Wall clock time and date at job start Mon Mar 30 2020 01:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 O 1.42892 * 110.64286 * 303.13896 * 9 7 2 11 11 C 1.55160 * 110.72092 * 66.48010 * 9 7 2 12 12 C 1.54906 * 101.58221 * 153.86567 * 11 9 7 13 13 N 1.47423 * 104.83084 * 322.98626 * 12 11 9 14 14 C 1.34775 * 125.64955 * 204.09190 * 13 12 11 15 15 O 1.21275 * 120.00322 * 180.02562 * 14 13 12 16 16 C 1.50711 * 119.99892 * 0.04617 * 14 13 12 17 17 F 1.39904 * 110.45446 * 312.60402 * 16 14 13 18 18 C 1.54510 * 110.50971 * 189.99634 * 16 14 13 19 19 C 1.54476 * 104.06072 * 241.35291 * 18 16 14 20 20 O 1.44421 * 104.80634 * 23.98159 * 19 18 16 21 21 C 1.44424 * 105.27382 * 319.49003 * 20 19 18 22 22 C 1.47021 * 108.70514 * 24.13138 * 13 12 11 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 0.96705 * 114.00287 * 59.29819 * 10 9 7 25 25 H 1.09002 * 111.00148 * 271.93481 * 11 9 7 26 26 H 1.08994 * 111.00794 * 35.78624 * 11 9 7 27 27 H 1.08998 * 110.36599 * 204.15022 * 12 11 9 28 28 H 1.09002 * 110.46217 * 81.87718 * 12 11 9 29 29 H 1.08998 * 110.50846 * 0.02562 * 18 16 14 30 30 H 1.09007 * 110.50533 * 122.70943 * 18 16 14 31 31 H 1.09000 * 110.37152 * 142.81178 * 19 18 16 32 32 H 1.09004 * 110.37403 * 265.14669 * 19 18 16 33 33 H 1.09003 * 110.36980 * 281.67800 * 21 20 19 34 34 H 1.08998 * 110.37572 * 159.34263 * 21 20 19 35 35 H 1.08994 * 109.88020 * 239.52352 * 22 13 12 36 36 H 1.08998 * 110.00852 * 118.42829 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 8 0.3657 -2.5647 1.1312 11 6 0.4755 -2.6911 -1.3186 12 6 0.3802 -4.2349 -1.4030 13 7 1.6655 -4.7220 -0.8701 14 6 2.2309 -5.9132 -1.1494 15 8 3.2959 -6.2107 -0.6514 16 6 1.5398 -6.8753 -2.0811 17 9 0.1896 -7.0038 -1.7378 18 6 2.2390 -8.2529 -2.0529 19 6 2.7257 -8.4564 -3.5049 20 8 2.8390 -7.1225 -4.0466 21 6 1.6868 -6.4096 -3.5466 22 6 2.2281 -3.6937 0.0173 23 1 -0.4850 0.8401 -0.0041 24 1 -0.2930 -1.8570 1.1538 25 1 -0.5156 -2.2411 -1.2614 26 1 1.0380 -2.2877 -2.1606 27 1 0.2546 -4.5512 -2.4385 28 1 -0.4462 -4.5996 -0.7929 29 1 3.0843 -8.2381 -1.3649 30 1 1.5321 -9.0343 -1.7739 31 1 3.6958 -8.9532 -3.5137 32 1 1.9967 -9.0356 -4.0717 33 1 0.7984 -6.6748 -4.1199 34 1 1.8587 -5.3341 -3.5875 35 1 3.2029 -3.3771 -0.3534 36 1 2.3264 -4.0873 1.0290 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118284941.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:03 Heat of formation + Delta-G solvation = -190.613030 kcal Electronic energy + Delta-G solvation = -22393.188660 eV Core-core repulsion = 18791.158450 eV Total energy + Delta-G solvation = -3602.030211 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.14422 -41.42391 -39.99449 -38.88182 -36.25889 -34.17397 -32.90200 -31.75816 -30.56400 -29.81902 -27.21073 -25.21458 -23.97837 -22.96808 -21.55479 -20.63333 -19.24943 -18.79593 -18.01811 -17.70871 -16.98213 -16.82317 -16.69102 -16.20657 -16.09194 -15.60678 -15.37433 -15.09949 -14.87272 -14.29513 -14.07433 -13.94882 -13.51602 -13.32212 -13.24146 -13.15836 -12.70921 -12.68185 -12.61731 -12.44628 -12.29663 -12.04230 -11.91079 -11.37513 -11.22147 -10.81294 -10.63954 -10.18401 -9.82648 -8.27446 -6.41427 1.15557 1.41431 1.44933 1.53428 1.67022 2.38382 2.69890 2.80111 2.98242 3.04279 3.20251 3.71439 3.78212 3.89175 3.98426 4.12510 4.15774 4.27638 4.36189 4.46496 4.51616 4.57946 4.67470 4.74158 4.81806 4.94422 5.07900 5.11526 5.39748 5.46180 5.55637 5.73686 6.02205 6.32471 6.61212 6.75130 7.29273 7.41649 8.79462 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.033948 B = 0.005007 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.585364 B = 5591.035454 C = 5725.403140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.039 3.961 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.563 4.563 8 H 0.054 0.946 9 C 0.236 3.764 10 O -0.595 6.595 11 C -0.128 4.128 12 C 0.104 3.896 13 N -0.601 5.601 14 C 0.507 3.493 15 O -0.563 6.563 16 C 0.076 3.924 17 F -0.182 7.182 18 C -0.169 4.169 19 C 0.048 3.952 20 O -0.381 6.381 21 C 0.038 3.962 22 C 0.127 3.873 23 H 0.274 0.726 24 H 0.383 0.617 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.506 -12.730 -8.591 15.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.163 4.163 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.601 4.601 8 H 0.072 0.928 9 C 0.196 3.804 10 O -0.405 6.405 11 C -0.167 4.167 12 C -0.018 4.018 13 N -0.332 5.332 14 C 0.294 3.706 15 O -0.443 6.443 16 C 0.055 3.945 17 F -0.162 7.162 18 C -0.207 4.207 19 C -0.028 4.028 20 O -0.300 6.300 21 C -0.040 4.040 22 C 0.004 3.996 23 H 0.083 0.917 24 H 0.235 0.765 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.117 0.883 33 H 0.137 0.863 34 H 0.118 0.882 35 H 0.084 0.916 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.590 -13.280 -8.328 15.686 hybrid contribution -0.142 1.612 0.549 1.709 sum -0.732 -11.668 -7.779 14.043 Atomic orbital electron populations 1.69625 1.06611 1.28600 1.49862 1.25581 0.95851 1.01963 0.92865 0.85518 0.78500 0.78980 0.78380 1.19766 1.20373 1.20235 1.21729 0.93500 0.91643 1.53264 0.92806 1.19576 0.86539 0.90503 0.83772 1.86091 1.49714 1.55580 1.49090 1.23153 1.01926 0.92257 0.99373 1.22606 0.84238 0.95456 0.99458 1.48680 1.23013 1.15689 1.45825 1.20728 0.85703 0.81756 0.82403 1.90649 1.23576 1.76406 1.53681 1.22514 0.77902 0.97569 0.96559 1.92926 1.32865 1.96841 1.93564 1.23590 1.02762 0.93196 1.01155 1.23702 1.04380 0.84407 0.90335 1.89198 1.44216 1.24890 1.71691 1.24060 0.92328 0.99068 0.88504 1.21911 0.97234 0.87817 0.92631 0.91682 0.76504 0.90110 0.91645 0.88617 0.91008 0.88936 0.86011 0.86682 0.88343 0.86254 0.88185 0.91603 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.62 10.72 21.45 0.23 -45.39 16 2 C 0.04 1.96 5.29 84.66 0.45 2.40 16 3 Si 0.96 40.81 29.54 68.60 2.03 42.84 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.56 -29.48 8.21 25.60 0.21 -29.27 16 8 H 0.05 2.86 7.53 -2.91 -0.02 2.84 16 9 C 0.24 11.43 0.85 -10.35 -0.01 11.42 16 10 O -0.59 -30.29 13.08 -148.98 -1.95 -32.24 16 11 C -0.13 -5.37 5.68 31.99 0.18 -5.19 16 12 C 0.10 3.65 5.71 86.85 0.50 4.14 16 13 N -0.60 -23.75 3.33 -811.80 -2.70 -26.45 16 14 C 0.51 18.96 6.82 87.66 0.60 19.56 16 15 O -0.56 -24.37 15.67 -3.01 -0.05 -24.42 16 16 C 0.08 2.10 1.19 -10.52 -0.01 2.08 16 17 F -0.18 -4.89 15.51 44.97 0.70 -4.20 16 18 C -0.17 -3.72 6.51 31.61 0.21 -3.52 16 19 C 0.05 0.84 7.63 72.48 0.55 1.39 16 20 O -0.38 -9.50 11.65 -148.98 -1.74 -11.24 16 21 C 0.04 0.89 6.14 72.48 0.45 1.33 16 22 C 0.13 5.82 6.22 86.73 0.54 6.36 16 23 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 24 H 0.38 19.57 7.04 -74.05 -0.52 19.05 16 25 H 0.08 3.49 7.77 -2.39 -0.02 3.47 16 26 H 0.06 2.75 8.04 -2.39 -0.02 2.73 16 27 H 0.10 2.68 6.15 -2.39 -0.01 2.66 16 28 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.09 2.46 6.56 -2.39 -0.02 2.45 16 30 H 0.12 2.04 8.06 -2.38 -0.02 2.02 16 31 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.12 2.00 8.13 -2.39 -0.02 1.98 16 34 H 0.10 2.52 7.16 -2.39 -0.02 2.50 16 35 H 0.07 3.10 7.63 -2.39 -0.02 3.08 16 36 H 0.05 2.27 8.07 -2.39 -0.02 2.25 16 Total: -1.00 -61.12 295.92 0.77 -60.35 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.59 Total: 30.01 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 3.66 Total: 10.72 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -2.47 Total: -71.83 kcal Atomic # 8 Polarization: -64.17 SS G_CDS: -3.73 Total: -67.90 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.70 Total: -4.20 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -61.12 0.77 -60.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118284941.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.260 kcal (2) G-P(sol) polarization free energy of solvation -61.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds