 0.83400 1.50782 0.89788 1.41742 1.09545 1.04183 1.63975 1.20112 0.88086 0.85401 0.84183 1.90528 1.15462 1.87699 1.56774 1.22520 0.90250 0.82707 1.05253 1.86575 1.40820 1.15183 1.83308 1.24479 0.89019 0.84531 0.71306 1.90628 1.17709 1.86814 1.46621 1.21185 0.96169 0.89352 1.02688 0.86976 1.21489 0.97337 0.91131 1.03803 1.21520 0.97679 0.97624 0.98535 1.22206 0.99196 0.96495 1.00263 1.21767 0.90836 0.95816 0.86004 0.87197 1.92785 1.75727 1.97597 1.54755 1.22191 0.98410 0.99872 0.97384 0.90911 0.76564 0.87528 0.87786 0.90507 0.91257 0.88900 0.91713 0.88207 0.89090 0.90842 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.74 13.05 21.66 0.28 -48.45 16 2 C -0.01 -0.42 5.50 84.92 0.47 0.04 16 3 Si 1.00 42.15 29.55 68.60 2.03 44.18 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.34 -19.23 9.68 84.04 0.81 -18.42 16 8 H 0.08 5.04 7.16 -2.91 -0.02 5.02 16 9 N -0.56 -28.89 5.29 -306.98 -1.62 -30.51 16 10 C 0.44 21.62 7.86 87.66 0.69 22.31 16 11 O -0.62 -35.70 16.08 15.73 0.25 -35.45 16 12 C 0.07 2.69 5.94 71.24 0.42 3.11 16 13 O -0.34 -12.98 9.66 -45.04 -0.43 -13.42 16 14 C 0.46 14.39 7.26 71.24 0.52 14.91 16 15 O -0.53 -17.87 15.73 21.96 0.35 -17.53 16 16 C -0.07 -1.72 2.51 -11.54 -0.03 -1.75 16 17 H 0.11 2.63 7.80 -2.39 -0.02 2.61 16 18 C -0.10 -1.79 4.49 30.60 0.14 -1.65 16 19 C -0.12 -1.49 5.80 30.60 0.18 -1.32 16 20 C -0.14 -1.55 5.72 30.60 0.17 -1.38 16 21 C 0.09 1.41 4.13 30.61 0.13 1.54 16 22 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 23 F -0.23 -4.93 16.04 44.97 0.72 -4.21 16 24 C -0.14 -2.80 4.93 30.61 0.15 -2.64 16 25 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 26 H 0.40 19.51 7.90 -92.71 -0.73 18.77 16 27 H 0.11 3.65 8.13 -2.38 -0.02 3.63 16 28 H 0.10 3.62 8.13 -2.39 -0.02 3.60 16 29 H 0.08 1.35 8.10 -2.39 -0.02 1.33 16 30 H 0.07 1.33 8.10 -2.38 -0.02 1.31 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.94 7.80 -2.39 -0.02 0.92 16 33 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 1.79 8.11 -2.39 -0.02 1.77 16 36 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -69.84 310.80 5.59 -64.25 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.37 Total: 26.38 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 3.65 Total: 14.76 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -1.34 Total: -78.96 kcal Atomic # 8 Polarization: -66.56 SS G_CDS: 0.16 Total: -66.39 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.72 Total: -4.21 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -69.84 5.59 -64.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118100323.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.375 kcal (2) G-P(sol) polarization free energy of solvation -69.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds