Wall clock time and date at job start Mon Mar 30 2020 01:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00090 * 2 1 4 4 H 1.48499 * 109.46999 * 269.99718 * 3 2 1 5 5 H 1.48496 * 109.46850 * 29.99560 * 3 2 1 6 6 H 1.48497 * 109.47426 * 149.99694 * 3 2 1 7 7 C 1.37876 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00624 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99784 * 0.02562 * 7 2 1 10 10 O 1.42894 * 110.88642 * 62.42579 * 9 7 2 11 11 C 1.55156 * 111.00284 * 298.54102 * 9 7 2 12 12 C 1.54320 * 102.94328 * 206.42213 * 11 9 7 13 13 N 1.47026 * 107.26845 * 22.19927 * 12 11 9 14 14 C 1.34779 * 125.64592 * 181.02100 * 13 12 11 15 15 O 1.21279 * 119.99827 * 180.02562 * 14 13 12 16 16 C 1.50701 * 120.00063 * 0.02562 * 14 13 12 17 17 F 1.39905 * 110.45752 * 310.70007 * 16 14 13 18 18 C 1.54508 * 110.51034 * 188.09809 * 16 14 13 19 19 C 1.54487 * 104.06159 * 241.21664 * 18 16 14 20 20 O 1.44426 * 104.80045 * 23.97848 * 19 18 16 21 21 C 1.44422 * 105.27817 * 319.48836 * 20 19 18 22 22 C 1.47422 * 108.70491 * 1.28492 * 13 12 11 23 23 H 0.96998 * 120.00215 * 0.02562 * 1 2 3 24 24 H 0.96696 * 114.00403 * 297.57594 * 10 9 7 25 25 H 1.09003 * 110.71560 * 88.06412 * 11 9 7 26 26 H 1.08998 * 110.87696 * 324.86385 * 11 9 7 27 27 H 1.09005 * 109.88414 * 262.78259 * 12 11 9 28 28 H 1.08999 * 109.88116 * 141.61078 * 12 11 9 29 29 H 1.08996 * 110.51460 * 359.85930 * 18 16 14 30 30 H 1.08999 * 110.51389 * 122.57246 * 18 16 14 31 31 H 1.09000 * 110.37190 * 142.81038 * 19 18 16 32 32 H 1.09000 * 110.37009 * 265.15084 * 19 18 16 33 33 H 1.09003 * 110.37061 * 281.68202 * 21 20 19 34 34 H 1.08995 * 110.37431 * 159.34705 * 21 20 19 35 35 H 1.08996 * 110.36851 * 94.47915 * 22 13 12 36 36 H 1.08996 * 110.36475 * 216.80596 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.4615 -2.6316 -1.1831 11 6 0.3731 -2.6345 1.2727 12 6 0.2578 -4.1629 1.4521 13 7 1.3940 -4.7722 0.7455 14 6 1.6415 -6.0936 0.6487 15 8 2.6136 -6.4853 0.0384 16 6 0.7103 -7.0842 1.2987 17 9 0.4614 -6.7225 2.6271 18 6 1.3014 -8.5100 1.2276 19 6 0.2651 -9.3053 0.4028 20 8 -0.4256 -8.3084 -0.3815 21 6 -0.6131 -7.1866 0.5085 22 6 2.2211 -3.6984 0.1658 23 1 -0.4850 0.8400 -0.0004 24 1 -0.2244 -1.9564 -1.2761 25 1 -0.6091 -2.1898 1.1124 26 1 0.8643 -2.1810 2.1336 27 1 -0.6792 -4.5170 1.0222 28 1 0.3012 -4.4160 2.5114 29 1 2.2659 -8.4988 0.7201 30 1 1.3997 -8.9331 2.2273 31 1 0.7669 -10.0203 -0.2491 32 1 -0.4331 -9.8184 1.0641 33 1 -1.4460 -7.3749 1.1860 34 1 -0.7860 -6.2742 -0.0621 35 1 3.0357 -3.4399 0.8423 36 1 2.6144 -4.0040 -0.8037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118284942.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:05 Heat of formation + Delta-G solvation = -169.338502 kcal Electronic energy + Delta-G solvation = -22437.081908 eV Core-core repulsion = 18835.974230 eV Total energy + Delta-G solvation = -3601.107678 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.121 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.98457 -39.99630 -38.68166 -37.24401 -34.41550 -32.27269 -31.77302 -30.24712 -29.19080 -28.22684 -25.42451 -23.90300 -22.72162 -21.53270 -19.88184 -19.22021 -17.52813 -17.06854 -16.92557 -16.46322 -15.59881 -15.23112 -14.99184 -14.87725 -14.60303 -14.37837 -14.05920 -13.50018 -13.33519 -13.14040 -12.58996 -12.21636 -12.05697 -11.86456 -11.70267 -11.61396 -11.38372 -11.29961 -10.94999 -10.86220 -10.67046 -10.50392 -10.12127 -10.08119 -9.52418 -9.40337 -8.72825 -8.28698 -8.15328 -6.32906 -4.41144 2.64251 3.15501 3.18171 3.25713 3.29750 3.70055 3.98177 4.16209 4.23354 4.48808 4.68978 4.88772 4.94678 5.04867 5.32059 5.43198 5.47629 5.51872 5.59108 5.67172 5.77984 5.90448 5.96839 6.20020 6.33814 6.48604 6.53594 6.80039 6.85760 7.23307 7.28119 7.68653 7.88405 7.96770 8.30506 8.61512 9.25346 9.34215 10.74654 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.039954 B = 0.004903 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.642632 B = 5709.676704 C = 5777.945799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.582 6.582 11 C -0.136 4.136 12 C 0.091 3.909 13 N -0.594 5.594 14 C 0.517 3.483 15 O -0.533 6.533 16 C 0.075 3.925 17 F -0.184 7.184 18 C -0.171 4.171 19 C 0.047 3.953 20 O -0.358 6.358 21 C 0.035 3.965 22 C 0.119 3.881 23 H 0.268 0.732 24 H 0.381 0.619 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.773 -12.109 4.849 13.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.174 4.174 12 C -0.031 4.031 13 N -0.325 5.325 14 C 0.302 3.698 15 O -0.411 6.411 16 C 0.053 3.947 17 F -0.165 7.165 18 C -0.209 4.209 19 C -0.030 4.030 20 O -0.277 6.277 21 C -0.043 4.043 22 C -0.003 4.003 23 H 0.078 0.922 24 H 0.231 0.769 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.130 0.870 35 H 0.094 0.906 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.081 -12.777 4.244 13.624 hybrid contribution -0.009 1.531 0.627 1.654 sum -2.090 -11.247 4.871 12.433 Atomic orbital electron populations 1.69707 1.05979 1.27716 1.49992 1.24978 0.95020 0.99536 0.93359 0.86406 0.79812 0.82333 0.78387 1.20370 1.21036 1.19693 1.21425 0.93746 0.90074 1.52205 0.91669 1.19641 0.87000 0.90582 0.81983 1.86134 1.51560 1.56957 1.44411 1.23198 1.03353 0.89637 1.01234 1.22404 0.88052 0.97018 0.95675 1.48591 1.27467 1.04548 1.51914 1.19806 0.85948 0.82210 0.81855 1.90666 1.28984 1.78016 1.43427 1.22501 0.97468 0.95946 0.78832 1.92895 1.95232 1.93128 1.35230 1.23538 1.02557 0.91442 1.03386 1.23455 0.93186 0.91854 0.94493 1.89225 1.78122 1.25853 1.34452 1.24002 0.94134 0.92340 0.93839 1.22530 0.93839 0.85817 0.98070 0.92169 0.76869 0.89318 0.91152 0.92353 0.91760 0.86844 0.88583 0.88111 0.91644 0.89691 0.86990 0.90609 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.51 10.76 55.43 0.60 -21.91 16 2 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 3 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.54 -13.70 8.27 -34.44 -0.28 -13.98 16 8 H 0.07 1.66 7.79 -52.48 -0.41 1.26 16 9 C 0.25 5.87 0.87 -89.50 -0.08 5.79 16 10 O -0.58 -14.45 13.17 -35.23 -0.46 -14.91 16 11 C -0.14 -2.85 5.37 -24.90 -0.13 -2.99 16 12 C 0.09 1.65 5.85 -3.06 -0.02 1.63 16 13 N -0.59 -11.82 3.32 -170.38 -0.57 -12.38 16 14 C 0.52 9.90 6.83 -10.98 -0.08 9.83 16 15 O -0.53 -11.51 15.57 5.56 0.09 -11.42 16 16 C 0.07 1.12 1.24 -90.20 -0.11 1.01 16 17 F -0.18 -2.73 15.10 2.25 0.03 -2.69 16 18 C -0.17 -2.13 6.51 -25.16 -0.16 -2.29 16 19 C 0.05 0.51 7.63 37.94 0.29 0.80 16 20 O -0.36 -5.18 11.65 -35.23 -0.41 -5.59 16 21 C 0.03 0.48 6.49 37.93 0.25 0.73 16 22 C 0.12 2.62 6.10 -2.41 -0.01 2.61 16 23 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 24 H 0.38 9.41 7.57 45.56 0.34 9.75 16 25 H 0.09 1.94 7.55 -51.93 -0.39 1.55 16 26 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16 27 H 0.06 0.98 6.73 -51.93 -0.35 0.63 16 28 H 0.06 1.06 7.11 -51.93 -0.37 0.69 16 29 H 0.11 1.59 6.54 -51.93 -0.34 1.25 16 30 H 0.10 0.97 8.06 -51.93 -0.42 0.55 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.95 8.12 -51.93 -0.42 0.53 16 34 H 0.11 1.68 6.72 -51.93 -0.35 1.33 16 35 H 0.08 1.62 8.03 -51.93 -0.42 1.20 16 36 H 0.07 1.72 8.03 -51.93 -0.42 1.30 16 LS Contribution 295.79 15.07 4.46 4.46 Total: -1.00 -28.28 295.79 -5.66 -33.94 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -3.94 Total: 10.78 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.44 Total: 4.89 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.03 Total: -34.30 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.79 Total: -31.93 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.03 Total: -2.69 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.28 -5.66 -33.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118284942.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.396 kcal (2) G-P(sol) polarization free energy of solvation -28.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds